Wall clock time and date at job start Mon Mar 30 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35126 * 117.00271 * 2 1 4 4 S 1.69970 * 124.07502 * 0.51688 * 3 2 1 5 5 C 1.75793 * 93.28165 * 179.97438 * 4 3 2 6 6 C 1.39160 * 129.98359 * 179.45685 * 5 4 3 7 7 C 1.39570 * 120.13364 * 180.02562 * 6 5 4 8 8 C 1.46750 * 120.09998 * 179.97438 * 7 6 5 9 9 O 1.21319 * 120.00490 * 180.02562 * 8 7 6 10 10 C 1.40401 * 119.80150 * 359.97438 * 7 6 5 11 11 C 1.35873 * 120.18779 * 0.02562 * 10 7 6 12 12 C 1.39741 * 110.32810 * 359.70118 * 5 4 3 13 13 C 1.37691 * 124.08566 * 180.02562 * 3 2 1 14 14 C 1.40663 * 123.35519 * 0.02562 * 13 3 2 15 15 H 1.07999 * 120.00002 * 146.14613 * 14 13 3 16 16 C 1.39644 * 120.00094 * 326.14107 * 14 13 3 17 17 N 1.31187 * 119.99830 * 339.30230 * 16 14 13 18 18 Si 1.86794 * 120.00051 * 159.30464 * 16 14 13 19 19 H 1.48500 * 109.47414 * 89.99950 * 18 16 14 20 20 H 1.48505 * 109.47157 * 210.00377 * 18 16 14 21 21 H 1.48501 * 109.47367 * 329.99875 * 18 16 14 22 22 H 1.09002 * 109.46744 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47054 * 299.99584 * 1 2 3 24 24 H 1.08993 * 109.47386 * 60.00110 * 1 2 3 25 25 H 1.08006 * 119.93107 * 359.97438 * 6 5 4 26 26 H 1.08008 * 119.99978 * 0.02562 * 8 7 6 27 27 H 1.08006 * 119.90773 * 180.02562 * 10 7 6 28 28 H 1.08002 * 119.65725 * 179.97438 * 11 10 7 29 29 H 0.97001 * 120.00086 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0424 1.2040 0.0000 4 16 1.2205 2.6916 0.0127 5 6 2.7079 3.6285 0.0054 6 6 2.8963 5.0073 -0.0002 7 6 4.1871 5.5381 -0.0061 8 6 4.3848 6.9922 -0.0126 9 8 5.5076 7.4518 -0.0181 10 6 5.2958 4.6768 -0.0058 11 6 5.1148 3.3302 -0.0003 12 6 3.8171 2.7784 0.0001 13 6 3.4088 1.3737 -0.0005 14 6 4.3212 0.3031 -0.0016 15 1 5.2624 0.3963 -0.5230 16 6 4.0101 -0.8801 0.6715 17 7 3.1016 -0.8769 1.6180 18 14 4.8874 -2.4674 0.2245 19 1 6.1101 -2.6083 1.0554 20 1 3.9841 -3.6195 0.4736 21 1 5.2656 -2.4366 -1.2113 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 2.0418 5.6679 -0.0009 26 1 3.5308 7.6534 -0.0124 27 1 6.2955 5.0857 -0.0099 28 1 5.9738 2.6755 -0.0005 29 1 2.8857 -1.6987 2.0858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340736.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:30 Heat of formation + Delta-G solvation = -27.154865 kcal Electronic energy + Delta-G solvation = -16734.745497 eV Core-core repulsion = 13907.999844 eV Total energy + Delta-G solvation = -2826.745653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31219 -38.01291 -37.27386 -34.29196 -32.30209 -30.61474 -28.72796 -26.56474 -25.55609 -23.83019 -21.88402 -21.07120 -19.72618 -17.52830 -16.95495 -16.36136 -15.45370 -15.22017 -14.85969 -14.53098 -14.24040 -13.95929 -13.66480 -13.32026 -13.00238 -12.57563 -12.45289 -11.83466 -11.58748 -11.23184 -10.96213 -10.92327 -10.71105 -10.33863 -10.10430 -9.55755 -9.50265 -9.44936 -9.08141 -8.54906 -7.29417 -6.76230 -6.49786 -4.17005 0.99540 1.90745 2.41564 2.64330 3.00168 3.09795 3.16785 3.22299 3.69730 4.08666 4.44200 4.56438 4.59854 5.20374 5.24789 5.55054 5.64630 5.80348 5.86418 5.98400 6.01787 6.09109 6.27487 6.48665 6.75151 6.91704 7.06003 7.25030 7.46307 7.63479 7.71056 8.35931 8.40121 8.92617 8.95539 10.39910 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.007125 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.541417 B = 3928.789649 C = 4981.117153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.235 6.235 3 C -0.115 4.115 4 S 0.030 5.970 5 C -0.173 4.173 6 C -0.021 4.021 7 C -0.219 4.219 8 C 0.390 3.610 9 O -0.479 6.479 10 C -0.078 4.078 11 C -0.095 4.095 12 C 0.003 3.997 13 C 0.039 3.961 14 C -0.441 4.441 15 H 0.075 0.925 16 C 0.081 3.919 17 N -0.771 5.771 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.264 1.264 22 H 0.084 0.916 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.122 0.878 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 5.367 -1.950 6.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.148 6.148 3 C -0.276 4.276 4 S 0.291 5.709 5 C -0.288 4.288 6 C -0.044 4.044 7 C -0.223 4.223 8 C 0.251 3.749 9 O -0.355 6.355 10 C -0.100 4.100 11 C -0.114 4.114 12 C -0.008 4.008 13 C 0.030 3.970 14 C -0.474 4.474 15 H 0.093 0.907 16 C -0.137 4.137 17 N -0.397 5.397 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.188 1.188 22 H 0.102 0.898 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.140 0.860 26 H 0.111 0.889 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.921 5.532 -1.768 7.612 hybrid contribution 1.260 -1.343 0.056 1.843 sum -3.661 4.189 -1.712 5.820 Atomic orbital electron populations 1.22837 0.82689 1.02098 0.99615 1.85968 1.16266 1.22911 1.89611 1.22042 0.94000 0.86253 1.25267 1.81987 1.07790 0.98396 1.82727 1.22154 0.97129 0.96590 1.12952 1.20568 0.95823 0.92234 0.95749 1.20393 0.93684 0.95684 1.12493 1.23789 0.91858 0.89500 0.69789 1.90487 1.28964 1.79386 1.36662 1.20678 0.98067 0.92769 0.98451 1.20553 0.95949 0.94325 1.00594 1.19640 0.92322 0.93359 0.95489 1.16802 0.89767 0.89521 1.00898 1.18538 1.02929 0.96657 1.29244 0.90655 1.25558 0.94853 0.99997 0.93341 1.69885 1.26007 1.28816 1.15040 0.86433 0.79437 0.81449 0.80053 1.20015 1.20441 1.18786 0.89789 0.94217 0.94535 0.85974 0.88948 0.85784 0.85616 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.19 101.05 1.03 1.51 15 2 O -0.24 -5.71 7.72 -17.08 -0.13 -5.84 15 3 C -0.12 -2.83 6.48 30.53 0.20 -2.63 15 4 S 0.03 0.61 21.41 -107.50 -2.30 -1.69 15 5 C -0.17 -3.54 6.41 -38.68 -0.25 -3.79 15 6 C -0.02 -0.34 9.81 -38.74 -0.38 -0.72 15 7 C -0.22 -3.60 5.86 -105.15 -0.62 -4.22 15 8 C 0.39 5.44 11.43 34.17 0.39 5.83 15 9 O -0.48 -8.21 17.15 5.52 0.09 -8.12 15 10 C -0.08 -1.40 9.52 -39.62 -0.38 -1.77 15 11 C -0.09 -1.91 9.78 -39.38 -0.39 -2.29 15 12 C 0.00 0.06 6.03 -105.05 -0.63 -0.57 15 13 C 0.04 1.01 5.51 -105.95 -0.58 0.42 15 14 C -0.44 -11.61 8.94 -38.14 -0.34 -11.95 15 15 H 0.08 1.90 7.92 -52.49 -0.42 1.48 15 16 C 0.08 2.07 4.70 -17.30 -0.08 1.99 15 17 N -0.77 -20.33 11.07 55.54 0.61 -19.71 15 18 Si 0.90 19.34 29.61 -169.99 -5.03 14.31 15 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 20 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 21 H -0.26 -5.65 7.11 56.52 0.40 -5.25 15 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 23 H 0.04 0.71 7.96 -51.93 -0.41 0.30 15 24 H 0.04 0.62 7.98 -51.93 -0.41 0.20 15 25 H 0.12 1.58 8.06 -52.48 -0.42 1.16 15 26 H 0.09 0.89 8.06 -52.48 -0.42 0.47 15 27 H 0.12 2.05 7.64 -52.48 -0.40 1.65 15 28 H 0.13 2.42 8.05 -52.49 -0.42 2.00 15 29 H 0.27 6.72 8.30 -40.82 -0.34 6.38 15 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -29.58 275.06 -7.11 -36.69 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -2.47 Total: -1.57 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.03 Total: -18.20 kcal Atomic # 7 Polarization: -20.33 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.04 Total: -13.96 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.30 Total: -1.69 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.58 -7.11 -36.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340736.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.534 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds