Wall clock time and date at job start Mon Mar 30 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35126 * 117.00271 * 2 1 4 4 S 1.69970 * 124.07502 * 0.51688 * 3 2 1 5 5 C 1.75793 * 93.28165 * 179.97438 * 4 3 2 6 6 C 1.39160 * 129.98359 * 179.45685 * 5 4 3 7 7 C 1.39570 * 120.13364 * 180.02562 * 6 5 4 8 8 C 1.46750 * 120.09998 * 179.97438 * 7 6 5 9 9 O 1.21319 * 120.00490 * 180.02562 * 8 7 6 10 10 C 1.40401 * 119.80150 * 359.97438 * 7 6 5 11 11 C 1.35873 * 120.18779 * 0.02562 * 10 7 6 12 12 C 1.39741 * 110.32810 * 359.70118 * 5 4 3 13 13 C 1.37691 * 124.08566 * 180.02562 * 3 2 1 14 14 C 1.40663 * 123.35519 * 0.02562 * 13 3 2 15 15 H 1.07999 * 120.00002 * 146.14613 * 14 13 3 16 16 C 1.39644 * 120.00094 * 326.14107 * 14 13 3 17 17 N 1.31187 * 119.99830 * 339.30230 * 16 14 13 18 18 Si 1.86794 * 120.00051 * 159.30464 * 16 14 13 19 19 H 1.48500 * 109.47414 * 89.99950 * 18 16 14 20 20 H 1.48505 * 109.47157 * 210.00377 * 18 16 14 21 21 H 1.48501 * 109.47367 * 329.99875 * 18 16 14 22 22 H 1.09002 * 109.46744 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47054 * 299.99584 * 1 2 3 24 24 H 1.08993 * 109.47386 * 60.00110 * 1 2 3 25 25 H 1.08006 * 119.93107 * 359.97438 * 6 5 4 26 26 H 1.08008 * 119.99978 * 0.02562 * 8 7 6 27 27 H 1.08006 * 119.90773 * 180.02562 * 10 7 6 28 28 H 1.08002 * 119.65725 * 179.97438 * 11 10 7 29 29 H 0.97001 * 120.00086 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0424 1.2040 0.0000 4 16 1.2205 2.6916 0.0127 5 6 2.7079 3.6285 0.0054 6 6 2.8963 5.0073 -0.0002 7 6 4.1871 5.5381 -0.0061 8 6 4.3848 6.9922 -0.0126 9 8 5.5076 7.4518 -0.0181 10 6 5.2958 4.6768 -0.0058 11 6 5.1148 3.3302 -0.0003 12 6 3.8171 2.7784 0.0001 13 6 3.4088 1.3737 -0.0005 14 6 4.3212 0.3031 -0.0016 15 1 5.2624 0.3963 -0.5230 16 6 4.0101 -0.8801 0.6715 17 7 3.1016 -0.8769 1.6180 18 14 4.8874 -2.4674 0.2245 19 1 6.1101 -2.6083 1.0554 20 1 3.9841 -3.6195 0.4736 21 1 5.2656 -2.4366 -1.2113 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 2.0418 5.6679 -0.0009 26 1 3.5308 7.6534 -0.0124 27 1 6.2955 5.0857 -0.0099 28 1 5.9738 2.6755 -0.0005 29 1 2.8857 -1.6987 2.0858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340736.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:30 Heat of formation + Delta-G solvation = -44.503423 kcal Electronic energy + Delta-G solvation = -16735.497787 eV Core-core repulsion = 13907.999844 eV Total energy + Delta-G solvation = -2827.497943 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.68989 -39.51502 -38.85380 -35.99165 -34.02747 -32.07577 -30.31704 -28.20085 -27.21726 -25.26111 -23.39119 -22.56559 -21.32810 -19.11327 -18.71000 -17.75736 -16.97956 -16.69224 -16.47737 -16.18349 -15.80353 -15.22188 -15.16865 -14.78866 -14.54965 -14.11965 -14.03876 -13.45128 -13.25256 -12.87690 -12.63813 -12.52790 -12.33183 -12.03111 -11.69687 -11.16755 -11.12372 -10.83436 -10.69342 -10.14190 -8.85911 -8.58885 -8.26962 -6.06402 -0.40200 0.43111 0.84731 1.19058 1.32472 1.39997 1.43468 1.51619 2.06794 2.31245 2.88374 2.99215 3.34962 3.49021 3.93868 4.18754 4.37620 4.38260 4.41873 4.50438 4.66205 4.67104 4.78529 5.08962 5.28656 5.29707 5.38089 5.59214 5.82241 5.97994 6.45505 6.59488 6.64978 7.05833 7.16608 8.55648 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.007125 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.541417 B = 3928.789649 C = 4981.117153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.269 6.269 3 C -0.134 4.134 4 S 0.080 5.920 5 C -0.190 4.190 6 C -0.007 4.007 7 C -0.213 4.213 8 C 0.404 3.596 9 O -0.510 6.510 10 C -0.077 4.077 11 C -0.112 4.112 12 C -0.036 4.036 13 C -0.002 4.002 14 C -0.479 4.479 15 H 0.065 0.935 16 C 0.043 3.957 17 N -0.806 5.806 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.267 1.267 22 H 0.105 0.895 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.173 0.827 26 H 0.161 0.839 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 7.714 -2.217 9.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.182 6.182 3 C -0.294 4.294 4 S 0.341 5.659 5 C -0.305 4.305 6 C -0.029 4.029 7 C -0.217 4.217 8 C 0.267 3.733 9 O -0.386 6.386 10 C -0.098 4.098 11 C -0.132 4.132 12 C -0.046 4.046 13 C -0.011 4.011 14 C -0.512 4.512 15 H 0.083 0.917 16 C -0.172 4.172 17 N -0.434 5.434 18 Si 0.787 3.213 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.191 1.191 22 H 0.124 0.876 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.190 0.810 26 H 0.176 0.824 27 H 0.153 0.847 28 H 0.135 0.865 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.098 7.888 -2.037 10.176 hybrid contribution 1.600 -1.849 0.100 2.447 sum -4.498 6.038 -1.937 7.775 Atomic orbital electron populations 1.23096 0.80222 1.03940 1.00471 1.85907 1.19007 1.23598 1.89682 1.22465 0.94816 0.88140 1.23976 1.81500 1.06571 0.95396 1.82462 1.22527 0.96475 0.98152 1.13298 1.21033 0.97544 0.91006 0.93366 1.20928 0.93001 0.97600 1.10139 1.24452 0.92925 0.88224 0.67726 1.90508 1.30917 1.79351 1.37827 1.20916 0.99621 0.92009 0.97254 1.20582 0.95113 0.95467 1.02036 1.19735 0.94111 0.92774 0.97986 1.17298 0.90746 0.91052 1.02042 1.18732 1.03375 0.98339 1.30716 0.91661 1.26234 0.95558 1.02472 0.92902 1.69943 1.27859 1.29433 1.16133 0.85483 0.78569 0.77840 0.79432 1.19229 1.19785 1.19089 0.87633 0.93851 0.92900 0.80971 0.82353 0.84663 0.86529 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 10.19 113.37 1.16 1.88 15 2 O -0.27 -13.33 7.72 -84.03 -0.65 -13.98 15 3 C -0.13 -6.71 6.48 67.69 0.44 -6.27 15 4 S 0.08 3.15 21.41 -56.49 -1.21 1.94 15 5 C -0.19 -7.48 6.41 22.86 0.15 -7.34 15 6 C -0.01 -0.20 9.81 22.81 0.22 0.02 15 7 C -0.21 -6.23 5.86 -20.20 -0.12 -6.35 15 8 C 0.40 9.15 11.43 70.05 0.80 9.95 15 9 O -0.51 -15.51 17.15 -3.15 -0.05 -15.56 15 10 C -0.08 -2.66 9.52 22.25 0.21 -2.45 15 11 C -0.11 -4.66 9.78 22.40 0.22 -4.44 15 12 C -0.04 -1.67 6.03 -20.14 -0.12 -1.79 15 13 C 0.00 -0.11 5.51 -20.72 -0.11 -0.23 15 14 C -0.48 -26.66 8.94 23.20 0.21 -26.45 15 15 H 0.07 3.56 7.92 -2.91 -0.02 3.53 15 16 C 0.04 2.30 4.70 85.13 0.40 2.70 15 17 N -0.81 -44.12 11.07 21.79 0.24 -43.88 15 18 Si 0.96 41.25 29.61 68.60 2.03 43.28 15 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 22 H 0.11 3.31 8.14 -2.39 -0.02 3.29 15 23 H 0.04 1.53 7.96 -2.39 -0.02 1.51 15 24 H 0.05 1.73 7.98 -2.39 -0.02 1.71 15 25 H 0.17 3.30 8.06 -2.91 -0.02 3.28 15 26 H 0.16 1.77 8.06 -2.91 -0.02 1.75 15 27 H 0.14 4.32 7.64 -2.91 -0.02 4.30 15 28 H 0.12 4.84 8.05 -2.91 -0.02 4.82 15 29 H 0.28 14.02 8.30 -92.71 -0.77 13.25 15 Total: -1.00 -67.96 275.06 4.99 -62.98 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.18 Total: 5.99 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 3.45 Total: -40.76 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.24 Total: -43.88 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.70 Total: -29.54 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.21 Total: 1.94 kcal Total: -67.96 4.99 -62.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340736.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.473 kcal (2) G-P(sol) polarization free energy of solvation -67.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds