Wall clock time and date at job start Mon Mar 30 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35707 * 117.00140 * 2 1 4 4 C 1.32310 * 124.28020 * 179.97438 * 3 2 1 5 5 C 1.45635 * 114.78900 * 179.97438 * 4 3 2 6 6 C 1.40411 * 128.98367 * 179.97438 * 5 4 3 7 7 C 1.40063 * 120.54738 * 180.02562 * 6 5 4 8 8 C 1.41379 * 119.94765 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99448 * 334.58096 * 8 7 6 10 10 C 1.39832 * 120.00292 * 154.57604 * 8 7 6 11 11 N 1.30908 * 119.99925 * 342.46451 * 10 8 7 12 12 Si 1.86792 * 120.00260 * 162.45853 * 10 8 7 13 13 H 1.48506 * 109.47011 * 94.84467 * 12 10 8 14 14 H 1.48497 * 109.47723 * 214.84442 * 12 10 8 15 15 H 1.48494 * 109.47264 * 334.84761 * 12 10 8 16 16 C 1.40681 * 120.11028 * 359.97438 * 7 6 5 17 17 C 1.38705 * 119.75067 * 0.02562 * 16 7 6 18 18 C 1.46850 * 119.85926 * 179.72450 * 17 16 7 19 19 O 1.21302 * 119.99454 * 0.02562 * 18 17 16 20 20 C 1.40113 * 111.76929 * 0.02562 * 5 4 3 21 21 S 1.75255 * 124.27667 * 359.97438 * 3 2 1 22 22 H 1.08999 * 109.47730 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47728 * 300.00640 * 1 2 3 24 24 H 1.09005 * 109.46914 * 60.00153 * 1 2 3 25 25 H 1.08005 * 122.60265 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.72691 * 0.02562 * 6 5 4 27 27 H 0.96999 * 120.00436 * 180.02562 * 11 10 8 28 28 H 1.07999 * 120.12205 * 180.02562 * 16 7 6 29 29 H 1.07994 * 120.00437 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.3576 1.3768 0.0005 5 6 3.7957 2.7657 -0.0002 6 6 5.1024 3.2797 0.0005 7 6 5.3233 4.6628 0.0002 8 6 6.6443 5.1665 0.0004 9 1 7.4497 4.5696 0.4023 10 6 6.9081 6.4374 -0.5198 11 7 6.0353 7.0177 -1.3041 12 14 8.5057 7.3072 -0.0954 13 1 9.5082 7.0483 -1.1601 14 1 8.2614 8.7681 0.0097 15 1 9.0180 6.7965 1.2014 16 6 4.2328 5.5516 -0.0015 17 6 2.9385 5.0531 -0.0022 18 6 1.7985 5.9787 0.0022 19 8 1.9899 7.1765 0.0060 20 6 2.7112 3.6527 -0.0007 21 16 1.2029 2.7461 -0.0006 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 4.0501 0.5480 0.0005 26 1 5.9441 2.6029 0.0014 27 1 6.2183 7.8991 -1.6653 28 1 4.4029 6.6181 -0.0021 29 1 0.7897 5.5931 0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340738.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:32 Heat of formation + Delta-G solvation = -35.996659 kcal Electronic energy + Delta-G solvation = -16470.400771 eV Core-core repulsion = 13643.271709 eV Total energy + Delta-G solvation = -2827.129062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.93124 -38.59389 -37.30902 -34.74201 -32.72539 -30.48698 -28.57337 -26.62116 -25.62039 -23.88985 -22.38102 -20.52645 -19.55363 -18.00184 -17.26819 -15.91736 -15.73250 -15.66532 -15.36480 -14.85106 -14.37766 -13.64393 -13.56609 -13.28720 -13.03859 -12.49020 -12.37791 -12.15666 -11.72986 -11.34091 -11.23907 -11.05592 -10.82926 -10.35574 -10.25874 -10.05534 -9.73060 -9.14544 -8.96051 -8.57275 -7.36948 -7.11015 -6.89772 -4.57183 1.59046 1.84702 1.88027 2.56638 2.78269 2.99266 3.03833 3.16038 3.46321 3.54423 3.79015 4.37282 4.96813 5.11060 5.15890 5.33486 5.42783 5.76588 5.89855 6.16450 6.34006 6.43681 6.63798 6.74168 6.96880 7.09535 7.20105 7.31984 7.39105 7.66141 7.88510 8.13312 8.24631 8.55407 8.60627 9.94837 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.005907 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.107639 B = 4738.807267 C = 5582.398882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.291 6.291 3 C 0.024 3.976 4 C -0.164 4.164 5 C -0.020 4.020 6 C -0.189 4.189 7 C 0.099 3.901 8 C -0.449 4.449 9 H 0.087 0.913 10 C 0.071 3.929 11 N -0.783 5.783 12 Si 0.915 3.085 13 H -0.268 1.268 14 H -0.273 1.273 15 H -0.258 1.258 16 C -0.046 4.046 17 C -0.151 4.151 18 C 0.383 3.617 19 O -0.472 6.472 20 C -0.201 4.201 21 S -0.003 6.003 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.138 0.862 26 H 0.105 0.895 27 H 0.288 0.712 28 H 0.142 0.858 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -6.829 1.636 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.206 6.206 3 C -0.134 4.134 4 C -0.195 4.195 5 C -0.025 4.025 6 C -0.212 4.212 7 C 0.095 3.905 8 C -0.477 4.477 9 H 0.105 0.895 10 C -0.148 4.148 11 N -0.407 5.407 12 Si 0.738 3.262 13 H -0.193 1.193 14 H -0.198 1.198 15 H -0.182 1.182 16 C -0.067 4.067 17 C -0.157 4.157 18 C 0.243 3.757 19 O -0.347 6.347 20 C -0.316 4.316 21 S 0.253 5.747 22 H 0.119 0.881 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.156 0.844 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.160 0.840 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.828 -5.827 1.484 9.871 hybrid contribution 1.809 -0.114 -0.005 1.812 sum -6.019 -5.941 1.480 8.586 Atomic orbital electron populations 1.23121 0.78490 1.03848 1.01845 1.85920 1.20778 1.23662 1.90244 1.22463 0.95037 0.87603 1.08324 1.20395 0.92457 0.96790 1.09881 1.18471 0.93784 0.89100 1.01189 1.20824 0.92669 0.94838 1.12823 1.17414 0.93513 0.90381 0.89145 1.19623 0.93945 0.99919 1.34242 0.89526 1.26018 0.99162 0.97115 0.92544 1.69784 1.35220 1.15082 1.20650 0.86175 0.80917 0.78806 0.80266 1.19311 1.19755 1.18161 1.21919 0.89431 1.01150 0.94168 1.19785 0.95701 0.90394 1.09784 1.23814 0.93272 0.88322 0.70283 1.90470 1.89319 1.18767 1.36124 1.21710 0.92810 0.95634 1.21402 1.83409 1.10137 0.96658 1.84540 0.88091 0.92517 0.92500 0.84449 0.87696 0.90071 0.84027 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.23 101.05 1.03 1.29 15 2 O -0.29 -4.55 10.55 -18.83 -0.20 -4.75 15 3 C 0.02 0.42 7.10 28.81 0.20 0.63 15 4 C -0.16 -3.19 10.40 -38.56 -0.40 -3.59 15 5 C -0.02 -0.43 6.02 -105.43 -0.63 -1.07 15 6 C -0.19 -4.41 9.80 -38.08 -0.37 -4.79 15 7 C 0.10 2.49 5.55 -107.10 -0.59 1.90 15 8 C -0.45 -11.10 9.02 -37.79 -0.34 -11.44 15 9 H 0.09 2.02 7.90 -52.49 -0.41 1.61 15 10 C 0.07 1.69 5.13 -17.35 -0.09 1.61 15 11 N -0.78 -19.51 10.98 55.54 0.61 -18.90 15 12 Si 0.91 17.74 29.59 -169.99 -5.03 12.71 15 13 H -0.27 -5.12 7.11 56.52 0.40 -4.71 15 14 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 15 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 16 C -0.05 -1.16 8.19 -38.49 -0.32 -1.47 15 17 C -0.15 -3.46 5.88 -104.85 -0.62 -4.08 15 18 C 0.38 7.89 11.29 34.21 0.39 8.27 15 19 O -0.47 -10.97 17.11 5.54 0.09 -10.87 15 20 C -0.20 -4.35 6.38 -37.49 -0.24 -4.59 15 21 S 0.00 -0.05 21.26 -107.50 -2.29 -2.34 15 22 H 0.10 0.80 8.14 -51.93 -0.42 0.37 15 23 H 0.06 0.59 8.01 -51.93 -0.42 0.17 15 24 H 0.06 0.60 8.01 -51.93 -0.42 0.18 15 25 H 0.14 2.41 8.06 -52.48 -0.42 1.98 15 26 H 0.10 2.27 8.06 -52.49 -0.42 1.85 15 27 H 0.29 6.56 8.30 -40.82 -0.34 6.22 15 28 H 0.14 3.77 5.73 -52.49 -0.30 3.47 15 29 H 0.08 1.33 7.67 -52.49 -0.40 0.93 15 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -27.64 275.70 -6.99 -34.63 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -2.35 Total: 2.70 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -1.98 Total: -17.33 kcal Atomic # 7 Polarization: -19.51 SS G_CDS: 0.61 Total: -18.90 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.10 Total: -15.63 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.64 -6.99 -34.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340738.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.366 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds