Wall clock time and date at job start Mon Mar 30 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36095 * 116.99674 * 2 1 4 4 C 1.33323 * 122.17508 * 359.97335 * 3 2 1 5 5 S 1.75451 * 110.67410 * 180.02562 * 4 3 2 6 6 C 1.76221 * 91.61557 * 359.97438 * 5 4 3 7 7 C 1.39870 * 130.05333 * 180.02562 * 6 5 4 8 8 C 1.37331 * 122.50835 * 179.97438 * 7 6 5 9 9 C 1.39785 * 120.89877 * 359.97438 * 8 7 6 10 10 C 1.46237 * 120.46646 * 179.72321 * 9 8 7 11 11 O 1.21400 * 120.00017 * 174.77200 * 10 9 8 12 12 C 1.46473 * 119.05951 * 359.97438 * 9 8 7 13 13 C 1.39719 * 120.72233 * 179.97438 * 12 9 8 14 14 H 1.08001 * 120.00117 * 308.23710 * 13 12 9 15 15 C 1.40425 * 119.99935 * 128.24716 * 13 12 9 16 16 N 1.30574 * 120.00230 * 345.55510 * 15 13 12 17 17 Si 1.86801 * 120.00340 * 165.55737 * 15 13 12 18 18 H 1.48497 * 109.47177 * 59.99702 * 17 15 13 19 19 H 1.48496 * 109.47064 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46988 * 299.99764 * 17 15 13 21 21 C 1.39982 * 109.26877 * 0.02562 * 6 5 4 22 22 H 1.09003 * 109.46978 * 300.00247 * 1 2 3 23 23 H 1.08999 * 109.47056 * 60.00491 * 1 2 3 24 24 H 1.08999 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.08001 * 124.66015 * 0.02562 * 4 3 2 26 26 H 1.07997 * 118.74474 * 359.96241 * 7 6 5 27 27 H 1.07997 * 119.54810 * 180.02562 * 8 7 6 28 28 H 1.08000 * 120.00492 * 354.77011 * 10 9 8 29 29 H 0.96994 * 120.00557 * 175.18360 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.3636 2.3575 -0.0005 5 16 2.4557 3.7306 -0.0011 6 6 3.8653 2.6730 0.0002 7 6 5.2278 2.9892 0.0010 8 6 6.2085 2.0279 0.0025 9 6 5.8815 0.6688 0.0038 10 6 6.9335 -0.3470 -0.0007 11 8 6.6434 -1.5218 0.0964 12 6 4.4703 0.2766 0.0042 13 6 4.1042 -1.0718 0.0051 14 1 4.5212 -1.7450 -0.7292 15 6 3.1938 -1.5515 0.9605 16 7 2.9057 -0.8283 2.0088 17 14 2.3947 -3.2245 0.7320 18 1 3.4458 -4.2721 0.6802 19 1 1.4811 -3.4963 1.8707 20 1 1.6224 -3.2350 -0.5363 21 6 3.4417 1.3388 0.0004 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2860 2.4297 -0.0006 26 1 5.5197 4.0290 0.0002 27 1 7.2465 2.3260 0.0034 28 1 7.9686 -0.0521 -0.0903 29 1 2.2257 -1.1273 2.6325 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:19 Heat of formation + Delta-G solvation = -38.992474 kcal Electronic energy + Delta-G solvation = -17555.039523 eV Core-core repulsion = 14727.780553 eV Total energy + Delta-G solvation = -2827.258970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66348 -39.46567 -38.03314 -35.61083 -34.57332 -31.69927 -30.09461 -28.37899 -27.28168 -24.95069 -23.50627 -22.11987 -20.49483 -19.70422 -18.00409 -17.84075 -17.16168 -16.58132 -16.44200 -16.27716 -15.84723 -14.96602 -14.82709 -14.60130 -14.38096 -13.90278 -13.68005 -13.39093 -13.06411 -12.89043 -12.75308 -12.35758 -12.21421 -12.14860 -11.85067 -11.41863 -11.10543 -10.93485 -10.08574 -9.47673 -9.11732 -8.79489 -8.06418 -6.41483 -0.04142 0.54058 0.89884 1.28770 1.33641 1.42695 1.43431 1.58660 2.20374 2.21356 2.72109 2.86349 3.46543 3.84548 4.20791 4.29693 4.39089 4.40095 4.61830 4.65926 4.72394 4.91477 5.02908 5.17743 5.23297 5.34536 5.60973 5.83277 5.87289 6.15128 6.36537 6.65418 6.77099 6.82275 7.23642 8.25443 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.013136 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.031114 B = 2131.007187 C = 3670.739935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.296 6.296 3 C 0.182 3.818 4 C -0.388 4.388 5 S 0.084 5.916 6 C -0.074 4.074 7 C -0.235 4.235 8 C 0.009 3.991 9 C -0.352 4.352 10 C 0.375 3.625 11 O -0.525 6.525 12 C 0.181 3.819 13 C -0.427 4.427 14 H 0.074 0.926 15 C 0.079 3.921 16 N -0.786 5.786 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.259 1.259 20 H -0.251 1.251 21 C -0.183 4.183 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.174 0.826 26 H 0.131 0.869 27 H 0.157 0.843 28 H 0.126 0.874 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.738 4.858 -2.161 5.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.209 6.209 3 C 0.126 3.874 4 C -0.521 4.521 5 S 0.344 5.656 6 C -0.190 4.190 7 C -0.260 4.260 8 C -0.012 4.012 9 C -0.357 4.357 10 C 0.242 3.758 11 O -0.406 6.406 12 C 0.175 3.825 13 C -0.454 4.454 14 H 0.092 0.908 15 C -0.142 4.142 16 N -0.410 5.410 17 Si 0.778 3.222 18 H -0.200 1.200 19 H -0.183 1.183 20 H -0.175 1.175 21 C -0.191 4.191 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.122 0.878 25 H 0.191 0.809 26 H 0.148 0.852 27 H 0.174 0.826 28 H 0.142 0.858 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.250 5.582 -1.849 6.719 hybrid contribution -0.634 -1.944 0.114 2.048 sum -3.884 3.638 -1.736 5.598 Atomic orbital electron populations 1.23209 0.79063 1.04152 1.01664 1.86346 1.20908 1.25736 1.87912 1.17608 0.90817 0.84657 0.94307 1.24664 1.03371 0.94678 1.29427 1.82984 0.94122 1.07678 1.80838 1.22850 0.98819 0.95027 1.02269 1.19859 0.88872 0.99654 1.17574 1.21102 0.99443 0.90574 0.90084 1.21897 0.93982 0.95586 1.24209 1.23784 0.94061 0.87047 0.70910 1.90474 1.87381 1.22894 1.39862 1.19779 0.89379 0.91678 0.81671 1.19388 1.20071 0.94227 1.11695 0.90808 1.26261 0.93059 1.02326 0.92526 1.69601 1.23761 1.39521 1.08099 0.85655 0.78815 0.77843 0.79893 1.19977 1.18313 1.17522 1.18976 0.91275 0.93360 1.15513 0.92639 0.91845 0.87843 0.80912 0.85151 0.82590 0.85841 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.46 9.91 113.37 1.12 1.59 15 2 O -0.30 -13.17 6.20 -94.63 -0.59 -13.76 15 3 C 0.18 8.44 6.06 21.60 0.13 8.57 15 4 C -0.39 -15.45 9.99 66.71 0.67 -14.78 15 5 S 0.08 3.14 23.29 -56.49 -1.32 1.83 15 6 C -0.07 -3.28 6.48 23.09 0.15 -3.13 15 7 C -0.24 -9.27 9.93 22.45 0.22 -9.05 15 8 C 0.01 0.34 9.72 22.43 0.22 0.56 15 9 C -0.35 -16.29 6.05 -18.68 -0.11 -16.41 15 10 C 0.37 15.94 11.40 69.90 0.80 16.74 15 11 O -0.53 -27.05 15.03 -3.40 -0.05 -27.10 15 12 C 0.18 9.66 5.46 -18.22 -0.10 9.56 15 13 C -0.43 -23.52 6.61 23.16 0.15 -23.36 15 14 H 0.07 4.23 7.08 -2.91 -0.02 4.21 15 15 C 0.08 4.02 3.10 85.41 0.26 4.29 15 16 N -0.79 -41.00 11.46 21.91 0.25 -40.75 15 17 Si 0.96 40.01 29.25 68.60 2.01 42.02 15 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 20 H -0.25 -10.03 7.11 99.48 0.71 -9.32 15 21 C -0.18 -9.24 5.55 -19.87 -0.11 -9.35 15 22 H 0.05 1.66 7.82 -2.39 -0.02 1.64 15 23 H 0.06 1.78 7.82 -2.39 -0.02 1.76 15 24 H 0.10 2.88 8.14 -2.39 -0.02 2.86 15 25 H 0.17 5.78 6.90 -2.91 -0.02 5.76 15 26 H 0.13 4.24 8.06 -2.91 -0.02 4.21 15 27 H 0.16 4.27 8.06 -2.91 -0.02 4.24 15 28 H 0.13 3.75 8.06 -2.91 -0.02 3.73 15 29 H 0.29 13.89 8.30 -92.71 -0.77 13.12 15 Total: -1.00 -65.53 267.07 4.89 -60.64 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.18 Total: 11.89 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.40 Total: -34.77 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.25 Total: -40.75 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.64 Total: -40.86 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.01 Total: 42.02 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.32 Total: 1.83 kcal Total: -65.53 4.89 -60.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.644 kcal (2) G-P(sol) polarization free energy of solvation -65.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds