Wall clock time and date at job start Mon Mar 30 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35641 * 117.00362 * 2 1 4 4 C 1.37342 * 120.37074 * 359.73084 * 3 2 1 5 5 C 1.40178 * 120.82580 * 179.69638 * 4 3 2 6 6 S 1.76214 * 129.72795 * 180.24459 * 5 4 3 7 7 C 1.75411 * 91.71229 * 180.30620 * 6 5 4 8 8 C 1.41610 * 124.62114 * 180.02562 * 7 6 5 9 9 O 1.21404 * 120.00210 * 359.97438 * 8 7 6 10 10 C 1.34038 * 110.75051 * 0.02562 * 7 6 5 11 11 C 1.40527 * 115.55553 * 359.97438 * 10 7 6 12 12 C 1.40978 * 128.01460 * 179.97438 * 11 10 7 13 13 C 1.39682 * 120.34735 * 179.97438 * 12 11 10 14 14 C 1.41100 * 120.35135 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99959 * 204.77582 * 14 13 12 16 16 C 1.39898 * 120.00135 * 24.77204 * 14 13 12 17 17 N 1.30903 * 119.99695 * 17.84537 * 16 14 13 18 18 Si 1.86801 * 120.00139 * 197.84805 * 16 14 13 19 19 H 1.48495 * 109.47002 * 89.99860 * 18 16 14 20 20 H 1.48499 * 109.46772 * 210.00289 * 18 16 14 21 21 H 1.48497 * 109.46806 * 329.99929 * 18 16 14 22 22 H 1.09003 * 109.47041 * 59.99601 * 1 2 3 23 23 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46944 * 299.99838 * 1 2 3 25 25 H 1.07992 * 119.58636 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.99821 * 179.97438 * 8 7 6 27 27 H 1.08002 * 122.21789 * 179.97438 * 10 7 6 28 28 H 1.08001 * 119.82258 * 359.97438 * 12 11 10 29 29 H 0.96993 * 119.99632 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.3044 2.3652 -0.0056 5 6 1.9309 3.6192 0.0008 6 16 1.2219 5.2324 0.0016 7 6 2.8060 5.9859 0.0018 8 6 3.0320 7.3838 0.0030 9 8 2.0910 8.1509 0.0035 10 6 3.7732 5.0579 0.0008 11 6 3.3330 3.7234 0.0003 12 6 4.1157 2.5509 -0.0013 13 6 3.5051 1.2946 -0.0011 14 6 4.2885 0.1211 -0.0021 15 1 3.8816 -0.7994 -0.3939 16 6 5.5923 0.1499 0.5043 17 7 5.9703 1.1317 1.2832 18 14 6.7937 -1.2126 0.0689 19 1 7.5311 -0.8461 -1.1668 20 1 7.7570 -1.3979 1.1837 21 1 6.0479 -2.4768 -0.1562 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2260 2.3080 -0.0104 26 1 4.0415 7.7676 0.0035 27 1 4.8213 5.3186 0.0003 28 1 5.1932 2.6245 -0.0028 29 1 6.8741 1.1515 1.6346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340910.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:55 Heat of formation + Delta-G solvation = -36.055596 kcal Electronic energy + Delta-G solvation = -16534.696175 eV Core-core repulsion = 13707.564557 eV Total energy + Delta-G solvation = -2827.131618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.07643 -38.63241 -37.15287 -34.69712 -32.94582 -29.96877 -28.81368 -26.91267 -25.71834 -23.84319 -22.00995 -20.38186 -19.87970 -17.65995 -17.23755 -16.36787 -15.67587 -15.37400 -14.97607 -14.51523 -14.37031 -14.06849 -13.99719 -13.08727 -12.74019 -12.43768 -12.35088 -11.94433 -11.56744 -11.33013 -11.16335 -11.03086 -10.74853 -10.47730 -10.17544 -9.69031 -9.60126 -9.50152 -9.25296 -8.57422 -7.28008 -6.95761 -6.83573 -4.45598 0.87399 2.30714 2.42865 2.66112 2.83388 2.98932 3.01587 3.03758 3.49492 3.81410 4.06537 4.35442 4.84226 5.24131 5.50750 5.59278 5.61193 5.65959 5.81479 5.93144 6.16808 6.24451 6.39435 6.69971 6.89135 6.98839 7.06070 7.38469 7.55027 7.73435 7.79238 8.07822 8.41674 8.57089 8.69645 9.99253 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.006735 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.258437 B = 4156.390336 C = 5404.016671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.091 3.909 4 C -0.182 4.182 5 C -0.170 4.170 6 S 0.070 5.930 7 C -0.315 4.315 8 C 0.409 3.591 9 O -0.484 6.484 10 C -0.010 4.010 11 C -0.091 4.091 12 C -0.136 4.136 13 C 0.098 3.902 14 C -0.437 4.437 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.787 5.787 18 Si 0.914 3.086 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.260 1.260 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 1.020 -1.693 2.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.043 3.957 4 C -0.205 4.205 5 C -0.286 4.286 6 S 0.334 5.666 7 C -0.431 4.431 8 C 0.271 3.729 9 O -0.362 6.362 10 C -0.046 4.046 11 C -0.096 4.096 12 C -0.160 4.160 13 C 0.094 3.906 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.146 4.146 17 N -0.412 5.412 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.184 1.184 22 H 0.064 0.936 23 H 0.108 0.892 24 H 0.065 0.935 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.502 1.943 -1.538 4.290 hybrid contribution 1.764 -1.079 -0.013 2.068 sum -1.737 0.864 -1.550 2.484 Atomic orbital electron populations 1.22900 0.80626 1.02607 1.00608 1.86008 1.19226 1.27618 1.88670 1.20533 0.92618 0.82370 1.00187 1.19816 0.97658 0.90142 1.12927 1.22068 0.95776 0.95380 1.15388 1.83627 1.06374 0.96585 1.79993 1.23339 0.98295 0.99661 1.21809 1.21883 0.94224 0.86301 0.70500 1.90532 1.47599 1.60527 1.37498 1.20615 0.99222 0.91822 0.92909 1.18104 0.91957 0.93364 1.06192 1.20978 0.98989 0.88204 1.07817 1.17821 0.85699 0.94007 0.93082 1.19450 0.96476 0.96576 1.34064 0.89453 1.25932 0.98972 0.97179 0.92551 1.69823 1.19486 1.30466 1.21390 0.86196 0.79619 0.81269 0.79101 1.19095 1.20189 1.18423 0.93559 0.89240 0.93479 0.87514 0.88203 0.84417 0.84754 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 15 2 O -0.30 -6.32 9.95 -18.62 -0.19 -6.51 15 3 C 0.09 2.08 6.87 -36.68 -0.25 1.83 15 4 C -0.18 -3.90 9.06 -39.18 -0.35 -4.25 15 5 C -0.17 -3.72 6.49 -37.97 -0.25 -3.97 15 6 S 0.07 1.37 22.92 -107.50 -2.46 -1.09 15 7 C -0.32 -5.76 6.12 -39.77 -0.24 -6.01 15 8 C 0.41 6.51 11.33 32.02 0.36 6.87 15 9 O -0.48 -9.20 17.60 5.45 0.10 -9.11 15 10 C -0.01 -0.20 9.99 -40.20 -0.40 -0.60 15 11 C -0.09 -2.01 5.84 -107.11 -0.63 -2.64 15 12 C -0.14 -3.26 8.72 -38.01 -0.33 -3.59 15 13 C 0.10 2.43 5.70 -105.04 -0.60 1.83 15 14 C -0.44 -10.81 8.79 -37.88 -0.33 -11.14 15 15 H 0.09 2.13 7.74 -52.49 -0.41 1.73 15 16 C 0.07 1.68 5.13 -17.33 -0.09 1.59 15 17 N -0.79 -18.71 10.98 55.55 0.61 -18.10 15 18 Si 0.91 17.44 29.60 -169.99 -5.03 12.41 15 19 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 20 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 22 H 0.05 0.65 7.65 -51.93 -0.40 0.25 15 23 H 0.09 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.05 0.68 7.68 -51.93 -0.40 0.28 15 25 H 0.11 2.01 6.25 -52.49 -0.33 1.68 15 26 H 0.10 1.14 8.06 -52.49 -0.42 0.72 15 27 H 0.14 2.11 8.06 -52.49 -0.42 1.68 15 28 H 0.13 3.25 6.14 -52.49 -0.32 2.92 15 29 H 0.28 6.12 8.30 -40.82 -0.34 5.78 15 LS Contribution 274.23 15.07 4.13 4.13 Total: -1.00 -27.94 274.23 -7.22 -35.15 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -2.25 Total: 1.75 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.12 Total: -18.65 kcal Atomic # 7 Polarization: -18.71 SS G_CDS: 0.61 Total: -18.10 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.09 Total: -15.61 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.46 Total: -1.09 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.94 -7.22 -35.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340910.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.902 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds