Wall clock time and date at job start Mon Mar 30 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35641 * 117.00362 * 2 1 4 4 C 1.37342 * 120.37074 * 359.73084 * 3 2 1 5 5 C 1.40178 * 120.82580 * 179.69638 * 4 3 2 6 6 S 1.76214 * 129.72795 * 180.24459 * 5 4 3 7 7 C 1.75411 * 91.71229 * 180.30620 * 6 5 4 8 8 C 1.41610 * 124.62114 * 180.02562 * 7 6 5 9 9 O 1.21404 * 120.00210 * 359.97438 * 8 7 6 10 10 C 1.34038 * 110.75051 * 0.02562 * 7 6 5 11 11 C 1.40527 * 115.55553 * 359.97438 * 10 7 6 12 12 C 1.40978 * 128.01460 * 179.97438 * 11 10 7 13 13 C 1.39682 * 120.34735 * 179.97438 * 12 11 10 14 14 C 1.41100 * 120.35135 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99959 * 204.77582 * 14 13 12 16 16 C 1.39898 * 120.00135 * 24.77204 * 14 13 12 17 17 N 1.30903 * 119.99695 * 17.84537 * 16 14 13 18 18 Si 1.86801 * 120.00139 * 197.84805 * 16 14 13 19 19 H 1.48495 * 109.47002 * 89.99860 * 18 16 14 20 20 H 1.48499 * 109.46772 * 210.00289 * 18 16 14 21 21 H 1.48497 * 109.46806 * 329.99929 * 18 16 14 22 22 H 1.09003 * 109.47041 * 59.99601 * 1 2 3 23 23 H 1.09001 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46944 * 299.99838 * 1 2 3 25 25 H 1.07992 * 119.58636 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.99821 * 179.97438 * 8 7 6 27 27 H 1.08002 * 122.21789 * 179.97438 * 10 7 6 28 28 H 1.08001 * 119.82258 * 359.97438 * 12 11 10 29 29 H 0.96993 * 119.99632 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.3044 2.3652 -0.0056 5 6 1.9309 3.6192 0.0008 6 16 1.2219 5.2324 0.0016 7 6 2.8060 5.9859 0.0018 8 6 3.0320 7.3838 0.0030 9 8 2.0910 8.1509 0.0035 10 6 3.7732 5.0579 0.0008 11 6 3.3330 3.7234 0.0003 12 6 4.1157 2.5509 -0.0013 13 6 3.5051 1.2946 -0.0011 14 6 4.2885 0.1211 -0.0021 15 1 3.8816 -0.7994 -0.3939 16 6 5.5923 0.1499 0.5043 17 7 5.9703 1.1317 1.2832 18 14 6.7937 -1.2126 0.0689 19 1 7.5311 -0.8461 -1.1668 20 1 7.7570 -1.3979 1.1837 21 1 6.0479 -2.4768 -0.1562 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2260 2.3080 -0.0104 26 1 4.0415 7.7676 0.0035 27 1 4.8213 5.3186 0.0003 28 1 5.1932 2.6245 -0.0028 29 1 6.8741 1.1515 1.6346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340910.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:54 Heat of formation + Delta-G solvation = -51.730169 kcal Electronic energy + Delta-G solvation = -16535.375875 eV Core-core repulsion = 13707.564557 eV Total energy + Delta-G solvation = -2827.811318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65893 -40.04654 -38.71142 -36.37090 -34.56934 -31.67993 -30.39503 -28.26545 -27.43235 -25.33378 -23.63565 -21.91874 -21.41989 -19.31439 -18.87969 -17.86987 -17.13814 -17.01645 -16.42637 -16.01211 -15.88670 -15.50896 -15.47562 -14.66043 -14.31944 -14.03664 -13.93897 -13.55560 -13.15586 -12.82723 -12.68340 -12.47785 -12.22804 -12.07889 -11.82785 -11.28450 -11.22814 -10.91060 -10.87130 -10.25893 -8.98646 -8.65975 -8.45527 -6.26586 -0.60751 0.72604 0.77592 1.10478 1.23588 1.43048 1.49479 1.55471 2.04392 2.23247 2.60141 2.64896 3.47499 3.61170 4.00915 4.33449 4.34417 4.40251 4.46295 4.64148 4.67681 4.70351 4.86752 5.04929 5.21182 5.27964 5.36178 5.70359 5.81465 6.03660 6.36222 6.46127 6.66782 6.80142 6.98010 8.30320 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.006735 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.258437 B = 4156.390336 C = 5404.016671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.324 6.324 3 C 0.078 3.922 4 C -0.185 4.185 5 C -0.188 4.188 6 S 0.070 5.930 7 C -0.309 4.309 8 C 0.418 3.582 9 O -0.513 6.513 10 C -0.013 4.013 11 C -0.106 4.106 12 C -0.153 4.153 13 C 0.065 3.935 14 C -0.471 4.471 15 H 0.077 0.923 16 C 0.038 3.962 17 N -0.815 5.815 18 Si 0.982 3.018 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.263 1.263 22 H 0.057 0.943 23 H 0.121 0.879 24 H 0.054 0.946 25 H 0.130 0.870 26 H 0.165 0.835 27 H 0.174 0.826 28 H 0.125 0.875 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.365 1.943 -1.842 3.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.238 6.238 3 C 0.030 3.970 4 C -0.209 4.209 5 C -0.304 4.304 6 S 0.334 5.666 7 C -0.425 4.425 8 C 0.281 3.719 9 O -0.392 6.392 10 C -0.047 4.047 11 C -0.112 4.112 12 C -0.176 4.176 13 C 0.062 3.938 14 C -0.500 4.500 15 H 0.095 0.905 16 C -0.178 4.178 17 N -0.441 5.441 18 Si 0.803 3.197 19 H -0.184 1.184 20 H -0.192 1.192 21 H -0.187 1.187 22 H 0.076 0.924 23 H 0.139 0.861 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.181 0.819 27 H 0.191 0.809 28 H 0.143 0.857 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.085 2.872 -1.685 4.539 hybrid contribution 1.482 -1.248 0.043 1.939 sum -1.603 1.623 -1.642 2.811 Atomic orbital electron populations 1.23256 0.77709 1.05077 1.01441 1.85961 1.22254 1.26987 1.88584 1.20594 0.92436 0.83514 1.00490 1.20066 0.98796 0.89759 1.12235 1.22421 0.96290 0.96634 1.15039 1.83617 1.07798 0.95270 1.79900 1.23847 0.97001 1.01188 1.20428 1.22650 0.96149 0.84543 0.68520 1.90542 1.49208 1.60775 1.38670 1.20805 1.01197 0.90091 0.92605 1.18424 0.92174 0.94498 1.06133 1.20933 0.98737 0.88849 1.09116 1.18212 0.87165 0.94599 0.93859 1.19578 0.97991 0.96436 1.35978 0.90467 1.26667 0.99844 0.99439 0.91836 1.69852 1.20267 1.32008 1.21929 0.85189 0.77292 0.78124 0.79103 1.18415 1.19175 1.18650 0.92434 0.86078 0.92761 0.85269 0.81915 0.80862 0.85718 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 15 2 O -0.32 -13.79 9.95 -89.55 -0.89 -14.68 15 3 C 0.08 3.66 6.87 24.15 0.17 3.83 15 4 C -0.18 -7.98 9.06 22.53 0.20 -7.78 15 5 C -0.19 -8.19 6.49 23.32 0.15 -8.04 15 6 S 0.07 2.66 22.92 -56.49 -1.29 1.37 15 7 C -0.31 -10.47 6.12 22.14 0.14 -10.34 15 8 C 0.42 11.67 11.33 68.65 0.78 12.44 15 9 O -0.51 -18.00 17.60 -3.41 -0.06 -18.06 15 10 C -0.01 -0.45 9.99 21.87 0.22 -0.23 15 11 C -0.11 -4.70 5.84 -21.47 -0.13 -4.83 15 12 C -0.15 -7.52 8.72 23.29 0.20 -7.31 15 13 C 0.07 3.38 5.70 -20.14 -0.11 3.26 15 14 C -0.47 -24.23 8.79 23.37 0.21 -24.03 15 15 H 0.08 3.96 7.74 -2.91 -0.02 3.94 15 16 C 0.04 1.80 5.13 85.23 0.44 2.24 15 17 N -0.82 -39.48 10.98 21.82 0.24 -39.24 15 18 Si 0.98 36.04 29.60 68.60 2.03 38.07 15 19 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 20 H -0.27 -9.30 7.11 99.48 0.71 -8.59 15 21 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 22 H 0.06 1.55 7.65 -2.39 -0.02 1.53 15 23 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 24 H 0.05 1.50 7.68 -2.39 -0.02 1.48 15 25 H 0.13 4.79 6.25 -2.91 -0.02 4.77 15 26 H 0.17 2.70 8.06 -2.91 -0.02 2.68 15 27 H 0.17 4.73 8.06 -2.91 -0.02 4.71 15 28 H 0.13 6.22 6.14 -2.91 -0.02 6.20 15 29 H 0.29 12.68 8.30 -92.71 -0.77 11.91 15 Total: -1.00 -62.26 274.23 4.59 -57.68 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.19 Total: 13.96 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 3.37 Total: -39.09 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.24 Total: -39.24 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.95 Total: -32.74 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.29 Total: 1.37 kcal Total: -62.26 4.59 -57.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340910.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.945 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds