Wall clock time and date at job start Mon Mar 30 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35567 * 116.99957 * 2 1 4 4 C 1.40673 * 120.09880 * 270.20818 * 3 2 1 5 5 C 1.46646 * 129.46327 * 0.02562 * 4 3 2 6 6 C 1.41626 * 123.20241 * 0.20991 * 5 4 3 7 7 O 1.21414 * 120.00289 * 180.02562 * 6 5 4 8 8 C 1.35341 * 113.60103 * 180.24408 * 5 4 3 9 9 S 1.69972 * 112.10883 * 0.02562 * 8 5 4 10 10 C 1.39455 * 119.35668 * 180.27248 * 4 3 2 11 11 C 1.40720 * 120.03400 * 359.74883 * 10 4 3 12 12 C 1.35626 * 121.01264 * 0.02562 * 11 10 4 13 13 C 1.40769 * 120.09390 * 89.99996 * 3 2 1 14 14 C 1.41005 * 120.18660 * 0.02562 * 13 3 2 15 15 H 1.08004 * 120.00053 * 28.65708 * 14 13 3 16 16 C 1.39848 * 120.00067 * 208.65891 * 14 13 3 17 17 N 1.30936 * 120.00291 * 197.75569 * 16 14 13 18 18 Si 1.86803 * 120.00028 * 17.75862 * 16 14 13 19 19 H 1.48508 * 109.46924 * 270.00248 * 18 16 14 20 20 H 1.48501 * 109.47073 * 29.99531 * 18 16 14 21 21 H 1.48498 * 109.47524 * 149.99865 * 18 16 14 22 22 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47367 * 299.99471 * 1 2 3 24 24 H 1.08998 * 109.47381 * 59.99632 * 1 2 3 25 25 H 1.08007 * 119.99569 * 0.02562 * 6 5 4 26 26 H 1.07997 * 123.94712 * 179.97438 * 8 5 4 27 27 H 1.08001 * 119.49485 * 179.97438 * 11 10 4 28 28 H 1.08002 * 119.92225 * 180.02562 * 12 11 10 29 29 H 0.96999 * 120.00099 * 355.43405 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2079 0.0000 4 6 2.3608 1.8385 -1.2170 5 6 2.1234 1.3847 -2.5912 6 6 1.4909 0.1568 -2.9041 7 8 1.3241 -0.1620 -4.0637 8 6 2.5669 2.2507 -3.5320 9 16 3.2808 3.6316 -2.8447 10 6 2.9990 3.0783 -1.1990 11 6 3.3159 3.6895 0.0283 12 6 3.0106 3.0911 1.2064 13 6 2.3649 1.8368 1.2179 14 6 2.0480 1.2137 2.4425 15 1 2.0030 0.1364 2.5045 16 6 1.7920 1.9907 3.5768 17 7 1.8419 1.4477 4.7672 18 14 1.3789 3.8032 3.3936 19 1 2.6299 4.6025 3.4335 20 1 0.6908 4.0254 2.0965 21 1 0.4878 4.2227 4.5049 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.1570 -0.4960 -2.1111 26 1 2.4783 2.0834 -4.5953 27 1 3.8106 4.6496 0.0321 28 1 3.2616 3.5762 2.1381 29 1 1.9907 0.4937 4.8593 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396341274.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:17 Heat of formation + Delta-G solvation = -55.091961 kcal Electronic energy + Delta-G solvation = -17203.572548 eV Core-core repulsion = 14375.615452 eV Total energy + Delta-G solvation = -2827.957096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.10983 -39.82007 -38.05662 -36.63703 -35.02102 -31.70130 -30.29422 -27.88381 -27.51424 -26.13931 -23.62907 -22.35423 -21.02441 -19.97963 -19.32865 -17.67514 -17.31048 -16.66360 -16.44544 -16.15012 -15.85297 -15.42260 -15.36690 -15.27346 -14.87720 -14.29578 -13.95798 -13.61898 -13.21394 -12.87314 -12.71924 -12.45777 -12.16825 -11.90004 -11.66598 -11.38255 -11.10248 -10.80998 -10.54593 -10.17771 -9.58686 -9.34543 -8.61641 -6.58190 -0.55708 0.43942 0.58708 0.64703 1.02642 1.35309 1.53164 1.72677 1.98489 2.14281 2.46406 3.02047 3.45193 3.66211 3.75052 4.11649 4.26586 4.43131 4.48372 4.56980 4.61869 4.76093 4.89432 4.93180 5.01761 5.24846 5.42403 5.43113 5.65860 5.84813 6.14157 6.30150 6.43833 6.67047 7.02873 7.89818 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.008416 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.673931 B = 3326.102332 C = 4250.215665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.336 6.336 3 C -0.040 4.040 4 C -0.021 4.021 5 C -0.241 4.241 6 C 0.403 3.597 7 O -0.512 6.512 8 C -0.142 4.142 9 S 0.241 5.759 10 C -0.279 4.279 11 C -0.035 4.035 12 C -0.209 4.209 13 C 0.072 3.928 14 C -0.510 4.510 15 H 0.052 0.948 16 C 0.012 3.988 17 N -0.827 5.827 18 Si 1.095 2.905 19 H -0.243 1.243 20 H -0.261 1.261 21 H -0.280 1.280 22 H 0.106 0.894 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.108 0.892 26 H 0.191 0.809 27 H 0.148 0.852 28 H 0.127 0.873 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.381 6.570 -9.275 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.087 4.087 4 C -0.027 4.027 5 C -0.259 4.259 6 C 0.266 3.734 7 O -0.392 6.392 8 C -0.280 4.280 9 S 0.509 5.491 10 C -0.393 4.393 11 C -0.056 4.056 12 C -0.230 4.230 13 C 0.068 3.932 14 C -0.539 4.539 15 H 0.070 0.930 16 C -0.203 4.203 17 N -0.449 5.449 18 Si 0.915 3.085 19 H -0.168 1.168 20 H -0.185 1.185 21 H -0.207 1.207 22 H 0.124 0.876 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.125 0.875 26 H 0.208 0.792 27 H 0.165 0.835 28 H 0.145 0.855 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.747 8.807 -9.544 13.008 hybrid contribution -0.562 -3.386 0.414 3.457 sum 0.185 5.420 -9.130 10.620 Atomic orbital electron populations 1.23026 0.80940 1.03097 0.99672 1.85888 1.19466 1.25990 1.93927 1.18295 1.08850 0.91502 0.90081 1.19103 0.98439 0.93586 0.91567 1.19830 1.12609 1.01412 0.92007 1.22478 0.73587 0.86212 0.91134 1.90456 1.48748 1.75028 1.25004 1.25853 0.98318 0.98858 1.04936 1.81998 1.57312 1.16962 0.92849 1.22477 1.17047 1.00815 0.98956 1.20181 0.97222 0.99113 0.89095 1.21018 1.05542 0.98105 0.98285 1.18033 0.90617 0.91992 0.92604 1.20439 1.43250 0.95297 0.94878 0.92974 1.28415 0.90230 1.11129 0.90543 1.70632 1.33631 1.15465 1.25194 0.83371 0.79000 0.68995 0.77111 1.16763 1.18518 1.20653 0.87605 0.95154 0.94058 0.87537 0.79225 0.83454 0.85548 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.04 113.37 1.14 2.13 15 2 O -0.34 -14.87 7.97 -88.75 -0.71 -15.58 15 3 C -0.04 -1.83 5.81 23.48 0.14 -1.69 15 4 C -0.02 -0.87 6.03 -20.20 -0.12 -0.99 15 5 C -0.24 -8.72 5.82 -20.92 -0.12 -8.85 15 6 C 0.40 14.59 10.59 68.66 0.73 15.31 15 7 O -0.51 -19.63 17.36 -3.44 -0.06 -19.69 15 8 C -0.14 -4.19 10.31 67.15 0.69 -3.50 15 9 S 0.24 6.36 22.97 -56.49 -1.30 5.06 15 10 C -0.28 -10.10 6.48 23.17 0.15 -9.95 15 11 C -0.04 -1.26 9.98 22.27 0.22 -1.04 15 12 C -0.21 -8.78 7.18 22.36 0.16 -8.62 15 13 C 0.07 3.45 5.13 -21.29 -0.11 3.35 15 14 C -0.51 -26.59 9.04 23.34 0.21 -26.38 15 15 H 0.05 2.99 7.86 -2.91 -0.02 2.96 15 16 C 0.01 0.62 5.41 85.22 0.46 1.08 15 17 N -0.83 -42.83 13.66 21.81 0.30 -42.53 15 18 Si 1.10 43.62 24.90 68.60 1.71 45.33 15 19 H -0.24 -8.48 6.43 99.48 0.64 -7.84 15 20 H -0.26 -10.24 7.03 99.48 0.70 -9.54 15 21 H -0.28 -10.85 7.11 99.48 0.71 -10.14 15 22 H 0.11 3.15 8.14 -2.38 -0.02 3.13 15 23 H 0.03 1.18 8.14 -2.38 -0.02 1.16 15 24 H 0.04 1.38 7.55 -2.39 -0.02 1.36 15 25 H 0.11 3.80 5.08 -2.91 -0.01 3.78 15 26 H 0.19 4.71 7.90 -2.91 -0.02 4.69 15 27 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 28 H 0.13 5.06 4.39 -2.91 -0.01 5.04 15 29 H 0.28 14.57 8.73 -92.71 -0.81 13.76 15 Total: -1.00 -58.70 265.12 4.57 -54.13 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.08 Total: 12.40 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 3.55 Total: -39.13 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.30 Total: -42.53 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.77 Total: -35.27 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.71 Total: 45.33 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -1.30 Total: 5.06 kcal Total: -58.70 4.57 -54.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341274.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.962 kcal (2) G-P(sol) polarization free energy of solvation -58.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds