Wall clock time and date at job start Mon Mar 30 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35974 * 117.00349 * 2 1 4 4 C 1.37530 * 119.69639 * 0.02562 * 3 2 1 5 5 C 1.40591 * 120.01832 * 180.02562 * 4 3 2 6 6 C 1.46893 * 119.92828 * 179.97438 * 5 4 3 7 7 O 1.21294 * 120.00398 * 180.02562 * 6 5 4 8 8 C 1.38765 * 120.14847 * 359.97438 * 5 4 3 9 9 C 1.41532 * 120.31065 * 0.02562 * 8 5 4 10 10 C 1.39976 * 128.31167 * 179.97438 * 9 8 5 11 11 C 1.36852 * 115.02331 * 180.02562 * 10 9 8 12 12 C 1.39952 * 124.80510 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99741 * 359.97438 * 12 11 10 14 14 C 1.40176 * 119.99975 * 179.97438 * 12 11 10 15 15 N 1.30764 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99893 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47244 * 89.99903 * 16 14 12 18 18 H 1.48498 * 109.47189 * 210.00091 * 16 14 12 19 19 H 1.48504 * 109.46933 * 329.99924 * 16 14 12 20 20 S 1.75433 * 110.39505 * 359.97438 * 11 10 9 21 21 C 1.40373 * 119.70065 * 179.72547 * 3 2 1 22 22 H 1.09001 * 109.47103 * 300.00231 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99735 * 1 2 3 24 24 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.98808 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.99846 * 359.97438 * 6 5 4 27 27 H 1.08000 * 119.84698 * 180.02562 * 8 5 4 28 28 H 1.08000 * 122.49315 * 359.97438 * 10 9 8 29 29 H 0.96999 * 120.00110 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2914 2.3610 0.0005 5 6 1.9227 3.6172 0.0000 6 6 1.1143 4.8437 0.0000 7 8 1.6575 5.9282 -0.0009 8 6 3.3078 3.7011 -0.0005 9 6 4.0946 2.5247 -0.0011 10 6 5.4900 2.4140 -0.0022 11 6 5.9690 1.1321 -0.0030 12 6 7.3251 0.7860 -0.0047 13 1 8.0796 1.5588 -0.0058 14 6 7.7040 -0.5635 -0.0049 15 7 6.7905 -1.4992 -0.0031 16 14 9.5140 -1.0254 -0.0078 17 1 9.9961 -1.1473 1.3915 18 1 9.6927 -2.3228 -0.7078 19 1 10.2922 0.0269 -0.7096 20 16 4.6427 -0.0162 -0.0018 21 6 3.4486 1.2776 0.0058 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2131 2.2986 0.0005 26 1 0.0361 4.7798 0.0000 27 1 3.7876 4.6686 -0.0005 28 1 6.1404 3.2763 -0.0031 29 1 7.0527 -2.4330 -0.0028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396341443.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:32 Heat of formation + Delta-G solvation = -55.587116 kcal Electronic energy + Delta-G solvation = -16443.000961 eV Core-core repulsion = 13615.022393 eV Total energy + Delta-G solvation = -2827.978568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45110 -38.38210 -36.87332 -34.84165 -33.06318 -29.83684 -29.07186 -26.98966 -25.68709 -24.14731 -21.75735 -20.71998 -19.08623 -18.21118 -16.80937 -16.18381 -15.92157 -15.27235 -15.23961 -14.55331 -14.38629 -14.04770 -13.74602 -13.39711 -12.67267 -12.43044 -12.24955 -11.76520 -11.70421 -11.47657 -11.21068 -10.93970 -10.70275 -10.52964 -10.27184 -10.21862 -9.43482 -9.35585 -9.09777 -8.10349 -7.58485 -7.26640 -6.37158 -4.80898 1.37110 1.98299 2.74656 2.80997 2.87449 3.03955 3.15659 3.52147 3.52796 3.77176 3.86898 4.52124 4.72397 4.95261 5.35119 5.43943 5.54767 5.65945 5.82061 5.98987 6.16007 6.50894 6.58137 6.71361 6.94090 6.99178 7.07568 7.32020 7.57362 7.65287 7.82473 7.89993 8.09902 8.18178 8.30849 9.56969 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.006118 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.896944 B = 4575.294343 C = 5601.044641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.178 3.822 4 C -0.249 4.249 5 C -0.158 4.158 6 C 0.387 3.613 7 O -0.479 6.479 8 C -0.098 4.098 9 C 0.026 3.974 10 C -0.355 4.355 11 C 0.046 3.954 12 C -0.378 4.378 13 H 0.101 0.899 14 C 0.052 3.948 15 N -0.773 5.773 16 Si 0.940 3.060 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.256 1.256 20 S 0.180 5.820 21 C -0.273 4.273 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -1.467 -0.001 6.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.130 3.870 4 C -0.271 4.271 5 C -0.162 4.162 6 C 0.248 3.752 7 O -0.355 6.355 8 C -0.118 4.118 9 C 0.017 3.983 10 C -0.379 4.379 11 C -0.074 4.074 12 C -0.412 4.412 13 H 0.119 0.881 14 C -0.170 4.170 15 N -0.400 5.400 16 Si 0.763 3.237 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.179 1.179 20 S 0.442 5.558 21 C -0.389 4.389 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.136 0.864 26 H 0.107 0.893 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.691 -2.908 -0.010 6.391 hybrid contribution 0.420 1.316 0.006 1.381 sum -5.271 -1.593 -0.004 5.506 Atomic orbital electron populations 1.22909 0.79746 1.02899 1.00856 1.86098 1.20217 1.27899 1.89045 1.17950 0.89605 0.83358 0.96111 1.20463 0.98010 0.91126 1.17524 1.19948 0.94305 0.94124 1.07808 1.23898 0.94411 0.87145 0.69743 1.90470 1.77233 1.31360 1.36435 1.21118 0.92032 0.97122 1.01525 1.17790 0.93187 0.90829 0.96474 1.19641 0.91788 0.95941 1.30547 1.21561 0.96914 0.94565 0.94362 1.19385 0.91556 0.92800 1.37447 0.88114 1.26358 1.02325 0.95966 0.92374 1.68594 1.35990 1.03174 1.32198 0.85720 0.79081 0.79048 0.79845 1.18703 1.19498 1.17923 1.85016 0.91163 1.03152 1.76483 1.23195 0.95076 1.01684 1.18924 0.93156 0.93164 0.89091 0.86413 0.89325 0.86591 0.87054 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.80 101.05 0.99 1.40 15 2 O -0.32 -6.14 10.46 -19.66 -0.21 -6.34 15 3 C 0.18 3.79 6.70 -39.04 -0.26 3.52 15 4 C -0.25 -4.61 8.76 -38.95 -0.34 -4.96 15 5 C -0.16 -3.06 5.85 -105.31 -0.62 -3.68 15 6 C 0.39 6.34 11.43 34.23 0.39 6.73 15 7 O -0.48 -9.34 17.11 5.55 0.09 -9.25 15 8 C -0.10 -2.16 9.63 -38.13 -0.37 -2.53 15 9 C 0.03 0.64 5.84 -107.16 -0.63 0.01 15 10 C -0.36 -8.93 10.14 -39.43 -0.40 -9.33 15 11 C 0.05 1.17 6.11 -39.44 -0.24 0.93 15 12 C -0.38 -9.13 9.27 -38.21 -0.35 -9.48 15 13 H 0.10 2.29 7.85 -52.49 -0.41 1.87 15 14 C 0.05 1.15 5.50 -17.28 -0.10 1.05 15 15 N -0.77 -17.69 10.58 55.56 0.59 -17.10 15 16 Si 0.94 16.48 29.56 -169.99 -5.03 11.46 15 17 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 18 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 19 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 20 S 0.18 4.43 20.08 -107.50 -2.16 2.27 15 21 C -0.27 -6.60 6.44 -37.94 -0.24 -6.84 15 22 H 0.05 0.59 7.64 -51.93 -0.40 0.19 15 23 H 0.05 0.59 7.64 -51.93 -0.40 0.19 15 24 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.12 1.71 6.21 -52.48 -0.33 1.39 15 26 H 0.09 1.05 8.06 -52.48 -0.42 0.62 15 27 H 0.12 2.50 7.59 -52.49 -0.40 2.10 15 28 H 0.11 2.67 8.06 -52.49 -0.42 2.25 15 29 H 0.30 6.17 8.29 -40.82 -0.34 5.83 15 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -28.33 274.07 -7.07 -35.40 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.33 Total: 2.59 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -2.16 Total: -23.16 kcal Atomic # 7 Polarization: -17.69 SS G_CDS: 0.59 Total: -17.10 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.11 Total: -15.59 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -2.16 Total: 2.27 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.33 -7.07 -35.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341443.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.184 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds