Wall clock time and date at job start Mon Mar 30 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35395 * 117.00024 * 2 1 4 4 C 1.40069 * 119.43169 * 89.99683 * 3 2 1 5 5 S 1.76117 * 130.37988 * 0.04880 * 4 3 2 6 6 C 1.75513 * 91.47337 * 179.97438 * 5 4 3 7 7 C 1.32833 * 110.58828 * 359.97438 * 6 5 4 8 8 C 1.39522 * 120.25398 * 180.02562 * 4 3 2 9 9 C 1.48177 * 118.42707 * 0.02562 * 8 4 3 10 10 C 1.40632 * 120.17803 * 179.72434 * 9 8 4 11 11 H 1.08008 * 120.00127 * 334.31376 * 10 9 8 12 12 C 1.39908 * 120.00190 * 154.31351 * 10 9 8 13 13 N 1.30904 * 119.99922 * 342.68736 * 12 10 9 14 14 Si 1.86806 * 120.00115 * 162.68931 * 12 10 9 15 15 H 1.48504 * 109.47045 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47127 * 119.99756 * 14 12 10 17 17 H 1.48496 * 109.46827 * 240.00097 * 14 12 10 18 18 C 1.39732 * 119.64491 * 359.97438 * 9 8 4 19 19 C 1.39566 * 120.02576 * 359.96360 * 18 9 8 20 20 C 1.46592 * 119.74271 * 179.97438 * 19 18 9 21 21 O 1.21333 * 119.99486 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46945 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47164 * 300.00350 * 1 2 3 24 24 H 1.08997 * 109.46906 * 60.00410 * 1 2 3 25 25 H 1.08002 * 124.70542 * 180.02562 * 6 5 4 26 26 H 1.08001 * 122.07144 * 180.02562 * 7 6 5 27 27 H 0.97005 * 120.00147 * 179.97438 * 13 12 10 28 28 H 1.08007 * 119.98985 * 180.02562 * 18 9 8 29 29 H 1.07997 * 120.00363 * 0.06174 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2064 0.0000 4 6 2.3561 1.8197 1.2199 5 16 2.0811 1.2776 2.8729 6 6 2.8215 2.7311 3.5208 7 6 3.2267 3.5270 2.5375 8 6 2.9890 3.0629 1.2399 9 6 3.3167 3.7085 -0.0529 10 6 3.9494 4.9643 -0.0757 11 1 3.8351 5.6418 0.7577 12 6 4.7268 5.3360 -1.1779 13 7 5.1479 4.4255 -2.0188 14 14 5.1640 7.1318 -1.4495 15 1 4.5701 7.9552 -0.3657 16 1 6.6405 7.2889 -1.4385 17 1 4.6282 7.5788 -2.7603 18 6 2.9891 3.0653 -1.2493 19 6 2.3572 1.8211 -1.2230 20 6 2.0158 1.1521 -2.4819 21 8 1.4660 0.0706 -2.4643 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 2.9329 2.9479 4.5729 26 1 3.7096 4.4740 2.7284 27 1 5.6867 4.6832 -2.7832 28 1 3.2258 3.5306 -2.1948 29 1 2.2541 1.6215 -3.4248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396341993.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:34 Heat of formation + Delta-G solvation = -34.431359 kcal Electronic energy + Delta-G solvation = -17060.457861 eV Core-core repulsion = 14233.396676 eV Total energy + Delta-G solvation = -2827.061185 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19234 -37.51933 -36.75124 -34.71734 -33.10866 -29.74617 -28.84863 -26.62505 -24.83126 -23.79543 -22.11792 -20.51572 -19.41177 -17.84643 -17.09325 -15.98154 -15.22303 -15.12116 -14.86861 -14.64607 -14.11989 -13.75011 -13.41761 -13.18880 -12.65485 -12.40661 -12.38902 -11.88526 -11.54196 -11.40037 -11.19868 -10.81239 -10.75995 -10.28534 -10.08266 -9.75968 -9.49518 -9.26109 -8.70933 -8.35165 -7.55252 -7.25505 -6.91174 -4.64355 1.26107 2.32657 2.51409 2.63427 2.84544 2.89645 2.94141 2.95540 3.59438 3.65979 4.14168 4.80161 5.10253 5.23791 5.71460 5.93628 6.01041 6.04004 6.19363 6.22835 6.30984 6.44744 6.61987 6.80479 6.85163 6.98859 7.17430 7.40001 7.49557 7.61436 8.05543 8.20089 8.30469 8.33783 8.66122 9.65464 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.008586 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.215293 B = 3260.265662 C = 4580.276469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.316 6.316 3 C 0.025 3.975 4 C -0.098 4.098 5 S 0.027 5.973 6 C -0.265 4.265 7 C -0.067 4.067 8 C -0.159 4.159 9 C 0.136 3.864 10 C -0.417 4.417 11 H 0.091 0.909 12 C 0.070 3.930 13 N -0.765 5.765 14 Si 0.919 3.081 15 H -0.256 1.256 16 H -0.269 1.269 17 H -0.266 1.266 18 C -0.133 4.133 19 C -0.148 4.148 20 C 0.381 3.619 21 O -0.465 6.465 22 H 0.075 0.925 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.149 0.851 26 H 0.129 0.871 27 H 0.291 0.709 28 H 0.135 0.865 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 1.968 1.323 3.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.232 6.232 3 C -0.026 4.026 4 C -0.213 4.213 5 S 0.288 5.712 6 C -0.399 4.399 7 C -0.097 4.097 8 C -0.166 4.166 9 C 0.131 3.869 10 C -0.444 4.444 11 H 0.109 0.891 12 C -0.152 4.152 13 N -0.387 5.387 14 Si 0.742 3.258 15 H -0.179 1.179 16 H -0.194 1.194 17 H -0.191 1.191 18 C -0.155 4.155 19 C -0.152 4.152 20 C 0.241 3.759 21 O -0.339 6.339 22 H 0.094 0.906 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.166 0.834 26 H 0.147 0.853 27 H 0.103 0.897 28 H 0.153 0.847 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.175 -0.059 1.884 3.692 hybrid contribution 0.915 2.309 -0.680 2.575 sum -2.260 2.250 1.204 3.409 Atomic orbital electron populations 1.22727 0.82285 1.01178 0.98973 1.85980 1.17844 1.25374 1.93972 1.17336 1.06950 0.89402 0.88931 1.22584 1.05669 0.97989 0.95085 1.83657 1.66044 1.23245 0.98233 1.24760 1.13335 0.99947 1.01828 1.19722 0.99168 0.99723 0.91108 1.19112 1.09387 0.94330 0.93760 1.18347 0.88682 0.91650 0.88270 1.19704 1.22356 0.99813 1.02541 0.89134 1.26133 0.93985 1.00613 0.94486 1.69824 1.22871 1.35451 1.10579 0.86053 0.79126 0.80760 0.79874 1.17894 1.19442 1.19116 1.21267 1.01633 0.93741 0.98891 1.20637 1.04223 0.96841 0.93478 1.23861 0.74171 0.85175 0.92715 1.90469 1.31674 1.20849 1.90932 0.90598 0.95238 0.94680 0.83352 0.85346 0.89730 0.84750 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.42 101.05 1.05 1.89 15 2 O -0.32 -7.26 8.69 -40.29 -0.35 -7.61 15 3 C 0.02 0.59 5.75 -38.07 -0.22 0.37 15 4 C -0.10 -2.29 6.41 -38.42 -0.25 -2.54 15 5 S 0.03 0.54 23.26 -107.50 -2.50 -1.96 15 6 C -0.27 -5.03 11.12 28.87 0.32 -4.70 15 7 C -0.07 -1.40 9.73 -40.84 -0.40 -1.80 15 8 C -0.16 -3.73 6.01 -104.74 -0.63 -4.36 15 9 C 0.14 3.26 5.74 -104.35 -0.60 2.66 15 10 C -0.42 -9.49 8.78 -38.05 -0.33 -9.83 15 11 H 0.09 1.96 7.49 -52.48 -0.39 1.57 15 12 C 0.07 1.49 5.12 -17.32 -0.09 1.40 15 13 N -0.76 -16.80 11.00 55.55 0.61 -16.19 15 14 Si 0.92 15.83 29.59 -169.99 -5.03 10.80 15 15 H -0.26 -4.39 7.11 56.52 0.40 -3.99 15 16 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 17 H -0.27 -4.52 7.11 56.52 0.40 -4.11 15 18 C -0.13 -3.07 8.37 -38.53 -0.32 -3.39 15 19 C -0.15 -3.35 5.86 -105.21 -0.62 -3.97 15 20 C 0.38 7.64 11.40 34.10 0.39 8.03 15 21 O -0.46 -10.24 14.62 -16.91 -0.25 -10.49 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.03 0.66 7.45 -51.93 -0.39 0.28 15 25 H 0.15 2.32 8.06 -52.49 -0.42 1.89 15 26 H 0.13 2.42 7.68 -52.49 -0.40 2.02 15 27 H 0.29 5.69 8.30 -40.82 -0.34 5.36 15 28 H 0.13 3.00 6.18 -52.48 -0.32 2.68 15 29 H 0.09 1.44 8.06 -52.49 -0.42 1.01 15 LS Contribution 272.72 15.07 4.11 4.11 Total: -1.00 -26.75 272.72 -7.43 -34.18 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -2.33 Total: 3.40 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.69 Total: -16.25 kcal Atomic # 7 Polarization: -16.80 SS G_CDS: 0.61 Total: -16.19 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.60 Total: -18.10 kcal Atomic # 14 Polarization: 15.83 SS G_CDS: -5.03 Total: 10.80 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.50 Total: -1.96 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.75 -7.43 -34.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341993.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.247 kcal (2) G-P(sol) polarization free energy of solvation -26.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds