Wall clock time and date at job start Mon Mar 30 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35395 * 117.00024 * 2 1 4 4 C 1.40069 * 119.43169 * 89.99683 * 3 2 1 5 5 S 1.76117 * 130.37988 * 0.04880 * 4 3 2 6 6 C 1.75513 * 91.47337 * 179.97438 * 5 4 3 7 7 C 1.32833 * 110.58828 * 359.97438 * 6 5 4 8 8 C 1.39522 * 120.25398 * 180.02562 * 4 3 2 9 9 C 1.48177 * 118.42707 * 0.02562 * 8 4 3 10 10 C 1.40632 * 120.17803 * 179.72434 * 9 8 4 11 11 H 1.08008 * 120.00127 * 334.31376 * 10 9 8 12 12 C 1.39908 * 120.00190 * 154.31351 * 10 9 8 13 13 N 1.30904 * 119.99922 * 342.68736 * 12 10 9 14 14 Si 1.86806 * 120.00115 * 162.68931 * 12 10 9 15 15 H 1.48504 * 109.47045 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47127 * 119.99756 * 14 12 10 17 17 H 1.48496 * 109.46827 * 240.00097 * 14 12 10 18 18 C 1.39732 * 119.64491 * 359.97438 * 9 8 4 19 19 C 1.39566 * 120.02576 * 359.96360 * 18 9 8 20 20 C 1.46592 * 119.74271 * 179.97438 * 19 18 9 21 21 O 1.21333 * 119.99486 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46945 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47164 * 300.00350 * 1 2 3 24 24 H 1.08997 * 109.46906 * 60.00410 * 1 2 3 25 25 H 1.08002 * 124.70542 * 180.02562 * 6 5 4 26 26 H 1.08001 * 122.07144 * 180.02562 * 7 6 5 27 27 H 0.97005 * 120.00147 * 179.97438 * 13 12 10 28 28 H 1.08007 * 119.98985 * 180.02562 * 18 9 8 29 29 H 1.07997 * 120.00363 * 0.06174 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2064 0.0000 4 6 2.3561 1.8197 1.2199 5 16 2.0811 1.2776 2.8729 6 6 2.8215 2.7311 3.5208 7 6 3.2267 3.5270 2.5375 8 6 2.9890 3.0629 1.2399 9 6 3.3167 3.7085 -0.0529 10 6 3.9494 4.9643 -0.0757 11 1 3.8351 5.6418 0.7577 12 6 4.7268 5.3360 -1.1779 13 7 5.1479 4.4255 -2.0188 14 14 5.1640 7.1318 -1.4495 15 1 4.5701 7.9552 -0.3657 16 1 6.6405 7.2889 -1.4385 17 1 4.6282 7.5788 -2.7603 18 6 2.9891 3.0653 -1.2493 19 6 2.3572 1.8211 -1.2230 20 6 2.0158 1.1521 -2.4819 21 8 1.4660 0.0706 -2.4643 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 2.9329 2.9479 4.5729 26 1 3.7096 4.4740 2.7284 27 1 5.6867 4.6832 -2.7832 28 1 3.2258 3.5306 -2.1948 29 1 2.2541 1.6215 -3.4248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396341993.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:34 Heat of formation + Delta-G solvation = -47.353079 kcal Electronic energy + Delta-G solvation = -17061.018189 eV Core-core repulsion = 14233.396676 eV Total energy + Delta-G solvation = -2827.621513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85906 -39.17200 -38.42397 -36.35054 -34.75786 -31.43103 -30.50198 -28.21413 -26.48571 -25.42112 -23.78352 -22.15472 -21.06031 -19.48490 -18.76806 -17.62572 -16.78461 -16.75552 -16.48627 -16.28540 -15.72331 -15.31313 -14.98660 -14.83773 -14.25578 -14.05482 -13.98600 -13.45774 -13.08227 -12.91954 -12.73151 -12.42931 -12.23164 -11.84136 -11.70204 -11.39229 -11.11160 -10.90777 -10.35652 -10.03101 -9.23138 -8.86006 -8.56465 -6.34855 -0.39255 0.63123 0.87704 1.07951 1.32974 1.43953 1.51382 1.59418 2.02026 2.16679 2.52150 3.14837 3.52020 3.58420 4.21116 4.39018 4.47708 4.52893 4.62834 4.68523 4.72216 4.79711 5.00180 5.13191 5.21443 5.35106 5.53564 5.70242 5.82392 5.91766 6.36761 6.55118 6.63173 6.67975 6.97330 8.09637 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.008586 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.215293 B = 3260.265662 C = 4580.276469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.334 6.334 3 C 0.004 3.996 4 C -0.130 4.130 5 S 0.047 5.953 6 C -0.242 4.242 7 C -0.091 4.091 8 C -0.178 4.178 9 C 0.107 3.893 10 C -0.438 4.438 11 H 0.094 0.906 12 C 0.038 3.962 13 N -0.792 5.792 14 Si 0.990 3.010 15 H -0.255 1.255 16 H -0.266 1.266 17 H -0.259 1.259 18 C -0.145 4.145 19 C -0.163 4.163 20 C 0.386 3.614 21 O -0.486 6.486 22 H 0.101 0.899 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.189 0.811 26 H 0.144 0.856 27 H 0.302 0.698 28 H 0.136 0.864 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 2.926 1.836 4.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.250 6.250 3 C -0.047 4.047 4 C -0.246 4.246 5 S 0.308 5.692 6 C -0.375 4.375 7 C -0.121 4.121 8 C -0.185 4.185 9 C 0.102 3.898 10 C -0.465 4.465 11 H 0.112 0.888 12 C -0.182 4.182 13 N -0.415 5.415 14 Si 0.810 3.190 15 H -0.178 1.178 16 H -0.191 1.191 17 H -0.184 1.184 18 C -0.167 4.167 19 C -0.168 4.168 20 C 0.248 3.752 21 O -0.361 6.361 22 H 0.119 0.881 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.206 0.794 26 H 0.161 0.839 27 H 0.113 0.887 28 H 0.154 0.846 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.006 0.881 2.397 3.944 hybrid contribution 0.841 1.940 -0.743 2.242 sum -2.165 2.822 1.653 3.922 Atomic orbital electron populations 1.22864 0.80502 1.02826 0.98966 1.85911 1.19655 1.25363 1.94101 1.17625 1.07672 0.89728 0.89643 1.22920 1.06370 0.98574 0.96704 1.83499 1.65750 1.23680 0.96235 1.25251 1.10505 0.98322 1.03388 1.19880 1.00698 1.01026 0.90457 1.19518 1.09500 0.94650 0.94858 1.18736 0.89556 0.92593 0.88952 1.19938 1.23072 0.99750 1.03699 0.88789 1.26913 0.93224 1.04436 0.93595 1.69838 1.23119 1.37399 1.11096 0.85009 0.78757 0.75448 0.79834 1.17801 1.19080 1.18371 1.21279 1.02404 0.94172 0.98825 1.20988 1.04164 0.97013 0.94588 1.24293 0.73099 0.84594 0.93252 1.90451 1.32706 1.21821 1.91160 0.88111 0.94730 0.95147 0.79411 0.83881 0.88676 0.84626 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 10.42 113.37 1.18 2.81 15 2 O -0.33 -15.42 8.69 -65.45 -0.57 -15.99 15 3 C 0.00 0.19 5.75 23.25 0.13 0.33 15 4 C -0.13 -6.15 6.41 23.02 0.15 -6.00 15 5 S 0.05 1.83 23.26 -56.49 -1.31 0.51 15 6 C -0.24 -8.59 11.12 66.64 0.74 -7.85 15 7 C -0.09 -3.70 9.73 21.48 0.21 -3.49 15 8 C -0.18 -8.43 6.01 -19.94 -0.12 -8.55 15 9 C 0.11 5.22 5.74 -19.69 -0.11 5.10 15 10 C -0.44 -20.05 8.78 23.26 0.20 -19.85 15 11 H 0.09 4.07 7.49 -2.91 -0.02 4.05 15 12 C 0.04 1.61 5.12 85.24 0.44 2.05 15 13 N -0.79 -34.63 11.00 21.82 0.24 -34.39 15 14 Si 0.99 31.50 29.59 68.60 2.03 33.53 15 15 H -0.25 -7.99 7.11 99.48 0.71 -7.28 15 16 H -0.27 -8.28 7.11 99.48 0.71 -7.57 15 17 H -0.26 -7.91 7.11 99.48 0.71 -7.21 15 18 C -0.14 -6.80 8.37 22.95 0.19 -6.61 15 19 C -0.16 -7.53 5.86 -20.25 -0.12 -7.65 15 20 C 0.39 15.39 11.40 70.00 0.80 16.18 15 21 O -0.49 -21.29 14.62 18.24 0.27 -21.02 15 22 H 0.10 3.21 8.14 -2.39 -0.02 3.19 15 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.03 1.15 7.45 -2.39 -0.02 1.13 15 25 H 0.19 5.09 8.06 -2.91 -0.02 5.07 15 26 H 0.14 5.25 7.68 -2.91 -0.02 5.22 15 27 H 0.30 11.61 8.30 -92.70 -0.77 10.84 15 28 H 0.14 6.16 6.18 -2.91 -0.02 6.14 15 29 H 0.13 4.10 8.06 -2.91 -0.02 4.08 15 Total: -1.00 -57.53 272.72 5.53 -52.00 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 1.19 Total: 18.88 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 3.69 Total: -33.53 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.24 Total: -34.39 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.30 Total: -37.01 kcal Atomic # 14 Polarization: 31.50 SS G_CDS: 2.03 Total: 33.53 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.31 Total: 0.51 kcal Total: -57.53 5.53 -52.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341993.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.645 kcal (2) G-P(sol) polarization free energy of solvation -57.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds