Wall clock time and date at job start Mon Mar 30 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35936 * 116.99624 * 2 1 4 4 C 1.39502 * 119.88940 * 359.97438 * 3 2 1 5 5 C 1.37363 * 120.18673 * 179.97438 * 4 3 2 6 6 C 1.40071 * 120.57174 * 0.02849 * 5 4 3 7 7 S 1.75869 * 129.63393 * 180.34122 * 6 5 4 8 8 C 1.75177 * 92.78301 * 180.02562 * 7 6 5 9 9 C 1.39201 * 124.65151 * 179.91063 * 8 7 6 10 10 H 1.07999 * 120.00559 * 172.61909 * 9 8 7 11 11 C 1.40788 * 119.99860 * 352.62540 * 9 8 7 12 12 N 1.30380 * 119.99889 * 6.45432 * 11 9 8 13 13 Si 1.86800 * 120.00126 * 186.45501 * 11 9 8 14 14 H 1.48501 * 109.47290 * 94.98705 * 13 11 9 15 15 H 1.48503 * 109.47352 * 214.98659 * 13 11 9 16 16 H 1.48498 * 109.47058 * 334.98366 * 13 11 9 17 17 C 1.39116 * 110.70083 * 359.64925 * 8 7 6 18 18 C 1.41249 * 123.29350 * 180.26551 * 17 8 7 19 19 O 1.21486 * 120.00229 * 179.97438 * 18 17 8 20 20 C 1.39946 * 119.62469 * 359.97438 * 6 5 4 21 21 C 1.37468 * 119.88464 * 179.97438 * 3 2 1 22 22 H 1.08997 * 109.47059 * 299.99868 * 1 2 3 23 23 H 1.09001 * 109.47192 * 60.00387 * 1 2 3 24 24 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 25 25 H 1.07996 * 119.90559 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.71732 * 180.02562 * 5 4 3 27 27 H 0.97006 * 119.99766 * 180.02562 * 12 11 9 28 28 H 1.08006 * 120.00431 * 359.97438 * 18 17 8 29 29 H 1.07999 * 119.81619 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2840 2.3797 -0.0005 5 6 1.9012 3.6069 0.0000 6 6 3.2987 3.7015 0.0005 7 16 4.3265 5.1285 0.0093 8 6 5.7960 4.1750 0.0024 9 6 7.0833 4.7048 0.0035 10 1 7.9359 4.0521 0.1192 11 6 7.2738 6.0917 -0.1461 12 7 6.2456 6.8933 -0.1592 13 14 8.9997 6.7834 -0.3258 14 1 9.3219 6.9420 -1.7667 15 1 9.0758 8.1052 0.3468 16 1 9.9734 5.8530 0.2998 17 6 5.5002 2.8157 0.0017 18 6 6.4890 1.8070 0.0021 19 8 6.1630 0.6367 0.0020 20 6 4.0711 2.5344 0.0010 21 6 3.4191 1.2805 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2058 2.3192 -0.0014 26 1 1.3038 4.5066 0.0000 27 1 6.3769 7.8488 -0.2626 28 1 7.5350 2.0761 0.0026 29 1 4.0026 0.3717 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396342644.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:00 Heat of formation + Delta-G solvation = -63.811691 kcal Electronic energy + Delta-G solvation = -16603.063254 eV Core-core repulsion = 13774.728041 eV Total energy + Delta-G solvation = -2828.335212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28239 -37.80024 -36.25865 -35.19617 -32.84421 -29.95314 -29.13268 -26.78657 -26.22283 -23.52186 -21.67152 -21.25122 -18.98614 -17.73716 -16.80805 -16.24717 -15.85438 -15.21140 -15.05547 -14.72216 -14.19653 -13.15758 -13.10036 -13.03886 -12.74381 -12.42623 -12.13432 -12.03471 -11.91077 -11.81003 -11.34420 -11.04515 -10.72777 -10.60631 -10.30475 -10.26512 -9.36068 -9.31030 -8.19856 -8.06656 -7.64536 -7.58413 -6.42076 -5.20839 1.92193 2.28240 2.46299 2.65171 2.73868 2.85124 3.01851 3.32900 3.58282 3.88053 3.96704 4.43211 5.06653 5.33640 5.43595 5.58995 5.62739 5.73466 5.93090 6.22612 6.29905 6.44878 6.49895 6.87978 7.00464 7.06444 7.17748 7.33803 7.34194 7.47769 7.75452 7.91289 7.98270 8.19520 9.17728 9.19991 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.006142 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.776445 B = 4557.314664 C = 5359.890654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.120 3.880 4 C -0.249 4.249 5 C -0.035 4.035 6 C -0.267 4.267 7 S 0.138 5.862 8 C 0.083 3.917 9 C -0.346 4.346 10 H 0.113 0.887 11 C 0.052 3.948 12 N -0.739 5.739 13 Si 0.944 3.056 14 H -0.258 1.258 15 H -0.266 1.266 16 H -0.250 1.250 17 C -0.421 4.421 18 C 0.396 3.604 19 O -0.549 6.549 20 C 0.074 3.926 21 C -0.162 4.162 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.310 0.690 28 H 0.060 0.940 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 2.414 -0.145 3.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.238 6.238 3 C 0.074 3.926 4 C -0.269 4.269 5 C -0.058 4.058 6 C -0.381 4.381 7 S 0.397 5.603 8 C -0.038 4.038 9 C -0.379 4.379 10 H 0.130 0.870 11 C -0.176 4.176 12 N -0.363 5.363 13 Si 0.765 3.235 14 H -0.183 1.183 15 H -0.191 1.191 16 H -0.173 1.173 17 C -0.429 4.429 18 C 0.268 3.732 19 O -0.437 6.437 20 C 0.068 3.932 21 C -0.182 4.182 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.132 0.868 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.564 3.388 -0.144 4.920 hybrid contribution 0.505 -0.739 -0.111 0.902 sum -3.060 2.648 -0.256 4.055 Atomic orbital electron populations 1.22874 0.79848 1.02700 1.00819 1.86039 1.20188 1.27921 1.89682 1.18629 0.92078 0.83227 0.98647 1.20685 0.98387 0.92251 1.15583 1.20038 0.91774 0.96155 0.97795 1.23616 0.97549 1.01160 1.15742 1.84687 0.93574 1.02152 1.79851 1.21725 0.96560 0.94303 0.91214 1.19726 0.93299 0.92447 1.32423 0.86956 1.26657 1.01859 0.96981 0.92094 1.68560 1.33116 1.07505 1.27086 0.85630 0.78478 0.79081 0.80299 1.18262 1.19084 1.17284 1.18969 0.92369 0.93366 1.38148 1.21168 0.92527 0.87271 0.72206 1.90366 1.85917 1.22255 1.45161 1.18611 0.91891 0.90813 0.91909 1.20319 0.90458 0.98307 1.09137 0.93284 0.93281 0.89198 0.86785 0.87275 0.87579 0.92429 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 15 2 O -0.32 -6.30 10.49 -19.54 -0.20 -6.50 15 3 C 0.12 2.61 6.66 -39.39 -0.26 2.35 15 4 C -0.25 -4.90 9.02 -39.43 -0.36 -5.26 15 5 C -0.04 -0.73 10.05 -39.21 -0.39 -1.12 15 6 C -0.27 -6.33 6.44 -38.25 -0.25 -6.58 15 7 S 0.14 3.17 20.05 -107.50 -2.15 1.01 15 8 C 0.08 2.01 6.13 -38.90 -0.24 1.77 15 9 C -0.35 -7.59 8.90 -38.26 -0.34 -7.93 15 10 H 0.11 2.27 6.66 -52.49 -0.35 1.92 15 11 C 0.05 1.02 5.50 -17.20 -0.09 0.93 15 12 N -0.74 -15.06 10.59 55.59 0.59 -14.47 15 13 Si 0.94 14.59 29.57 -169.99 -5.03 9.57 15 14 H -0.26 -3.99 7.11 56.52 0.40 -3.59 15 15 H -0.27 -4.00 7.11 56.52 0.40 -3.60 15 16 H -0.25 -3.83 7.11 56.52 0.40 -3.43 15 17 C -0.42 -10.72 5.90 -105.47 -0.62 -11.34 15 18 C 0.40 9.70 10.97 31.88 0.35 10.05 15 19 O -0.55 -14.70 15.42 5.38 0.08 -14.62 15 20 C 0.07 1.89 6.00 -105.12 -0.63 1.26 15 21 C -0.16 -4.01 9.45 -38.69 -0.37 -4.38 15 22 H 0.05 0.61 7.66 -51.93 -0.40 0.21 15 23 H 0.05 0.61 7.65 -51.93 -0.40 0.21 15 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.11 1.84 6.29 -52.49 -0.33 1.51 15 26 H 0.11 1.95 8.06 -52.49 -0.42 1.53 15 27 H 0.31 5.50 8.29 -40.82 -0.34 5.16 15 28 H 0.06 1.26 6.84 -52.48 -0.36 0.90 15 29 H 0.14 3.51 6.26 -52.49 -0.33 3.18 15 LS Contribution 268.09 15.07 4.04 4.04 Total: -1.00 -28.20 268.09 -7.02 -35.23 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -2.14 Total: 4.54 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.21 Total: -18.79 kcal Atomic # 7 Polarization: -15.06 SS G_CDS: 0.59 Total: -14.47 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.12 Total: -21.12 kcal Atomic # 14 Polarization: 14.59 SS G_CDS: -5.03 Total: 9.57 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.15 Total: 1.01 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.20 -7.02 -35.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396342644.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.584 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds