Wall clock time and date at job start Mon Mar 30 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35473 * 116.99650 * 2 1 4 4 C 1.33540 * 124.64387 * 180.02562 * 3 2 1 5 5 C 1.40269 * 115.78791 * 179.97438 * 4 3 2 6 6 C 1.42069 * 128.15506 * 179.97438 * 5 4 3 7 7 C 1.35038 * 122.01839 * 180.02562 * 6 5 4 8 8 C 1.41287 * 120.61040 * 0.24668 * 7 6 5 9 9 C 1.40057 * 120.61279 * 179.71990 * 8 7 6 10 10 H 1.08000 * 120.00237 * 213.04339 * 9 8 7 11 11 C 1.40345 * 119.99999 * 33.04530 * 9 8 7 12 12 N 1.30614 * 120.00035 * 9.65126 * 11 9 8 13 13 Si 1.86792 * 120.00089 * 189.65391 * 11 9 8 14 14 H 1.48502 * 109.47350 * 89.99772 * 13 11 9 15 15 H 1.48498 * 109.47227 * 209.99880 * 13 11 9 16 16 H 1.48499 * 109.47233 * 329.99919 * 13 11 9 17 17 C 1.46611 * 118.76830 * 359.51364 * 8 7 6 18 18 C 1.46122 * 120.48519 * 180.25751 * 17 8 7 19 19 O 1.21408 * 120.00122 * 356.71999 * 18 17 8 20 20 C 1.40376 * 112.33719 * 359.97438 * 5 4 3 21 21 S 1.75469 * 124.65253 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.47458 * 59.99516 * 1 2 3 23 23 H 1.08999 * 109.47432 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47247 * 299.99772 * 1 2 3 25 25 H 1.07994 * 122.10728 * 359.97438 * 4 3 2 26 26 H 1.07998 * 118.99660 * 0.04403 * 6 5 4 27 27 H 1.07993 * 119.69311 * 179.97438 * 7 6 5 28 28 H 0.97000 * 120.00035 * 179.97438 * 12 11 9 29 29 H 1.08000 * 119.99711 * 176.71614 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 6 3.3675 1.3848 -0.0005 5 6 3.8042 2.7178 -0.0010 6 6 5.1391 3.2040 -0.0010 7 6 5.4199 4.5249 -0.0010 8 6 4.3802 5.4815 0.0043 9 6 4.6714 6.8514 0.0103 10 1 4.0174 7.5404 0.5240 11 6 5.8133 7.3289 -0.6514 12 7 6.4993 6.5330 -1.4271 13 14 6.3519 9.1029 -0.4228 14 1 7.2858 9.1922 0.7283 15 1 7.0362 9.5749 -1.6532 16 1 5.1618 9.9518 -0.1616 17 6 2.9908 5.0135 -0.0011 18 6 1.8863 5.9702 -0.0015 19 8 2.1145 7.1609 0.0628 20 6 2.7364 3.6290 -0.0014 21 16 1.2107 2.7513 -0.0006 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 4.0581 0.5546 -0.0005 26 1 5.9543 2.4957 -0.0014 27 1 6.4488 4.8530 -0.0006 28 1 7.2883 6.8631 -1.8848 29 1 0.8669 5.6180 -0.0590 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396343327.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:36 Heat of formation + Delta-G solvation = -34.387628 kcal Electronic energy + Delta-G solvation = -16616.842790 eV Core-core repulsion = 13789.783500 eV Total energy + Delta-G solvation = -2827.059289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.72868 -38.18662 -36.88333 -34.86729 -32.67213 -30.12575 -28.97658 -27.14560 -24.97944 -23.49118 -22.24265 -20.48889 -19.36711 -18.07885 -17.28306 -15.82372 -15.48587 -15.45429 -15.25599 -14.92824 -13.94811 -13.71416 -13.11080 -13.03826 -12.87954 -12.37240 -12.26154 -12.04465 -11.74334 -11.38786 -11.20113 -11.00524 -10.89624 -10.48825 -10.20284 -9.90205 -9.79387 -9.26562 -8.51688 -8.17874 -7.31992 -7.28588 -6.80209 -4.73414 1.80932 1.98074 2.04661 2.55491 2.80605 2.89778 2.97480 3.27975 3.66699 3.68265 3.87570 4.32952 5.23137 5.25551 5.28771 5.48933 5.52690 5.87805 6.16882 6.30815 6.45157 6.65333 6.68441 6.79530 6.86176 7.10187 7.27224 7.53218 7.61710 7.69196 7.77378 8.19690 8.39099 8.52725 8.88670 9.64375 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.037530 B = 0.005904 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.885328 B = 4741.213641 C = 5397.028010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.292 6.292 3 C -0.044 4.044 4 C -0.117 4.117 5 C -0.179 4.179 6 C -0.060 4.060 7 C -0.131 4.131 8 C 0.153 3.847 9 C -0.375 4.375 10 H 0.118 0.882 11 C 0.063 3.937 12 N -0.757 5.757 13 Si 0.926 3.074 14 H -0.262 1.262 15 H -0.272 1.272 16 H -0.252 1.252 17 C -0.305 4.305 18 C 0.370 3.630 19 O -0.494 6.494 20 C -0.024 4.024 21 S 0.003 5.997 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.129 0.871 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.293 0.707 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -5.532 1.264 6.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C -0.201 4.201 4 C -0.147 4.147 5 C -0.185 4.185 6 C -0.081 4.081 7 C -0.150 4.150 8 C 0.146 3.854 9 C -0.400 4.400 10 H 0.136 0.864 11 C -0.161 4.161 12 N -0.379 5.379 13 Si 0.749 3.251 14 H -0.186 1.186 15 H -0.197 1.197 16 H -0.175 1.175 17 C -0.314 4.314 18 C 0.237 3.763 19 O -0.375 6.375 20 C -0.140 4.140 21 S 0.261 5.739 22 H 0.071 0.929 23 H 0.116 0.884 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.117 0.883 27 H 0.142 0.858 28 H 0.104 0.896 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.895 -4.826 1.123 6.965 hybrid contribution 1.439 -0.007 -0.145 1.446 sum -3.456 -4.833 0.978 6.021 Atomic orbital electron populations 1.23039 0.79033 1.03447 1.01493 1.85784 1.20186 1.23719 1.91017 1.22404 0.94554 0.87000 1.16110 1.19227 0.92084 0.96791 1.06597 1.17330 0.93635 0.90070 1.17469 1.20279 0.92991 0.95572 0.99258 1.20956 0.99645 0.91704 1.02712 1.18545 0.88558 0.93082 0.85197 1.20480 1.03730 0.94181 1.21622 0.86417 1.26468 0.94518 1.01936 0.93176 1.69699 1.13113 1.38052 1.17053 0.85964 0.79980 0.80114 0.79058 1.18642 1.19704 1.17483 1.20534 0.94898 0.89287 1.26730 1.22835 0.91728 0.88376 0.73377 1.90398 1.87662 1.19366 1.40094 1.22304 0.92656 0.96548 1.02492 1.83680 1.10046 0.97706 1.82490 0.92876 0.88416 0.92881 0.85344 0.88304 0.85767 0.89552 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.24 101.05 1.03 1.36 15 2 O -0.29 -4.93 10.55 -18.11 -0.19 -5.12 15 3 C -0.04 -0.84 7.16 29.09 0.21 -0.63 15 4 C -0.12 -2.36 10.15 -40.46 -0.41 -2.77 15 5 C -0.18 -3.99 5.87 -106.86 -0.63 -4.62 15 6 C -0.06 -1.33 9.91 -39.25 -0.39 -1.72 15 7 C -0.13 -3.11 8.52 -39.56 -0.34 -3.45 15 8 C 0.15 3.90 5.65 -104.68 -0.59 3.31 15 9 C -0.37 -9.46 7.91 -38.11 -0.30 -9.76 15 10 H 0.12 3.07 5.78 -52.49 -0.30 2.76 15 11 C 0.06 1.45 5.25 -17.28 -0.09 1.35 15 12 N -0.76 -17.53 11.08 55.57 0.62 -16.92 15 13 Si 0.93 17.44 29.57 -169.99 -5.03 12.41 15 14 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 15 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 16 H -0.25 -4.90 7.11 56.52 0.40 -4.50 15 17 C -0.31 -7.46 6.08 -102.41 -0.62 -8.08 15 18 C 0.37 8.58 11.27 33.89 0.38 8.96 15 19 O -0.49 -12.61 14.50 5.45 0.08 -12.54 15 20 C -0.02 -0.56 6.36 -37.83 -0.24 -0.80 15 21 S 0.00 0.05 21.41 -107.50 -2.30 -2.25 15 22 H 0.05 0.63 8.02 -51.93 -0.42 0.21 15 23 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.05 0.62 8.03 -51.93 -0.42 0.21 15 25 H 0.13 2.32 8.06 -52.49 -0.42 1.90 15 26 H 0.10 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.12 2.91 6.52 -52.49 -0.34 2.57 15 28 H 0.29 6.04 8.29 -40.82 -0.34 5.70 15 29 H 0.06 1.11 7.71 -52.49 -0.40 0.71 15 LS Contribution 271.42 15.07 4.09 4.09 Total: -1.00 -27.56 271.42 -7.01 -34.57 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.29 Total: 2.59 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -1.99 Total: -16.83 kcal Atomic # 7 Polarization: -17.53 SS G_CDS: 0.62 Total: -16.92 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.11 Total: -17.66 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.30 Total: -2.25 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.56 -7.01 -34.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343327.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.180 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds