Wall clock time and date at job start Mon Mar 30 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35473 * 116.99650 * 2 1 4 4 C 1.33540 * 124.64387 * 180.02562 * 3 2 1 5 5 C 1.40269 * 115.78791 * 179.97438 * 4 3 2 6 6 C 1.42069 * 128.15506 * 179.97438 * 5 4 3 7 7 C 1.35038 * 122.01839 * 180.02562 * 6 5 4 8 8 C 1.41287 * 120.61040 * 0.24668 * 7 6 5 9 9 C 1.40057 * 120.61279 * 179.71990 * 8 7 6 10 10 H 1.08000 * 120.00237 * 213.04339 * 9 8 7 11 11 C 1.40345 * 119.99999 * 33.04530 * 9 8 7 12 12 N 1.30614 * 120.00035 * 9.65126 * 11 9 8 13 13 Si 1.86792 * 120.00089 * 189.65391 * 11 9 8 14 14 H 1.48502 * 109.47350 * 89.99772 * 13 11 9 15 15 H 1.48498 * 109.47227 * 209.99880 * 13 11 9 16 16 H 1.48499 * 109.47233 * 329.99919 * 13 11 9 17 17 C 1.46611 * 118.76830 * 359.51364 * 8 7 6 18 18 C 1.46122 * 120.48519 * 180.25751 * 17 8 7 19 19 O 1.21408 * 120.00122 * 356.71999 * 18 17 8 20 20 C 1.40376 * 112.33719 * 359.97438 * 5 4 3 21 21 S 1.75469 * 124.65253 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.47458 * 59.99516 * 1 2 3 23 23 H 1.08999 * 109.47432 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47247 * 299.99772 * 1 2 3 25 25 H 1.07994 * 122.10728 * 359.97438 * 4 3 2 26 26 H 1.07998 * 118.99660 * 0.04403 * 6 5 4 27 27 H 1.07993 * 119.69311 * 179.97438 * 7 6 5 28 28 H 0.97000 * 120.00035 * 179.97438 * 12 11 9 29 29 H 1.08000 * 119.99711 * 176.71614 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 6 3.3675 1.3848 -0.0005 5 6 3.8042 2.7178 -0.0010 6 6 5.1391 3.2040 -0.0010 7 6 5.4199 4.5249 -0.0010 8 6 4.3802 5.4815 0.0043 9 6 4.6714 6.8514 0.0103 10 1 4.0174 7.5404 0.5240 11 6 5.8133 7.3289 -0.6514 12 7 6.4993 6.5330 -1.4271 13 14 6.3519 9.1029 -0.4228 14 1 7.2858 9.1922 0.7283 15 1 7.0362 9.5749 -1.6532 16 1 5.1618 9.9518 -0.1616 17 6 2.9908 5.0135 -0.0011 18 6 1.8863 5.9702 -0.0015 19 8 2.1145 7.1609 0.0628 20 6 2.7364 3.6290 -0.0014 21 16 1.2107 2.7513 -0.0006 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 4.0581 0.5546 -0.0005 26 1 5.9543 2.4957 -0.0014 27 1 6.4488 4.8530 -0.0006 28 1 7.2883 6.8631 -1.8848 29 1 0.8669 5.6180 -0.0590 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396343327.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:35 Heat of formation + Delta-G solvation = -49.552876 kcal Electronic energy + Delta-G solvation = -16617.500404 eV Core-core repulsion = 13789.783500 eV Total energy + Delta-G solvation = -2827.716904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32652 -39.74134 -38.63712 -36.57628 -34.34594 -31.89776 -30.62671 -28.41696 -26.55031 -25.23785 -23.93991 -22.13806 -21.04577 -19.78780 -18.81062 -17.51081 -17.06450 -16.89618 -16.72614 -16.47275 -15.61005 -15.30674 -14.92492 -14.70551 -14.53295 -14.01883 -13.85709 -13.49794 -13.06473 -12.91745 -12.84135 -12.53380 -12.43610 -12.08480 -11.86973 -11.51172 -11.42832 -10.90816 -10.21618 -9.96993 -9.01235 -8.96176 -8.46011 -6.55282 0.09197 0.25393 0.48402 0.93089 1.25840 1.34752 1.49080 1.64711 2.09304 2.12861 2.39193 2.58603 3.46442 3.75528 4.21751 4.31903 4.33373 4.56959 4.60542 4.70590 4.81285 4.93613 5.02027 5.02838 5.18199 5.35445 5.61455 5.83860 5.87637 6.00120 6.17675 6.39980 6.56139 6.72884 7.08662 7.97233 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.037530 B = 0.005904 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.885328 B = 4741.213641 C = 5397.028010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.297 6.297 3 C -0.024 4.024 4 C -0.144 4.144 5 C -0.182 4.182 6 C -0.059 4.059 7 C -0.147 4.147 8 C 0.125 3.875 9 C -0.408 4.408 10 H 0.099 0.901 11 C 0.031 3.969 12 N -0.780 5.780 13 Si 0.991 3.009 14 H -0.248 1.248 15 H -0.256 1.256 16 H -0.267 1.267 17 C -0.333 4.333 18 C 0.368 3.632 19 O -0.526 6.526 20 C -0.057 4.057 21 S 0.057 5.943 22 H 0.059 0.941 23 H 0.135 0.865 24 H 0.060 0.940 25 H 0.148 0.852 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.305 0.695 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 -7.118 1.155 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.213 6.213 3 C -0.182 4.182 4 C -0.174 4.174 5 C -0.189 4.189 6 C -0.079 4.079 7 C -0.167 4.167 8 C 0.119 3.881 9 C -0.434 4.434 10 H 0.117 0.883 11 C -0.190 4.190 12 N -0.403 5.403 13 Si 0.810 3.190 14 H -0.172 1.172 15 H -0.180 1.180 16 H -0.191 1.191 17 C -0.342 4.342 18 C 0.237 3.763 19 O -0.409 6.409 20 C -0.173 4.173 21 S 0.316 5.684 22 H 0.078 0.922 23 H 0.153 0.847 24 H 0.079 0.921 25 H 0.166 0.834 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.729 -6.450 1.011 8.686 hybrid contribution 1.499 0.184 -0.112 1.514 sum -4.230 -6.265 0.899 7.613 Atomic orbital electron populations 1.23467 0.76290 1.06305 1.02139 1.85808 1.22860 1.22252 1.90351 1.22664 0.94706 0.87994 1.12870 1.19322 0.93164 0.96330 1.08539 1.17674 0.93675 0.91221 1.16309 1.20590 0.94161 0.95448 0.97726 1.20947 0.99149 0.92366 1.04228 1.18930 0.89759 0.93741 0.85681 1.20491 1.05219 0.94174 1.23515 0.88279 1.27175 0.93870 1.05676 0.92318 1.69689 1.13643 1.39713 1.17244 0.85044 0.79107 0.74899 0.79932 1.17194 1.18020 1.19086 1.20777 0.95026 0.90592 1.27840 1.23238 0.92914 0.87739 0.72391 1.90381 1.88229 1.20545 1.41753 1.22560 0.95314 0.96355 1.03073 1.83382 1.07142 0.96481 1.81435 0.92214 0.84692 0.92117 0.83448 0.85574 0.86234 0.88373 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 10.24 113.37 1.16 1.43 15 2 O -0.30 -8.94 10.55 -87.72 -0.93 -9.87 15 3 C -0.02 -0.86 7.16 66.75 0.48 -0.38 15 4 C -0.14 -5.50 10.15 21.70 0.22 -5.28 15 5 C -0.18 -7.98 5.87 -21.31 -0.13 -8.10 15 6 C -0.06 -2.59 9.91 22.48 0.22 -2.37 15 7 C -0.15 -7.21 8.52 22.28 0.19 -7.02 15 8 C 0.13 6.64 5.65 -19.90 -0.11 6.52 15 9 C -0.41 -21.60 7.91 23.22 0.18 -21.41 15 10 H 0.10 5.48 5.78 -2.91 -0.02 5.46 15 11 C 0.03 1.46 5.25 85.39 0.45 1.91 15 12 N -0.78 -36.84 11.08 21.89 0.24 -36.59 15 13 Si 0.99 36.29 29.57 68.60 2.03 38.32 15 14 H -0.25 -8.46 7.11 99.48 0.71 -7.75 15 15 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 16 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 17 C -0.33 -16.65 6.08 -18.43 -0.11 -16.76 15 18 C 0.37 17.36 11.27 69.87 0.79 18.15 15 19 O -0.53 -27.78 14.50 -3.43 -0.05 -27.83 15 20 C -0.06 -2.58 6.36 23.41 0.15 -2.43 15 21 S 0.06 2.03 21.41 -56.49 -1.21 0.82 15 22 H 0.06 1.16 8.02 -2.39 -0.02 1.15 15 23 H 0.14 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.06 1.17 8.03 -2.38 -0.02 1.15 15 25 H 0.15 4.96 8.06 -2.91 -0.02 4.94 15 26 H 0.13 4.70 8.06 -2.91 -0.02 4.68 15 27 H 0.12 5.81 6.52 -2.91 -0.02 5.79 15 28 H 0.30 12.60 8.29 -92.71 -0.77 11.83 15 29 H 0.09 3.55 7.71 -2.91 -0.02 3.53 15 Total: -1.00 -60.67 271.42 4.77 -55.91 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.19 Total: 14.99 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 3.49 Total: -35.75 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.24 Total: -36.59 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.98 Total: -37.70 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.21 Total: 0.82 kcal Total: -60.67 4.77 -55.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343327.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.356 kcal (2) G-P(sol) polarization free energy of solvation -60.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds