Wall clock time and date at job start Mon Mar 30 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35646 * 116.99913 * 2 1 4 4 C 1.39843 * 120.06503 * 269.97667 * 3 2 1 5 5 S 1.75817 * 130.12753 * 0.02716 * 4 3 2 6 6 C 1.69996 * 93.10820 * 179.97438 * 5 4 3 7 7 C 1.35843 * 111.99456 * 359.97438 * 6 5 4 8 8 C 1.41770 * 123.17308 * 180.02562 * 7 6 5 9 9 O 1.21407 * 120.00139 * 180.02562 * 8 7 6 10 10 C 1.39489 * 119.77304 * 180.02562 * 4 3 2 11 11 C 1.41542 * 119.61528 * 0.02772 * 10 4 3 12 12 C 1.35402 * 120.94753 * 359.65956 * 11 10 4 13 13 C 1.40889 * 120.06787 * 90.00110 * 3 2 1 14 14 C 1.40916 * 120.22109 * 359.97438 * 13 3 2 15 15 H 1.07998 * 119.99914 * 334.52090 * 14 13 3 16 16 C 1.39846 * 119.99775 * 154.52563 * 14 13 3 17 17 N 1.30937 * 120.00131 * 334.35611 * 16 14 13 18 18 Si 1.86801 * 119.99893 * 154.35780 * 16 14 13 19 19 H 1.48502 * 109.46914 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47160 * 299.99677 * 18 16 14 21 21 H 1.48497 * 109.47307 * 59.99830 * 18 16 14 22 22 H 1.09004 * 109.46943 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47147 * 299.99950 * 1 2 3 24 24 H 1.08997 * 109.47051 * 60.00475 * 1 2 3 25 25 H 1.07997 * 124.00320 * 180.02562 * 6 5 4 26 26 H 1.08003 * 119.99845 * 0.02562 * 8 7 6 27 27 H 1.07997 * 119.52530 * 180.02562 * 11 10 4 28 28 H 1.07995 * 119.87850 * 180.32589 * 12 11 10 29 29 H 0.96997 * 120.00417 * 354.27925 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.3633 1.8326 -1.2103 5 16 2.0929 1.3018 -2.8644 6 6 2.8037 2.6969 -3.5263 7 6 3.2386 3.5517 -2.5643 8 6 3.8681 4.7888 -2.8527 9 8 4.2350 5.5090 -1.9468 10 6 2.9970 3.0752 -1.2032 11 6 3.3123 3.6926 0.0309 12 6 3.0014 3.0974 1.2067 13 6 2.3653 1.8376 1.2193 14 6 2.0478 1.2155 2.4432 15 1 1.2346 0.5066 2.4936 16 6 2.7856 1.5162 3.5925 17 7 4.0198 1.9404 3.4858 18 14 2.0105 1.3127 5.2799 19 1 2.9937 1.6939 6.3254 20 1 0.8136 2.1858 5.3833 21 1 1.6081 -0.1037 5.4722 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 2.8977 2.8821 -4.5862 26 1 4.0213 5.0906 -3.8783 27 1 3.8026 4.6548 0.0347 28 1 3.2452 3.5864 2.1382 29 1 4.4501 1.9672 2.6169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396343741.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:56 Heat of formation + Delta-G solvation = -43.139856 kcal Electronic energy + Delta-G solvation = -16987.806757 eV Core-core repulsion = 14160.367943 eV Total energy + Delta-G solvation = -2827.438814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31180 -38.29188 -36.40243 -35.14086 -32.93211 -29.27886 -29.06598 -26.39683 -25.22359 -24.73069 -21.76028 -21.21618 -19.15064 -18.43565 -16.98555 -16.22332 -15.82877 -15.04796 -14.61462 -14.25889 -14.21759 -13.91214 -13.91034 -13.37431 -12.98554 -12.46721 -12.18325 -12.08681 -11.54241 -11.37825 -11.05967 -10.99715 -10.56104 -10.26701 -10.00469 -9.85422 -9.27211 -9.25159 -8.90694 -8.55278 -7.75052 -7.58382 -6.92662 -4.64745 1.03023 2.22294 2.25926 2.42959 2.70667 3.01930 3.05626 3.23178 3.55322 3.81765 4.29280 4.68387 4.84790 5.24680 5.28305 5.90852 5.92751 5.99482 6.02043 6.18252 6.19587 6.35763 6.51181 6.60443 6.84335 7.15323 7.31759 7.44403 7.54495 7.76801 7.82428 7.90793 8.19843 8.45663 8.79918 9.71334 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.007616 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.300737 B = 3675.636919 C = 4727.564340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C -0.032 4.032 4 C -0.098 4.098 5 S 0.124 5.876 6 C -0.235 4.235 7 C -0.163 4.163 8 C 0.395 3.605 9 O -0.468 6.468 10 C -0.167 4.167 11 C -0.050 4.050 12 C -0.179 4.179 13 C 0.091 3.909 14 C -0.466 4.466 15 H 0.087 0.913 16 C 0.033 3.967 17 N -0.770 5.770 18 Si 1.068 2.932 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.272 1.272 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.028 0.972 25 H 0.159 0.841 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -0.316 -6.763 7.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C -0.084 4.084 4 C -0.213 4.213 5 S 0.391 5.609 6 C -0.371 4.371 7 C -0.179 4.179 8 C 0.253 3.747 9 O -0.344 6.344 10 C -0.171 4.171 11 C -0.070 4.070 12 C -0.198 4.198 13 C 0.085 3.915 14 C -0.493 4.493 15 H 0.105 0.895 16 C -0.191 4.191 17 N -0.391 5.391 18 Si 0.890 3.110 19 H -0.194 1.194 20 H -0.196 1.196 21 H -0.197 1.197 22 H 0.093 0.907 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.177 0.823 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.874 -1.129 -5.400 6.741 hybrid contribution 0.148 1.158 -1.412 1.832 sum -3.726 0.029 -6.812 7.764 Atomic orbital electron populations 1.22884 0.83396 1.00989 0.99546 1.86044 1.17235 1.25829 1.94000 1.17751 1.11810 0.89843 0.88995 1.22725 1.05303 0.97816 0.95486 1.82516 1.61146 1.19611 0.97580 1.25063 1.08476 1.00932 1.02639 1.19840 1.06299 0.98812 0.92915 1.22220 0.74590 0.84071 0.93783 1.90491 1.40121 1.52921 1.50870 1.18222 1.11423 0.95741 0.91763 1.20503 0.97359 0.98791 0.90372 1.20880 1.05663 0.96016 0.97198 1.17777 0.90954 0.90771 0.92007 1.20618 1.14740 1.20828 0.93086 0.89467 1.27298 0.94318 0.91504 1.06007 1.70505 1.10600 1.26026 1.32014 0.83581 0.76435 0.78154 0.72827 1.19442 1.19643 1.19666 0.90662 0.94160 0.95314 0.82329 0.89628 0.86522 0.86414 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.93 101.05 1.10 1.62 15 2 O -0.31 -7.30 9.67 -18.64 -0.18 -7.48 15 3 C -0.03 -0.79 5.78 -37.98 -0.22 -1.01 15 4 C -0.10 -2.25 6.38 -38.52 -0.25 -2.50 15 5 S 0.12 2.26 22.94 -107.50 -2.47 -0.21 15 6 C -0.23 -3.84 10.66 29.87 0.32 -3.52 15 7 C -0.16 -3.09 5.83 -106.20 -0.62 -3.71 15 8 C 0.39 6.61 11.29 32.08 0.36 6.98 15 9 O -0.47 -9.48 15.50 5.45 0.08 -9.39 15 10 C -0.17 -3.83 6.03 -104.97 -0.63 -4.47 15 11 C -0.05 -1.19 9.46 -39.33 -0.37 -1.56 15 12 C -0.18 -4.42 7.85 -39.49 -0.31 -4.73 15 13 C 0.09 2.34 5.29 -106.78 -0.57 1.77 15 14 C -0.47 -11.64 8.61 -37.97 -0.33 -11.97 15 15 H 0.09 2.13 7.03 -52.49 -0.37 1.76 15 16 C 0.03 0.79 4.92 -17.33 -0.09 0.70 15 17 N -0.77 -19.26 12.33 55.54 0.68 -18.57 15 18 Si 1.07 20.01 30.00 -169.99 -5.10 14.91 15 19 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 21 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 22 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.04 0.76 7.67 -51.93 -0.40 0.36 15 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 15 25 H 0.16 1.91 8.06 -52.49 -0.42 1.49 15 26 H 0.09 1.01 8.06 -52.48 -0.42 0.59 15 27 H 0.12 2.70 6.33 -52.49 -0.33 2.37 15 28 H 0.12 2.92 6.50 -52.49 -0.34 2.58 15 29 H 0.30 7.87 6.71 -40.82 -0.27 7.60 15 LS Contribution 271.45 15.07 4.09 4.09 Total: -1.00 -28.35 271.45 -6.68 -35.03 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.20 Total: 4.02 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.59 Total: -22.39 kcal Atomic # 7 Polarization: -19.26 SS G_CDS: 0.68 Total: -18.57 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.10 Total: -16.87 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.10 Total: 14.91 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.47 Total: -0.21 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.35 -6.68 -35.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343741.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.112 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds