Wall clock time and date at job start Mon Mar 30 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35646 * 116.99913 * 2 1 4 4 C 1.39843 * 120.06503 * 269.97667 * 3 2 1 5 5 S 1.75817 * 130.12753 * 0.02716 * 4 3 2 6 6 C 1.69996 * 93.10820 * 179.97438 * 5 4 3 7 7 C 1.35843 * 111.99456 * 359.97438 * 6 5 4 8 8 C 1.41770 * 123.17308 * 180.02562 * 7 6 5 9 9 O 1.21407 * 120.00139 * 180.02562 * 8 7 6 10 10 C 1.39489 * 119.77304 * 180.02562 * 4 3 2 11 11 C 1.41542 * 119.61528 * 0.02772 * 10 4 3 12 12 C 1.35402 * 120.94753 * 359.65956 * 11 10 4 13 13 C 1.40889 * 120.06787 * 90.00110 * 3 2 1 14 14 C 1.40916 * 120.22109 * 359.97438 * 13 3 2 15 15 H 1.07998 * 119.99914 * 334.52090 * 14 13 3 16 16 C 1.39846 * 119.99775 * 154.52563 * 14 13 3 17 17 N 1.30937 * 120.00131 * 334.35611 * 16 14 13 18 18 Si 1.86801 * 119.99893 * 154.35780 * 16 14 13 19 19 H 1.48502 * 109.46914 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47160 * 299.99677 * 18 16 14 21 21 H 1.48497 * 109.47307 * 59.99830 * 18 16 14 22 22 H 1.09004 * 109.46943 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47147 * 299.99950 * 1 2 3 24 24 H 1.08997 * 109.47051 * 60.00475 * 1 2 3 25 25 H 1.07997 * 124.00320 * 180.02562 * 6 5 4 26 26 H 1.08003 * 119.99845 * 0.02562 * 8 7 6 27 27 H 1.07997 * 119.52530 * 180.02562 * 11 10 4 28 28 H 1.07995 * 119.87850 * 180.32589 * 12 11 10 29 29 H 0.96997 * 120.00417 * 354.27925 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.3633 1.8326 -1.2103 5 16 2.0929 1.3018 -2.8644 6 6 2.8037 2.6969 -3.5263 7 6 3.2386 3.5517 -2.5643 8 6 3.8681 4.7888 -2.8527 9 8 4.2350 5.5090 -1.9468 10 6 2.9970 3.0752 -1.2032 11 6 3.3123 3.6926 0.0309 12 6 3.0014 3.0974 1.2067 13 6 2.3653 1.8376 1.2193 14 6 2.0478 1.2155 2.4432 15 1 1.2346 0.5066 2.4936 16 6 2.7856 1.5162 3.5925 17 7 4.0198 1.9404 3.4858 18 14 2.0105 1.3127 5.2799 19 1 2.9937 1.6939 6.3254 20 1 0.8136 2.1858 5.3833 21 1 1.6081 -0.1037 5.4722 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 2.8977 2.8821 -4.5862 26 1 4.0213 5.0906 -3.8783 27 1 3.8026 4.6548 0.0347 28 1 3.2452 3.5864 2.1382 29 1 4.4501 1.9672 2.6169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396343741.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:56 Heat of formation + Delta-G solvation = -60.062768 kcal Electronic energy + Delta-G solvation = -16988.540590 eV Core-core repulsion = 14160.367943 eV Total energy + Delta-G solvation = -2828.172647 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91029 -39.86232 -38.08830 -36.82790 -34.60916 -31.06208 -30.78481 -28.00884 -26.84900 -26.24820 -23.46012 -22.98250 -20.65101 -20.20968 -18.58055 -17.75894 -17.46642 -16.69626 -16.28218 -15.80939 -15.75623 -15.48647 -15.36458 -15.08094 -14.66371 -14.19049 -13.81871 -13.59827 -13.19819 -12.97888 -12.69674 -12.52904 -12.03447 -11.91132 -11.67925 -11.52865 -10.99611 -10.74850 -10.53794 -10.22637 -9.51773 -9.39504 -8.57305 -6.50424 -0.36675 0.46509 0.63534 0.71517 1.15008 1.48155 1.54644 1.77776 2.07744 2.26870 2.58340 2.99873 3.41260 3.66566 3.92867 4.28847 4.40491 4.49014 4.56914 4.62557 4.69980 4.72719 4.83129 4.87088 5.09863 5.39467 5.48126 5.63027 5.69535 5.93726 5.98982 6.36998 6.64970 6.66913 7.02473 7.85392 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.007616 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.300737 B = 3675.636919 C = 4727.564340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.334 6.334 3 C -0.042 4.042 4 C -0.140 4.140 5 S 0.177 5.823 6 C -0.179 4.179 7 C -0.203 4.203 8 C 0.400 3.600 9 O -0.515 6.515 10 C -0.175 4.175 11 C -0.064 4.064 12 C -0.192 4.192 13 C 0.063 3.937 14 C -0.506 4.506 15 H 0.082 0.918 16 C 0.003 3.997 17 N -0.799 5.799 18 Si 1.118 2.882 19 H -0.269 1.269 20 H -0.260 1.260 21 H -0.255 1.255 22 H 0.109 0.891 23 H 0.030 0.970 24 H 0.039 0.961 25 H 0.222 0.778 26 H 0.158 0.842 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 -0.645 -10.257 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.251 6.251 3 C -0.093 4.093 4 C -0.255 4.255 5 S 0.444 5.556 6 C -0.315 4.315 7 C -0.218 4.218 8 C 0.262 3.738 9 O -0.394 6.394 10 C -0.180 4.180 11 C -0.084 4.084 12 C -0.211 4.211 13 C 0.058 3.942 14 C -0.533 4.533 15 H 0.100 0.900 16 C -0.215 4.215 17 N -0.421 5.421 18 Si 0.934 3.066 19 H -0.194 1.194 20 H -0.184 1.184 21 H -0.179 1.179 22 H 0.128 0.872 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.239 0.761 26 H 0.174 0.826 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.846 -1.473 -8.911 10.250 hybrid contribution 0.381 1.216 -0.813 1.512 sum -4.465 -0.256 -9.724 10.703 Atomic orbital electron populations 1.23066 0.80918 1.03277 0.99582 1.85941 1.19553 1.25453 1.94130 1.17950 1.11802 0.89911 0.89614 1.23058 1.05846 0.98394 0.98168 1.82394 1.60247 1.19647 0.93294 1.25864 1.02453 0.98067 1.05120 1.20122 1.09209 1.01280 0.91224 1.23040 0.72486 0.82312 0.95943 1.90499 1.42093 1.53928 1.52831 1.18774 1.10019 0.95806 0.93447 1.20603 0.97792 0.98916 0.91069 1.20808 1.06827 0.96329 0.97145 1.18080 0.91775 0.91219 0.93172 1.20654 1.16010 1.22680 0.93995 0.89973 1.28646 0.93773 0.89919 1.09170 1.70620 1.11579 1.29339 1.30560 0.83004 0.75885 0.79164 0.68584 1.19371 1.18445 1.17869 0.87236 0.95165 0.94207 0.76130 0.82579 0.86729 0.87901 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 10.93 113.37 1.24 2.21 15 2 O -0.33 -15.62 9.67 -89.60 -0.87 -16.49 15 3 C -0.04 -2.11 5.78 23.31 0.13 -1.98 15 4 C -0.14 -6.33 6.38 22.96 0.15 -6.18 15 5 S 0.18 5.72 22.94 -56.49 -1.30 4.42 15 6 C -0.18 -4.72 10.66 67.26 0.72 -4.00 15 7 C -0.20 -6.98 5.83 -20.89 -0.12 -7.10 15 8 C 0.40 11.87 11.29 68.69 0.78 12.64 15 9 O -0.51 -20.25 15.50 -3.42 -0.05 -20.31 15 10 C -0.18 -7.99 6.03 -20.09 -0.12 -8.11 15 11 C -0.06 -3.18 9.46 22.43 0.21 -2.97 15 12 C -0.19 -10.22 7.85 22.33 0.18 -10.04 15 13 C 0.06 3.44 5.29 -21.26 -0.11 3.33 15 14 C -0.51 -26.89 8.61 23.32 0.20 -26.69 15 15 H 0.08 4.26 7.03 -2.91 -0.02 4.24 15 16 C 0.00 0.14 4.92 85.22 0.42 0.56 15 17 N -0.80 -42.84 12.33 21.81 0.27 -42.57 15 18 Si 1.12 41.83 30.00 68.60 2.06 43.88 15 19 H -0.27 -9.92 7.11 99.48 0.71 -9.21 15 20 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 21 H -0.25 -8.72 7.11 99.48 0.71 -8.02 15 22 H 0.11 3.20 8.14 -2.38 -0.02 3.18 15 23 H 0.03 1.15 7.67 -2.39 -0.02 1.13 15 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 25 H 0.22 3.17 8.06 -2.91 -0.02 3.15 15 26 H 0.16 2.54 8.06 -2.91 -0.02 2.51 15 27 H 0.11 5.63 6.33 -2.91 -0.02 5.61 15 28 H 0.10 5.62 6.50 -2.91 -0.02 5.60 15 29 H 0.28 16.09 6.71 -92.71 -0.62 15.47 15 Total: -1.00 -67.96 271.45 5.11 -62.85 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 1.34 Total: 16.55 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 3.67 Total: -48.33 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.27 Total: -42.57 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.92 Total: -36.80 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.06 Total: 43.88 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.30 Total: 4.42 kcal Total: -67.96 5.11 -62.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343741.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.787 kcal (2) G-P(sol) polarization free energy of solvation -67.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds