Wall clock time and date at job start Mon Mar 30 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35723 * 117.00354 * 2 1 4 4 C 1.37395 * 120.09315 * 0.30517 * 3 2 1 5 5 C 1.40216 * 120.66837 * 180.30322 * 4 3 2 6 6 S 1.75886 * 130.01703 * 179.69600 * 5 4 3 7 7 C 1.69948 * 93.21044 * 179.97438 * 6 5 4 8 8 C 1.35308 * 112.21886 * 359.97438 * 7 6 5 9 9 C 1.41535 * 123.18442 * 180.02562 * 8 7 6 10 10 O 1.21429 * 120.00002 * 179.97438 * 9 8 7 11 11 C 1.39972 * 120.07325 * 359.66652 * 5 4 3 12 12 C 1.39806 * 119.59592 * 0.02562 * 11 5 4 13 13 C 1.40062 * 120.17824 * 0.02562 * 12 11 5 14 14 C 1.41063 * 120.16502 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99457 * 209.79904 * 14 13 12 16 16 C 1.39899 * 120.00155 * 29.80143 * 14 13 12 17 17 N 1.30899 * 119.99813 * 197.77558 * 16 14 13 18 18 Si 1.86794 * 119.99988 * 17.77541 * 16 14 13 19 19 H 1.48503 * 109.46976 * 269.99756 * 18 16 14 20 20 H 1.48493 * 109.47457 * 29.99854 * 18 16 14 21 21 H 1.48503 * 109.47184 * 150.00283 * 18 16 14 22 22 H 1.09007 * 109.46842 * 59.99414 * 1 2 3 23 23 H 1.08996 * 109.47933 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47225 * 300.00282 * 1 2 3 25 25 H 1.08000 * 119.66221 * 359.94591 * 4 3 2 26 26 H 1.07996 * 123.89196 * 179.97438 * 7 6 5 27 27 H 1.08001 * 120.00076 * 359.97438 * 9 8 7 28 28 H 1.08001 * 119.91272 * 180.02562 * 12 11 5 29 29 H 0.97006 * 120.00140 * 355.44623 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2989 2.3628 0.0063 5 6 1.9229 3.6184 0.0000 6 16 1.2200 5.2307 -0.0014 7 6 2.7373 5.9961 -0.0095 8 6 3.7583 5.1081 -0.0107 9 6 5.1202 5.4935 -0.0166 10 8 5.9907 4.6470 -0.0169 11 6 3.3198 3.7075 -0.0058 12 6 4.0862 2.5382 -0.0058 13 6 3.4595 1.2856 -0.0006 14 6 4.2330 0.1060 -0.0001 15 1 3.8488 -0.7918 -0.4614 16 6 5.4977 0.0990 0.5980 17 7 6.3523 -0.8500 0.3107 18 14 5.9668 1.4440 1.8064 19 1 6.5939 2.5723 1.0723 20 1 4.7499 1.9255 2.5081 21 1 6.9296 0.9035 2.7994 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.2206 2.3017 0.0104 26 1 2.8713 7.0677 -0.0133 27 1 5.3851 6.5405 -0.0208 28 1 5.1643 2.6009 -0.0099 29 1 6.0865 -1.5841 -0.2650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396343944.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:56 Heat of formation + Delta-G solvation = -35.767936 kcal Electronic energy + Delta-G solvation = -17118.523780 eV Core-core repulsion = 14291.404636 eV Total energy + Delta-G solvation = -2827.119144 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43494 -38.54759 -36.67895 -34.61709 -33.08381 -30.40686 -28.52658 -26.73974 -25.61763 -24.38672 -21.74240 -21.25227 -18.96356 -18.01943 -17.73757 -16.44101 -16.08490 -15.02326 -14.89266 -14.58235 -14.14934 -13.94094 -13.82516 -13.23165 -12.83072 -12.60692 -12.36101 -12.15024 -11.64733 -11.31357 -11.12173 -10.94799 -10.65175 -10.32096 -9.74994 -9.66246 -9.52731 -9.09989 -8.98811 -8.57521 -7.56625 -7.19952 -6.98093 -4.52312 0.96183 2.12857 2.24261 2.46622 2.59963 3.38144 3.43865 3.60512 3.66638 4.11719 4.13010 4.42951 4.83366 5.12322 5.23344 5.50564 5.57804 5.64293 5.82918 5.90100 6.04988 6.14859 6.28290 6.65584 6.79545 6.98523 7.23887 7.42017 7.53558 7.71409 7.97655 8.04197 8.36743 8.43249 8.70551 9.97921 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.011474 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.499147 B = 2439.641017 C = 3999.573627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.304 6.304 3 C 0.073 3.927 4 C -0.154 4.154 5 C -0.235 4.235 6 S 0.125 5.875 7 C -0.180 4.180 8 C -0.200 4.200 9 C 0.383 3.617 10 O -0.452 6.452 11 C -0.011 4.011 12 C -0.219 4.219 13 C 0.089 3.911 14 C -0.484 4.484 15 H 0.085 0.915 16 C 0.046 3.954 17 N -0.805 5.805 18 Si 1.052 2.948 19 H -0.244 1.244 20 H -0.267 1.267 21 H -0.292 1.292 22 H 0.044 0.956 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.108 0.892 26 H 0.164 0.836 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 9.762 0.349 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.027 3.973 4 C -0.177 4.177 5 C -0.349 4.349 6 S 0.392 5.608 7 C -0.317 4.317 8 C -0.218 4.218 9 C 0.241 3.759 10 O -0.327 6.327 11 C -0.016 4.016 12 C -0.241 4.241 13 C 0.085 3.915 14 C -0.511 4.511 15 H 0.103 0.897 16 C -0.175 4.175 17 N -0.426 5.426 18 Si 0.877 3.123 19 H -0.168 1.168 20 H -0.192 1.192 21 H -0.219 1.219 22 H 0.063 0.937 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.126 0.874 26 H 0.181 0.819 27 H 0.103 0.897 28 H 0.154 0.846 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.230 10.126 1.229 13.106 hybrid contribution -0.374 -0.898 -1.089 1.460 sum -8.605 9.228 0.140 12.618 Atomic orbital electron populations 1.22869 0.80894 1.02535 1.00376 1.86074 1.18982 1.27427 1.89273 1.19110 0.92380 0.82631 1.03213 1.19866 0.97569 0.90075 1.10154 1.21635 0.95559 0.95235 1.22498 1.82141 1.06033 0.97448 1.75199 1.25165 0.98295 1.03313 1.04925 1.19982 0.96614 0.93315 1.11873 1.22130 0.87135 0.94128 0.72502 1.90626 1.51853 1.55636 1.34590 1.18506 0.91290 0.91382 1.00392 1.20811 0.99500 0.88949 1.14833 1.17136 0.88006 0.93833 0.92570 1.20569 1.01320 0.97641 1.31600 0.89687 1.27347 0.91306 1.01356 0.97458 1.70569 1.34585 1.09371 1.28107 0.83886 0.77615 0.74946 0.75892 1.16848 1.19179 1.21919 0.93716 0.89354 0.93595 0.87391 0.81888 0.89652 0.84624 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 15 2 O -0.30 -6.70 9.83 -18.88 -0.19 -6.88 15 3 C 0.07 1.75 6.70 -38.59 -0.26 1.49 15 4 C -0.15 -3.25 9.05 -39.15 -0.35 -3.60 15 5 C -0.23 -4.93 6.47 -38.19 -0.25 -5.18 15 6 S 0.13 1.97 22.96 -107.50 -2.47 -0.50 15 7 C -0.18 -2.68 10.61 29.69 0.32 -2.36 15 8 C -0.20 -3.74 5.82 -106.24 -0.62 -4.36 15 9 C 0.38 6.65 11.28 31.99 0.36 7.01 15 10 O -0.45 -9.91 14.43 5.43 0.08 -9.83 15 11 C -0.01 -0.25 6.01 -105.21 -0.63 -0.89 15 12 C -0.22 -5.62 6.77 -38.31 -0.26 -5.88 15 13 C 0.09 2.35 5.11 -106.85 -0.55 1.80 15 14 C -0.48 -13.40 9.04 -37.89 -0.34 -13.74 15 15 H 0.09 2.43 7.89 -52.48 -0.41 2.02 15 16 C 0.05 1.26 5.40 -17.33 -0.09 1.16 15 17 N -0.80 -22.19 13.66 55.55 0.76 -21.43 15 18 Si 1.05 25.87 24.94 -169.99 -4.24 21.63 15 19 H -0.24 -6.00 5.31 56.52 0.30 -5.70 15 20 H -0.27 -6.58 7.05 56.52 0.40 -6.19 15 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 22 H 0.04 0.64 7.66 -51.93 -0.40 0.24 15 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.05 0.66 7.64 -51.93 -0.40 0.26 15 25 H 0.11 1.94 6.23 -52.49 -0.33 1.61 15 26 H 0.16 1.69 8.06 -52.49 -0.42 1.26 15 27 H 0.09 1.02 8.06 -52.49 -0.42 0.60 15 28 H 0.14 3.61 2.91 -52.49 -0.15 3.46 15 29 H 0.29 7.63 8.73 -40.82 -0.36 7.28 15 LS Contribution 262.68 15.07 3.96 3.96 Total: -1.00 -31.11 262.68 -6.00 -37.11 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -2.21 Total: -0.96 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -1.69 Total: -23.10 kcal Atomic # 7 Polarization: -22.19 SS G_CDS: 0.76 Total: -21.43 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.11 Total: -16.72 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -4.24 Total: 21.63 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.47 Total: -0.50 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.11 -6.00 -37.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343944.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.341 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds