Wall clock time and date at job start Mon Mar 30 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35723 * 117.00354 * 2 1 4 4 C 1.37395 * 120.09315 * 0.30517 * 3 2 1 5 5 C 1.40216 * 120.66837 * 180.30322 * 4 3 2 6 6 S 1.75886 * 130.01703 * 179.69600 * 5 4 3 7 7 C 1.69948 * 93.21044 * 179.97438 * 6 5 4 8 8 C 1.35308 * 112.21886 * 359.97438 * 7 6 5 9 9 C 1.41535 * 123.18442 * 180.02562 * 8 7 6 10 10 O 1.21429 * 120.00002 * 179.97438 * 9 8 7 11 11 C 1.39972 * 120.07325 * 359.66652 * 5 4 3 12 12 C 1.39806 * 119.59592 * 0.02562 * 11 5 4 13 13 C 1.40062 * 120.17824 * 0.02562 * 12 11 5 14 14 C 1.41063 * 120.16502 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99457 * 209.79904 * 14 13 12 16 16 C 1.39899 * 120.00155 * 29.80143 * 14 13 12 17 17 N 1.30899 * 119.99813 * 197.77558 * 16 14 13 18 18 Si 1.86794 * 119.99988 * 17.77541 * 16 14 13 19 19 H 1.48503 * 109.46976 * 269.99756 * 18 16 14 20 20 H 1.48493 * 109.47457 * 29.99854 * 18 16 14 21 21 H 1.48503 * 109.47184 * 150.00283 * 18 16 14 22 22 H 1.09007 * 109.46842 * 59.99414 * 1 2 3 23 23 H 1.08996 * 109.47933 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47225 * 300.00282 * 1 2 3 25 25 H 1.08000 * 119.66221 * 359.94591 * 4 3 2 26 26 H 1.07996 * 123.89196 * 179.97438 * 7 6 5 27 27 H 1.08001 * 120.00076 * 359.97438 * 9 8 7 28 28 H 1.08001 * 119.91272 * 180.02562 * 12 11 5 29 29 H 0.97006 * 120.00140 * 355.44623 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2989 2.3628 0.0063 5 6 1.9229 3.6184 0.0000 6 16 1.2200 5.2307 -0.0014 7 6 2.7373 5.9961 -0.0095 8 6 3.7583 5.1081 -0.0107 9 6 5.1202 5.4935 -0.0166 10 8 5.9907 4.6470 -0.0169 11 6 3.3198 3.7075 -0.0058 12 6 4.0862 2.5382 -0.0058 13 6 3.4595 1.2856 -0.0006 14 6 4.2330 0.1060 -0.0001 15 1 3.8488 -0.7918 -0.4614 16 6 5.4977 0.0990 0.5980 17 7 6.3523 -0.8500 0.3107 18 14 5.9668 1.4440 1.8064 19 1 6.5939 2.5723 1.0723 20 1 4.7499 1.9255 2.5081 21 1 6.9296 0.9035 2.7994 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.2206 2.3017 0.0104 26 1 2.8713 7.0677 -0.0133 27 1 5.3851 6.5405 -0.0208 28 1 5.1643 2.6009 -0.0099 29 1 6.0865 -1.5841 -0.2650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396343944.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:56 Heat of formation + Delta-G solvation = -57.584024 kcal Electronic energy + Delta-G solvation = -17119.469796 eV Core-core repulsion = 14291.404636 eV Total energy + Delta-G solvation = -2828.065160 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04108 -40.03001 -38.27494 -36.38286 -34.80628 -32.20623 -30.14341 -28.15067 -27.25423 -25.94681 -23.42271 -22.94557 -20.60869 -19.83667 -19.32146 -17.89332 -17.52749 -16.55994 -16.49280 -16.08317 -15.98449 -15.52241 -15.33664 -14.99935 -14.54691 -14.18585 -13.91011 -13.73467 -13.26461 -12.89616 -12.73553 -12.47406 -12.34397 -12.11049 -11.57484 -11.42443 -11.24953 -10.83337 -10.50301 -10.27089 -9.49038 -9.03678 -8.48484 -6.54793 -0.36944 0.44710 0.73331 0.78234 1.11699 1.37467 1.48569 1.66557 2.13667 2.16495 2.56614 2.62819 3.29153 3.64500 3.93248 4.06939 4.29688 4.38911 4.52741 4.56501 4.65055 4.68158 4.77982 5.04265 5.09347 5.20872 5.36878 5.51502 5.63883 5.88946 6.12876 6.37351 6.57948 6.79310 6.88904 7.94235 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.011474 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.499147 B = 2439.641017 C = 3999.573627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.055 3.945 4 C -0.148 4.148 5 C -0.250 4.250 6 S 0.221 5.779 7 C -0.134 4.134 8 C -0.248 4.248 9 C 0.387 3.613 10 O -0.514 6.514 11 C -0.041 4.041 12 C -0.231 4.231 13 C 0.060 3.940 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.017 3.983 17 N -0.840 5.840 18 Si 1.090 2.910 19 H -0.247 1.247 20 H -0.274 1.274 21 H -0.280 1.280 22 H 0.060 0.940 23 H 0.114 0.886 24 H 0.062 0.938 25 H 0.146 0.854 26 H 0.227 0.773 27 H 0.157 0.843 28 H 0.118 0.882 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 14.823 0.676 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.008 3.992 4 C -0.170 4.170 5 C -0.364 4.364 6 S 0.488 5.512 7 C -0.272 4.272 8 C -0.265 4.265 9 C 0.249 3.751 10 O -0.392 6.392 11 C -0.046 4.046 12 C -0.253 4.253 13 C 0.057 3.943 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.197 4.197 17 N -0.464 5.464 18 Si 0.913 3.087 19 H -0.172 1.172 20 H -0.199 1.199 21 H -0.207 1.207 22 H 0.079 0.921 23 H 0.132 0.868 24 H 0.080 0.920 25 H 0.163 0.837 26 H 0.243 0.757 27 H 0.173 0.827 28 H 0.136 0.864 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.453 15.197 1.552 19.093 hybrid contribution 0.148 -2.048 -1.262 2.410 sum -11.305 13.149 0.290 17.343 Atomic orbital electron populations 1.23259 0.77580 1.04915 1.01796 1.86032 1.22480 1.27179 1.89332 1.19196 0.91886 0.84314 1.03797 1.20249 0.99261 0.89375 1.08155 1.22401 0.95968 0.98823 1.19247 1.81978 1.04584 0.91710 1.72948 1.25950 0.96840 1.05934 0.98461 1.20132 0.98786 0.91596 1.15988 1.23054 0.85917 0.96323 0.69811 1.90633 1.53123 1.57729 1.37764 1.19027 0.92349 0.93010 1.00216 1.20873 0.99235 0.90202 1.15009 1.17375 0.89883 0.93655 0.93430 1.20371 1.02627 0.97570 1.34845 0.92808 1.28055 0.91409 1.02250 0.97985 1.70610 1.34914 1.10484 1.30423 0.83371 0.77093 0.73449 0.74827 1.17186 1.19883 1.20745 0.92093 0.86813 0.91986 0.83682 0.75657 0.82717 0.86428 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.67 15 2 O -0.34 -15.19 9.83 -90.46 -0.89 -16.08 15 3 C 0.06 2.67 6.70 22.91 0.15 2.83 15 4 C -0.15 -5.94 9.05 22.55 0.20 -5.74 15 5 C -0.25 -9.68 6.47 23.17 0.15 -9.53 15 6 S 0.22 5.43 22.96 -56.49 -1.30 4.13 15 7 C -0.13 -2.99 10.61 67.14 0.71 -2.28 15 8 C -0.25 -8.27 5.82 -20.91 -0.12 -8.40 15 9 C 0.39 12.13 11.28 68.63 0.77 12.91 15 10 O -0.51 -22.44 14.43 -3.49 -0.05 -22.49 15 11 C -0.04 -1.81 6.01 -20.25 -0.12 -1.93 15 12 C -0.23 -12.30 6.77 23.09 0.16 -12.15 15 13 C 0.06 3.36 5.11 -21.31 -0.11 3.25 15 14 C -0.52 -31.76 9.04 23.37 0.21 -31.55 15 15 H 0.05 3.44 7.89 -2.91 -0.02 3.41 15 16 C 0.02 1.02 5.40 85.23 0.46 1.48 15 17 N -0.84 -50.31 13.66 21.82 0.30 -50.01 15 18 Si 1.09 56.21 24.94 68.60 1.71 57.92 15 19 H -0.25 -12.77 5.31 99.48 0.53 -12.24 15 20 H -0.27 -14.04 7.05 99.48 0.70 -13.34 15 21 H -0.28 -13.60 7.11 99.48 0.71 -12.89 15 22 H 0.06 1.59 7.66 -2.38 -0.02 1.57 15 23 H 0.11 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.06 1.62 7.64 -2.39 -0.02 1.60 15 25 H 0.15 4.60 6.23 -2.91 -0.02 4.59 15 26 H 0.23 2.27 8.06 -2.91 -0.02 2.24 15 27 H 0.16 2.68 8.06 -2.91 -0.02 2.66 15 28 H 0.12 6.63 2.91 -2.91 -0.01 6.62 15 29 H 0.28 16.42 8.73 -92.70 -0.81 15.61 15 Total: -1.00 -77.76 262.68 4.33 -73.43 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 0.98 Total: 2.52 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 3.58 Total: -49.42 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.30 Total: -50.01 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.94 Total: -38.57 kcal Atomic # 14 Polarization: 56.21 SS G_CDS: 1.71 Total: 57.92 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.30 Total: 4.13 kcal Total: -77.76 4.33 -73.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343944.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.847 kcal (2) G-P(sol) polarization free energy of solvation -77.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds