Wall clock time and date at job start Mon Mar 30 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.34997 * 116.99684 * 2 1 4 4 S 1.69979 * 124.04354 * 0.58571 * 3 2 1 5 5 C 1.75806 * 93.22438 * 179.97438 * 4 3 2 6 6 C 1.38946 * 130.00485 * 179.42068 * 5 4 3 7 7 C 1.40371 * 120.05859 * 179.97438 * 6 5 4 8 8 C 1.41043 * 120.17218 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00265 * 204.76751 * 8 7 6 10 10 C 1.39863 * 119.99844 * 24.76151 * 8 7 6 11 11 N 1.30900 * 119.99543 * 18.01306 * 10 8 7 12 12 Si 1.86793 * 120.00106 * 198.00577 * 10 8 7 13 13 H 1.48499 * 109.47223 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47097 * 120.00321 * 12 10 8 15 15 H 1.48498 * 109.47393 * 240.00374 * 12 10 8 16 16 C 1.41137 * 119.66135 * 359.97245 * 7 6 5 17 17 C 1.35526 * 120.13843 * 0.02562 * 16 7 6 18 18 C 1.39898 * 110.22880 * 359.62920 * 5 4 3 19 19 C 1.37136 * 124.03710 * 180.02562 * 3 2 1 20 20 C 1.41052 * 123.28366 * 359.96519 * 19 3 2 21 21 O 1.21486 * 119.99895 * 180.02562 * 20 19 3 22 22 H 1.08995 * 109.47868 * 59.99433 * 1 2 3 23 23 H 1.09003 * 109.47027 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47113 * 299.99332 * 1 2 3 25 25 H 1.08000 * 119.97016 * 359.96911 * 6 5 4 26 26 H 0.97001 * 119.99461 * 179.97438 * 11 10 8 27 27 H 1.08000 * 119.93214 * 179.97438 * 16 7 6 28 28 H 1.07991 * 119.61191 * 180.02562 * 17 16 7 29 29 H 1.07993 * 120.00168 * 0.03719 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0417 1.2029 0.0000 4 16 1.2188 2.6901 0.0144 5 6 2.7067 3.6265 0.0060 6 6 2.8957 5.0030 0.0003 7 6 4.1950 5.5343 -0.0055 8 6 4.3896 6.9312 -0.0119 9 1 5.3043 7.3473 -0.4079 10 6 3.3981 7.7777 0.4946 11 7 2.4675 7.2986 1.2807 12 14 3.4021 9.5919 0.0496 13 1 4.5506 9.8791 -0.8469 14 1 2.1349 9.9340 -0.6450 15 1 3.5237 10.4047 1.2864 16 6 5.3056 4.6634 -0.0048 17 6 5.1179 3.3213 0.0008 18 6 3.8153 2.7732 0.0007 19 6 3.4028 1.3710 -0.0005 20 6 4.3155 0.2956 -0.0004 21 8 5.5107 0.5133 -0.0004 22 1 -0.3635 0.5139 -0.8898 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 2.0422 5.6648 0.0001 26 1 1.7801 7.8858 1.6322 27 1 6.3072 5.0675 -0.0097 28 1 5.9739 2.6628 0.0017 29 1 3.9519 -0.7213 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396343978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:17 Heat of formation + Delta-G solvation = -51.876475 kcal Electronic energy + Delta-G solvation = -16604.729304 eV Core-core repulsion = 13776.911642 eV Total energy + Delta-G solvation = -2827.817662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89993 -39.81466 -39.09381 -36.26780 -34.50006 -31.35962 -30.92302 -28.38218 -26.85215 -26.23471 -23.18709 -23.00368 -20.77934 -19.59714 -19.16230 -18.06989 -17.23123 -17.05778 -16.70347 -16.23935 -15.77273 -15.17012 -15.15014 -14.94399 -14.35843 -14.18206 -13.96364 -13.44876 -13.12935 -12.94729 -12.79426 -12.62658 -12.49287 -12.22488 -11.75422 -11.40926 -11.31197 -10.86874 -10.50559 -10.16408 -9.12490 -8.71675 -8.58035 -6.34517 -0.33862 0.28035 0.63627 0.84627 0.97155 1.39642 1.44490 1.55405 2.04541 2.13488 2.19743 2.68696 3.56227 3.70730 4.19941 4.21956 4.28843 4.41741 4.56575 4.68935 4.77868 4.83529 4.98740 5.17744 5.28056 5.40399 5.66267 5.80363 5.86987 5.95008 6.15066 6.49556 6.71227 6.81065 6.85034 8.24574 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.027767 B = 0.006242 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.141247 B = 4484.568844 C = 5406.149359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.274 6.274 3 C 0.061 3.939 4 S 0.148 5.852 5 C -0.140 4.140 6 C -0.166 4.166 7 C 0.087 3.913 8 C -0.480 4.480 9 H 0.085 0.915 10 C 0.036 3.964 11 N -0.815 5.815 12 Si 0.986 3.014 13 H -0.257 1.257 14 H -0.263 1.263 15 H -0.265 1.265 16 C -0.199 4.199 17 C -0.070 4.070 18 C -0.153 4.153 19 C -0.262 4.262 20 C 0.406 3.594 21 O -0.519 6.519 22 H 0.071 0.929 23 H 0.148 0.852 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.292 0.708 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 -8.150 -1.839 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.187 6.187 3 C -0.104 4.104 4 S 0.409 5.591 5 C -0.254 4.254 6 C -0.191 4.191 7 C 0.082 3.918 8 C -0.509 4.509 9 H 0.103 0.897 10 C -0.181 4.181 11 N -0.440 5.440 12 Si 0.806 3.194 13 H -0.180 1.180 14 H -0.187 1.187 15 H -0.190 1.190 16 C -0.219 4.219 17 C -0.090 4.090 18 C -0.158 4.158 19 C -0.277 4.277 20 C 0.270 3.730 21 O -0.399 6.399 22 H 0.089 0.911 23 H 0.166 0.834 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.456 -7.888 -1.673 12.427 hybrid contribution 1.233 0.643 0.049 1.391 sum -8.223 -7.245 -1.624 11.079 Atomic orbital electron populations 1.23776 0.74860 1.07591 1.03125 1.85768 1.24037 1.21644 1.87238 1.23277 0.95343 0.90991 1.00803 1.82334 1.06428 0.92331 1.78018 1.22342 0.95494 0.98055 1.09529 1.20501 0.97834 0.90178 1.10568 1.17773 0.90962 0.94020 0.89045 1.19854 1.03891 0.91175 1.35945 0.89664 1.26820 0.93297 1.06265 0.91686 1.69897 1.12214 1.40239 1.21665 0.85093 0.79722 0.75295 0.79273 1.18004 1.18711 1.18973 1.21012 0.98418 0.93079 1.09357 1.20491 0.95036 0.94706 0.98746 1.18415 0.93396 0.90002 1.14011 1.19487 0.92221 0.95538 1.20407 1.22235 0.86993 0.94125 0.69661 1.90467 1.20546 1.89385 1.39547 0.91088 0.83407 0.91282 0.86960 0.89686 0.86879 0.86638 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.19 113.37 1.16 1.17 15 2 O -0.27 -6.94 10.13 -82.69 -0.84 -7.78 15 3 C 0.06 2.05 7.00 67.56 0.47 2.52 15 4 S 0.15 5.19 21.41 -56.49 -1.21 3.98 15 5 C -0.14 -6.69 6.41 22.84 0.15 -6.54 15 6 C -0.17 -8.72 8.72 22.96 0.20 -8.52 15 7 C 0.09 4.72 5.56 -21.36 -0.12 4.60 15 8 C -0.48 -25.13 9.03 23.35 0.21 -24.92 15 9 H 0.09 4.27 7.91 -2.91 -0.02 4.24 15 10 C 0.04 1.73 5.12 85.23 0.44 2.17 15 11 N -0.82 -41.03 10.97 21.81 0.24 -40.79 15 12 Si 0.99 36.48 29.60 68.60 2.03 38.51 15 13 H -0.26 -9.32 7.11 99.48 0.71 -8.62 15 14 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 15 H -0.27 -9.40 7.11 99.48 0.71 -8.70 15 16 C -0.20 -10.19 9.70 22.35 0.22 -9.98 15 17 C -0.07 -3.48 9.46 22.40 0.21 -3.27 15 18 C -0.15 -7.37 6.03 -20.06 -0.12 -7.49 15 19 C -0.26 -10.55 5.84 -20.79 -0.12 -10.67 15 20 C 0.41 14.81 11.12 68.51 0.76 15.57 15 21 O -0.52 -22.48 15.50 -3.67 -0.06 -22.54 15 22 H 0.07 1.04 7.98 -2.39 -0.02 1.02 15 23 H 0.15 1.21 8.14 -2.39 -0.02 1.19 15 24 H 0.07 1.04 7.96 -2.38 -0.02 1.02 15 25 H 0.11 6.05 6.15 -2.91 -0.02 6.03 15 26 H 0.29 13.12 8.30 -92.71 -0.77 12.35 15 27 H 0.11 5.34 8.06 -2.91 -0.02 5.32 15 28 H 0.12 5.60 6.33 -2.92 -0.02 5.59 15 29 H 0.13 3.49 7.89 -2.91 -0.02 3.47 15 Total: -1.00 -64.47 271.82 4.81 -59.67 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.19 Total: 14.32 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 3.45 Total: -45.37 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.24 Total: -40.79 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.89 Total: -30.32 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.21 Total: 3.98 kcal Total: -64.47 4.81 -59.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds