Wall clock time and date at job start Mon Mar 30 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 117.00338 * 2 1 4 4 C 1.37998 * 119.81689 * 359.97438 * 3 2 1 5 5 C 1.38612 * 120.07914 * 180.02562 * 4 3 2 6 6 C 1.37373 * 120.33155 * 0.03073 * 5 4 3 7 7 C 1.40913 * 120.58315 * 359.92956 * 6 5 4 8 8 C 1.46478 * 128.56611 * 180.02562 * 7 6 5 9 9 C 1.39484 * 123.36869 * 0.03880 * 8 7 6 10 10 H 1.08003 * 120.00239 * 218.28579 * 9 8 7 11 11 C 1.40697 * 120.00107 * 38.28266 * 9 8 7 12 12 N 1.30440 * 119.99787 * 22.72195 * 11 9 8 13 13 Si 1.86800 * 120.00026 * 202.44438 * 11 9 8 14 14 H 1.48500 * 109.47107 * 89.99869 * 13 11 9 15 15 H 1.48501 * 109.47043 * 209.99885 * 13 11 9 16 16 H 1.48496 * 109.47038 * 329.99797 * 13 11 9 17 17 C 1.38950 * 113.26182 * 180.30801 * 8 7 6 18 18 C 1.41063 * 124.65659 * 179.69999 * 17 8 7 19 19 O 1.21509 * 119.99623 * 5.29035 * 18 17 8 20 20 S 1.75172 * 110.68676 * 359.59001 * 17 8 7 21 21 C 1.39295 * 119.09356 * 0.07085 * 7 6 5 22 22 H 1.09004 * 109.46916 * 59.99864 * 1 2 3 23 23 H 1.08993 * 109.47596 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46963 * 300.00702 * 1 2 3 25 25 H 1.08002 * 119.95656 * 0.03777 * 4 3 2 26 26 H 1.07993 * 119.83176 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.70858 * 180.02562 * 6 5 4 28 28 H 0.96993 * 120.00289 * 5.29085 * 12 11 9 29 29 H 1.07995 * 119.99910 * 185.29229 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2909 2.3658 -0.0005 5 6 1.9146 3.6037 -0.0011 6 6 3.2856 3.6897 -0.0017 7 6 4.0771 2.5239 -0.0003 8 6 5.5376 2.4117 -0.0002 9 6 6.3917 3.5144 -0.0007 10 1 7.3029 3.4915 -0.5802 11 6 6.0664 4.6567 0.7535 12 7 5.2533 4.5580 1.7688 13 14 6.8048 6.3131 0.3059 14 1 5.9174 7.0050 -0.6631 15 1 6.9415 7.1414 1.5308 16 1 8.1425 6.1096 -0.3059 17 6 5.9870 1.0969 -0.0055 18 6 7.3444 0.7131 -0.0127 19 8 8.2144 1.5560 0.0825 20 16 4.6364 -0.0187 0.0010 21 6 3.4505 1.2798 0.0002 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2126 2.3051 -0.0003 26 1 1.3197 4.5050 -0.0019 27 1 3.7610 4.6594 -0.0017 28 1 4.9335 3.6869 2.0511 29 1 7.6102 -0.3297 -0.1027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396344441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:36 Heat of formation + Delta-G solvation = -46.351017 kcal Electronic energy + Delta-G solvation = -17065.357409 eV Core-core repulsion = 14237.779349 eV Total energy + Delta-G solvation = -2827.578061 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66538 -37.97189 -36.88704 -34.75486 -32.61116 -29.84399 -28.81457 -27.05985 -26.60123 -23.33766 -22.40402 -20.77915 -19.34793 -18.05432 -16.97670 -16.06225 -15.57314 -15.49187 -15.34244 -14.33279 -14.14436 -13.89943 -13.57919 -13.12015 -12.79988 -12.40225 -12.33136 -12.05803 -11.74340 -11.46340 -11.08211 -10.93974 -10.64085 -10.56233 -10.18116 -10.00421 -9.64487 -9.20430 -8.35284 -8.15086 -7.86133 -7.53538 -6.71016 -4.79010 1.36119 1.90771 2.67828 2.70413 2.99843 3.16027 3.22600 3.52646 3.56802 3.76712 4.15264 4.24774 4.86130 5.12209 5.24748 5.26482 5.42807 5.52559 5.65325 5.86247 6.00405 6.13806 6.40159 6.62514 6.80903 7.00320 7.06911 7.24350 7.37194 7.66478 7.68584 7.75419 8.21334 8.35980 9.18776 9.54264 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.009079 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.711538 B = 3083.180574 C = 4303.360925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.316 6.316 3 C 0.134 3.866 4 C -0.203 4.203 5 C -0.108 4.108 6 C -0.097 4.097 7 C -0.041 4.041 8 C 0.115 3.885 9 C -0.395 4.395 10 H 0.109 0.891 11 C 0.025 3.975 12 N -0.744 5.744 13 Si 1.072 2.928 14 H -0.268 1.268 15 H -0.270 1.270 16 H -0.267 1.267 17 C -0.458 4.458 18 C 0.388 3.612 19 O -0.523 6.523 20 S 0.020 5.980 21 C -0.127 4.127 22 H 0.051 0.949 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.304 0.696 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 -0.712 -2.112 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.084 3.916 4 C -0.224 4.224 5 C -0.130 4.130 6 C -0.116 4.116 7 C -0.050 4.050 8 C 0.106 3.894 9 C -0.424 4.424 10 H 0.127 0.873 11 C -0.201 4.201 12 N -0.365 5.365 13 Si 0.893 3.107 14 H -0.193 1.193 15 H -0.194 1.194 16 H -0.191 1.191 17 C -0.574 4.574 18 C 0.260 3.740 19 O -0.410 6.410 20 S 0.279 5.721 21 C -0.242 4.242 22 H 0.070 0.930 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.118 0.882 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.569 -0.525 -1.606 8.734 hybrid contribution -0.544 -0.327 -0.362 0.731 sum -9.113 -0.853 -1.969 9.362 Atomic orbital electron populations 1.22960 0.79204 1.03292 1.01021 1.86067 1.20606 1.27214 1.89120 1.18252 0.89433 0.84219 0.99647 1.20837 0.98934 0.92107 1.10554 1.20565 0.94306 0.96445 1.01670 1.21195 0.92800 0.97972 0.99669 1.19600 0.94061 0.91351 1.00019 1.17684 0.88223 0.92675 0.90807 1.20850 1.06385 0.95796 1.19334 0.87318 1.27674 0.93762 1.05627 0.93085 1.70291 1.17088 1.32173 1.16985 0.83521 0.77453 0.72089 0.77617 1.19339 1.19427 1.19126 1.22654 0.97322 0.94639 1.42780 1.20438 0.86519 0.91973 0.75078 1.90448 1.51177 1.55476 1.43918 1.82944 0.95565 1.08244 1.85330 1.21881 0.93492 0.98577 1.10266 0.93002 0.88715 0.92972 0.85848 0.86190 0.85169 0.88241 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.80 101.05 0.99 1.35 15 2 O -0.32 -5.60 10.45 -19.42 -0.20 -5.80 15 3 C 0.13 2.66 6.73 -38.77 -0.26 2.40 15 4 C -0.20 -3.52 9.02 -39.53 -0.36 -3.87 15 5 C -0.11 -1.96 10.01 -39.76 -0.40 -2.36 15 6 C -0.10 -2.07 8.35 -38.88 -0.32 -2.40 15 7 C -0.04 -0.98 5.05 -105.17 -0.53 -1.51 15 8 C 0.12 3.02 5.01 -105.85 -0.53 2.49 15 9 C -0.40 -10.26 7.76 -38.19 -0.30 -10.56 15 10 H 0.11 2.96 6.76 -52.48 -0.35 2.60 15 11 C 0.03 0.59 3.90 -17.21 -0.07 0.53 15 12 N -0.74 -18.04 11.66 55.59 0.65 -17.39 15 13 Si 1.07 20.06 30.00 -169.99 -5.10 14.96 15 14 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 15 H -0.27 -4.95 7.11 56.52 0.40 -4.54 15 16 H -0.27 -4.96 7.11 56.52 0.40 -4.55 15 17 C -0.46 -11.75 6.24 -38.25 -0.24 -11.98 15 18 C 0.39 9.74 11.41 31.80 0.36 10.10 15 19 O -0.52 -14.58 15.29 5.36 0.08 -14.49 15 20 S 0.02 0.46 23.06 -107.50 -2.48 -2.02 15 21 C -0.13 -2.90 6.38 -38.29 -0.24 -3.14 15 22 H 0.05 0.55 7.65 -51.93 -0.40 0.15 15 23 H 0.09 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.05 0.56 7.65 -51.93 -0.40 0.16 15 25 H 0.12 1.68 6.24 -52.49 -0.33 1.35 15 26 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 27 H 0.13 2.82 6.02 -52.49 -0.32 2.51 15 28 H 0.30 7.80 6.90 -40.82 -0.28 7.52 15 29 H 0.05 1.01 8.06 -52.49 -0.42 0.59 15 LS Contribution 266.90 15.07 4.02 4.02 Total: -1.00 -29.28 266.90 -7.06 -36.34 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.14 Total: 3.33 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.89 Total: -18.94 kcal Atomic # 7 Polarization: -18.04 SS G_CDS: 0.65 Total: -17.39 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.12 Total: -20.29 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.10 Total: 14.96 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.48 Total: -2.02 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.28 -7.06 -36.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.011 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds