Wall clock time and date at job start Mon Mar 30 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 117.00338 * 2 1 4 4 C 1.37998 * 119.81689 * 359.97438 * 3 2 1 5 5 C 1.38612 * 120.07914 * 180.02562 * 4 3 2 6 6 C 1.37373 * 120.33155 * 0.03073 * 5 4 3 7 7 C 1.40913 * 120.58315 * 359.92956 * 6 5 4 8 8 C 1.46478 * 128.56611 * 180.02562 * 7 6 5 9 9 C 1.39484 * 123.36869 * 0.03880 * 8 7 6 10 10 H 1.08003 * 120.00239 * 218.28579 * 9 8 7 11 11 C 1.40697 * 120.00107 * 38.28266 * 9 8 7 12 12 N 1.30440 * 119.99787 * 22.72195 * 11 9 8 13 13 Si 1.86800 * 120.00026 * 202.44438 * 11 9 8 14 14 H 1.48500 * 109.47107 * 89.99869 * 13 11 9 15 15 H 1.48501 * 109.47043 * 209.99885 * 13 11 9 16 16 H 1.48496 * 109.47038 * 329.99797 * 13 11 9 17 17 C 1.38950 * 113.26182 * 180.30801 * 8 7 6 18 18 C 1.41063 * 124.65659 * 179.69999 * 17 8 7 19 19 O 1.21509 * 119.99623 * 5.29035 * 18 17 8 20 20 S 1.75172 * 110.68676 * 359.59001 * 17 8 7 21 21 C 1.39295 * 119.09356 * 0.07085 * 7 6 5 22 22 H 1.09004 * 109.46916 * 59.99864 * 1 2 3 23 23 H 1.08993 * 109.47596 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46963 * 300.00702 * 1 2 3 25 25 H 1.08002 * 119.95656 * 0.03777 * 4 3 2 26 26 H 1.07993 * 119.83176 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.70858 * 180.02562 * 6 5 4 28 28 H 0.96993 * 120.00289 * 5.29085 * 12 11 9 29 29 H 1.07995 * 119.99910 * 185.29229 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2909 2.3658 -0.0005 5 6 1.9146 3.6037 -0.0011 6 6 3.2856 3.6897 -0.0017 7 6 4.0771 2.5239 -0.0003 8 6 5.5376 2.4117 -0.0002 9 6 6.3917 3.5144 -0.0007 10 1 7.3029 3.4915 -0.5802 11 6 6.0664 4.6567 0.7535 12 7 5.2533 4.5580 1.7688 13 14 6.8048 6.3131 0.3059 14 1 5.9174 7.0050 -0.6631 15 1 6.9415 7.1414 1.5308 16 1 8.1425 6.1096 -0.3059 17 6 5.9870 1.0969 -0.0055 18 6 7.3444 0.7131 -0.0127 19 8 8.2144 1.5560 0.0825 20 16 4.6364 -0.0187 0.0010 21 6 3.4505 1.2798 0.0002 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2126 2.3051 -0.0003 26 1 1.3197 4.5050 -0.0019 27 1 3.7610 4.6594 -0.0017 28 1 4.9335 3.6869 2.0511 29 1 7.6102 -0.3297 -0.1027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396344441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:36 Heat of formation + Delta-G solvation = -63.925478 kcal Electronic energy + Delta-G solvation = -17066.119495 eV Core-core repulsion = 14237.779349 eV Total energy + Delta-G solvation = -2828.340146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.13455 -39.72155 -38.65055 -36.48627 -34.37280 -31.37682 -30.44009 -28.57387 -28.12357 -25.09726 -23.97893 -22.38842 -21.15244 -19.65060 -18.73047 -17.63952 -17.17868 -16.94658 -16.68981 -15.92848 -15.79380 -15.70016 -15.19213 -14.88141 -14.30377 -14.21308 -13.91586 -13.77031 -13.20289 -12.88789 -12.63791 -12.24661 -12.09318 -12.05675 -11.82465 -11.61599 -11.38325 -10.96811 -10.25306 -9.92200 -9.67686 -9.33828 -8.41938 -6.73359 -0.36083 0.35168 0.97304 1.01579 1.44623 1.59868 1.67684 1.78807 2.17469 2.26615 2.33078 2.61143 3.01629 3.73668 3.93684 4.04848 4.24149 4.33329 4.42224 4.43469 4.56592 4.73037 4.78993 5.09118 5.13017 5.24187 5.39909 5.48412 5.59431 5.80422 5.84202 6.28311 6.41306 6.42419 7.21337 7.60516 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.009079 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.711538 B = 3083.180574 C = 4303.360925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.134 3.866 4 C -0.186 4.186 5 C -0.092 4.092 6 C -0.117 4.117 7 C -0.070 4.070 8 C 0.094 3.906 9 C -0.420 4.420 10 H 0.084 0.916 11 C 0.003 3.997 12 N -0.744 5.744 13 Si 1.117 2.883 14 H -0.241 1.241 15 H -0.259 1.259 16 H -0.271 1.271 17 C -0.491 4.491 18 C 0.380 3.620 19 O -0.561 6.561 20 S 0.032 5.968 21 C -0.156 4.156 22 H 0.070 0.930 23 H 0.120 0.880 24 H 0.068 0.932 25 H 0.172 0.828 26 H 0.162 0.838 27 H 0.121 0.879 28 H 0.287 0.713 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 0.174 -2.261 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.083 3.917 4 C -0.206 4.206 5 C -0.113 4.113 6 C -0.137 4.137 7 C -0.078 4.078 8 C 0.085 3.915 9 C -0.448 4.448 10 H 0.102 0.898 11 C -0.220 4.220 12 N -0.364 5.364 13 Si 0.931 3.069 14 H -0.165 1.165 15 H -0.183 1.183 16 H -0.196 1.196 17 C -0.606 4.606 18 C 0.255 3.745 19 O -0.451 6.451 20 S 0.289 5.711 21 C -0.271 4.271 22 H 0.088 0.912 23 H 0.138 0.862 24 H 0.087 0.913 25 H 0.190 0.810 26 H 0.180 0.820 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.826 0.326 -1.754 11.960 hybrid contribution 0.244 -0.703 -0.312 0.807 sum -11.582 -0.377 -2.066 11.770 Atomic orbital electron populations 1.23410 0.75901 1.05738 1.02623 1.86053 1.23942 1.26281 1.88706 1.18401 0.88521 0.86003 0.98755 1.21359 1.01131 0.90614 1.07534 1.21056 0.93040 0.98578 0.98621 1.21271 0.94369 0.96741 1.01349 1.19603 0.93077 0.92960 1.02200 1.18160 0.90145 0.92966 0.90228 1.20910 1.05931 0.97542 1.20444 0.89790 1.28945 0.93120 1.08012 0.91907 1.70393 1.17734 1.30858 1.17381 0.83024 0.76968 0.68528 0.78347 1.16465 1.18263 1.19606 1.23024 0.98598 0.95885 1.43104 1.20956 0.86303 0.93116 0.74147 1.90415 1.52046 1.56730 1.45950 1.82566 0.94588 1.07786 1.86111 1.22154 0.95208 0.97867 1.11868 0.91153 0.86190 0.91336 0.81050 0.82039 0.86062 0.90063 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.80 113.37 1.11 1.44 15 2 O -0.34 -10.92 10.45 -92.41 -0.97 -11.88 15 3 C 0.13 4.98 6.73 22.79 0.15 5.14 15 4 C -0.19 -5.61 9.02 22.30 0.20 -5.40 15 5 C -0.09 -2.99 10.01 22.16 0.22 -2.77 15 6 C -0.12 -4.94 8.35 22.72 0.19 -4.75 15 7 C -0.07 -3.39 5.05 -20.22 -0.10 -3.49 15 8 C 0.09 5.15 5.01 -20.66 -0.10 5.05 15 9 C -0.42 -22.87 7.76 23.17 0.18 -22.69 15 10 H 0.08 4.88 6.76 -2.91 -0.02 4.86 15 11 C 0.00 0.15 3.90 85.50 0.33 0.48 15 12 N -0.74 -36.57 11.66 21.96 0.26 -36.31 15 13 Si 1.12 40.25 30.00 68.60 2.06 42.31 15 14 H -0.24 -7.64 7.11 99.48 0.71 -6.93 15 15 H -0.26 -8.83 7.11 99.48 0.71 -8.13 15 16 H -0.27 -9.89 7.11 99.48 0.71 -9.18 15 17 C -0.49 -26.24 6.24 23.13 0.14 -26.09 15 18 C 0.38 19.90 11.41 68.51 0.78 20.69 15 19 O -0.56 -32.91 15.29 -3.74 -0.06 -32.96 15 20 S 0.03 1.47 23.06 -56.49 -1.30 0.17 15 21 C -0.16 -7.12 6.38 23.10 0.15 -6.97 15 22 H 0.07 1.11 7.65 -2.38 -0.02 1.09 15 23 H 0.12 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.07 1.11 7.65 -2.39 -0.02 1.09 15 25 H 0.17 3.51 6.24 -2.91 -0.02 3.49 15 26 H 0.16 3.89 8.06 -2.91 -0.02 3.87 15 27 H 0.12 5.22 6.02 -2.91 -0.02 5.21 15 28 H 0.29 15.20 6.90 -92.71 -0.64 14.56 15 29 H 0.08 3.61 8.06 -2.91 -0.02 3.58 15 Total: -1.00 -67.44 266.90 4.57 -62.87 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.32 Total: 15.19 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 3.26 Total: -39.38 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.26 Total: -36.31 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.02 Total: -44.85 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.06 Total: 42.31 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.30 Total: 0.17 kcal Total: -67.44 4.57 -62.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.054 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds