Wall clock time and date at job start Mon Mar 30 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35737 * 116.99740 * 2 1 4 4 C 1.32432 * 124.32710 * 180.02562 * 3 2 1 5 5 C 1.45574 * 114.76351 * 179.97438 * 4 3 2 6 6 C 1.40892 * 128.93551 * 179.97438 * 5 4 3 7 7 C 1.39467 * 120.77548 * 180.02562 * 6 5 4 8 8 C 1.46991 * 119.84192 * 180.27426 * 7 6 5 9 9 O 1.21288 * 119.99871 * 359.72408 * 8 7 6 10 10 C 1.39678 * 120.32113 * 359.97438 * 7 6 5 11 11 C 1.39982 * 119.70651 * 0.02562 * 10 7 6 12 12 C 1.41062 * 119.98030 * 179.97438 * 11 10 7 13 13 H 1.08004 * 120.00231 * 205.11097 * 12 11 10 14 14 C 1.39886 * 120.00268 * 25.11380 * 12 11 10 15 15 N 1.30888 * 119.99507 * 17.94817 * 14 12 11 16 16 Si 1.86799 * 120.00354 * 197.94898 * 14 12 11 17 17 H 1.48491 * 109.47173 * 94.68256 * 16 14 12 18 18 H 1.48499 * 109.46969 * 214.68629 * 16 14 12 19 19 H 1.48502 * 109.46846 * 334.68246 * 16 14 12 20 20 C 1.39664 * 111.84456 * 359.97438 * 5 4 3 21 21 S 1.75266 * 124.33227 * 359.97438 * 3 2 1 22 22 H 1.09000 * 109.47258 * 59.99378 * 1 2 3 23 23 H 1.08996 * 109.46984 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47173 * 299.99541 * 1 2 3 25 25 H 1.07994 * 122.61954 * 359.96247 * 4 3 2 26 26 H 1.07997 * 119.61931 * 0.04331 * 6 5 4 27 27 H 1.07999 * 120.00482 * 179.72587 * 8 7 6 28 28 H 1.08000 * 120.14860 * 179.97438 * 10 7 6 29 29 H 0.97001 * 119.99927 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.3587 1.3784 -0.0005 5 6 3.7948 2.7673 -0.0010 6 6 5.1057 3.2837 -0.0011 7 6 5.3305 4.6601 -0.0010 8 6 6.7067 5.1765 -0.0072 9 8 7.6435 4.4062 -0.0073 10 6 4.2541 5.5504 -0.0014 11 6 2.9447 5.0556 -0.0013 12 6 1.8534 5.9495 -0.0012 13 1 0.8990 5.6365 0.3958 14 6 2.0073 7.2413 -0.5153 15 7 3.0172 7.5168 -1.3011 16 14 0.7717 8.5730 -0.0805 17 1 1.2710 9.3512 1.0815 18 1 0.5914 9.4795 -1.2428 19 1 -0.5297 7.9469 0.2654 20 6 2.7137 3.6515 -0.0014 21 16 1.2043 2.7472 -0.0006 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 4.0521 0.5505 -0.0003 26 1 5.9464 2.6058 -0.0014 27 1 6.8837 6.2419 -0.0117 28 1 4.4314 6.6157 -0.0010 29 1 3.1242 8.4127 -1.6573 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396345328.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:19 Heat of formation + Delta-G solvation = -38.229717 kcal Electronic energy + Delta-G solvation = -16503.691660 eV Core-core repulsion = 13676.465765 eV Total energy + Delta-G solvation = -2827.225895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.88464 -38.49399 -37.31512 -34.63426 -32.91469 -30.29344 -28.60672 -26.52517 -25.63358 -23.84276 -22.12224 -20.78532 -19.42818 -18.05463 -16.94895 -15.84165 -15.72416 -15.56674 -15.44626 -14.97178 -14.30391 -13.51500 -13.48374 -13.21305 -12.90827 -12.55597 -12.46681 -11.99797 -11.77635 -11.32642 -11.32320 -11.00831 -10.73980 -10.60080 -10.15638 -9.72872 -9.60077 -9.38128 -8.99217 -8.39381 -7.32140 -7.06030 -6.91886 -4.61091 1.65587 1.86664 2.05733 2.78006 2.82206 2.94669 2.98124 3.29743 3.41763 3.56397 3.73884 4.41764 5.07468 5.20859 5.24913 5.28125 5.52044 5.96202 6.01035 6.07412 6.34705 6.45004 6.59223 6.89191 6.92713 6.99027 7.34990 7.35591 7.51109 7.55881 7.79926 8.16069 8.23286 8.49195 8.53039 9.88435 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.008880 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.161699 B = 3152.339664 C = 5027.843340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.292 6.292 3 C 0.015 3.985 4 C -0.172 4.172 5 C -0.034 4.034 6 C -0.152 4.152 7 C -0.159 4.159 8 C 0.390 3.610 9 O -0.489 6.489 10 C -0.116 4.116 11 C 0.137 3.863 12 C -0.452 4.452 13 H 0.083 0.917 14 C 0.078 3.922 15 N -0.783 5.783 16 Si 0.913 3.087 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.194 4.194 21 S 0.034 5.966 22 H 0.057 0.943 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.135 0.865 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 -3.290 1.640 5.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.207 6.207 3 C -0.143 4.143 4 C -0.203 4.203 5 C -0.040 4.040 6 C -0.174 4.174 7 C -0.161 4.161 8 C 0.252 3.748 9 O -0.365 6.365 10 C -0.139 4.139 11 C 0.131 3.869 12 C -0.481 4.481 13 H 0.101 0.899 14 C -0.142 4.142 15 N -0.407 5.407 16 Si 0.736 3.264 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.309 4.309 21 S 0.293 5.707 22 H 0.076 0.924 23 H 0.118 0.882 24 H 0.075 0.925 25 H 0.152 0.848 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.152 0.848 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.293 -3.376 1.480 6.450 hybrid contribution 0.487 0.399 0.026 0.630 sum -4.806 -2.977 1.507 5.851 Atomic orbital electron populations 1.23120 0.78534 1.03735 1.01964 1.85912 1.20781 1.23818 1.90171 1.22757 0.95509 0.88471 1.07570 1.20320 0.92545 0.96520 1.10921 1.18437 0.93569 0.89605 1.02384 1.20311 0.93437 0.93753 1.09876 1.20286 0.94986 0.94207 1.06668 1.24066 0.87591 0.94262 0.68910 1.90421 1.46294 1.62763 1.37008 1.21441 0.90287 0.98884 1.03336 1.16857 0.93500 0.87345 0.89188 1.19529 0.97712 0.96035 1.34804 0.89916 1.25916 0.96384 0.99623 0.92264 1.69804 1.27755 1.22500 1.20655 0.86199 0.81090 0.79850 0.79212 1.18949 1.19965 1.18353 1.22521 0.92348 0.97416 1.18648 1.83708 1.09909 0.94518 1.82597 0.92447 0.88154 0.92495 0.84775 0.87434 0.89213 0.84771 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.23 101.05 1.03 1.32 15 2 O -0.29 -4.96 10.56 -18.92 -0.20 -5.16 15 3 C 0.02 0.30 7.11 28.81 0.20 0.50 15 4 C -0.17 -3.55 10.41 -38.58 -0.40 -3.95 15 5 C -0.03 -0.77 6.02 -105.44 -0.63 -1.41 15 6 C -0.15 -3.45 9.64 -38.12 -0.37 -3.82 15 7 C -0.16 -3.52 5.84 -105.36 -0.62 -4.14 15 8 C 0.39 7.57 11.43 34.28 0.39 7.97 15 9 O -0.49 -10.54 17.11 5.55 0.09 -10.44 15 10 C -0.12 -2.71 8.40 -38.39 -0.32 -3.04 15 11 C 0.14 3.38 5.59 -106.61 -0.60 2.79 15 12 C -0.45 -10.94 8.81 -37.90 -0.33 -11.28 15 13 H 0.08 1.97 7.73 -52.48 -0.41 1.56 15 14 C 0.08 1.76 5.12 -17.34 -0.09 1.67 15 15 N -0.78 -18.06 10.98 55.54 0.61 -17.45 15 16 Si 0.91 17.02 29.60 -169.99 -5.03 11.99 15 17 H -0.26 -4.86 7.11 56.52 0.40 -4.45 15 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 20 C -0.19 -4.61 6.37 -37.49 -0.24 -4.85 15 21 S 0.03 0.69 21.42 -107.50 -2.30 -1.61 15 22 H 0.06 0.69 8.01 -51.93 -0.42 0.28 15 23 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.06 0.68 8.01 -51.93 -0.42 0.26 15 25 H 0.13 2.49 8.06 -52.49 -0.42 2.07 15 26 H 0.11 2.35 7.58 -52.49 -0.40 1.95 15 27 H 0.09 1.43 8.06 -52.49 -0.42 1.01 15 28 H 0.13 3.07 6.16 -52.49 -0.32 2.75 15 29 H 0.29 5.96 8.30 -40.82 -0.34 5.62 15 LS Contribution 276.00 15.07 4.16 4.16 Total: -1.00 -27.31 276.00 -7.00 -34.31 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.36 Total: 2.43 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -1.97 Total: -18.22 kcal Atomic # 7 Polarization: -18.06 SS G_CDS: 0.61 Total: -17.45 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.10 Total: -15.61 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.30 Total: -1.61 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.31 -7.00 -34.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345328.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.924 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds