Wall clock time and date at job start Mon Mar 30 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31953 * 122.50406 * 2 1 4 4 S 1.75294 * 111.33215 * 180.02562 * 3 2 1 5 5 C 1.75931 * 92.14854 * 359.97438 * 4 3 2 6 6 C 1.39605 * 109.82862 * 0.02562 * 5 4 3 7 7 C 1.41514 * 119.64287 * 179.97438 * 6 5 4 8 8 C 1.37082 * 121.86513 * 0.02562 * 7 6 5 9 9 C 1.39739 * 120.59805 * 359.70689 * 8 7 6 10 10 C 1.46985 * 120.54611 * 180.30587 * 9 8 7 11 11 O 1.21568 * 120.00462 * 174.82586 * 10 9 8 12 12 O 1.34859 * 119.99951 * 354.83232 * 10 9 8 13 13 C 1.42150 * 130.29167 * 179.97438 * 5 4 3 14 14 C 1.40310 * 120.45569 * 0.02562 * 13 5 4 15 15 H 1.07999 * 119.99899 * 229.75597 * 14 13 5 16 16 C 1.40369 * 119.99702 * 49.74679 * 14 13 5 17 17 N 1.30604 * 119.99833 * 200.96769 * 16 14 13 18 18 Si 1.86801 * 120.00083 * 20.97083 * 16 14 13 19 19 H 1.48500 * 109.46984 * 265.04159 * 18 16 14 20 20 H 1.48500 * 109.47014 * 25.03807 * 18 16 14 21 21 H 1.48491 * 109.47028 * 145.04173 * 18 16 14 22 22 H 1.09006 * 109.47042 * 90.02894 * 1 2 3 23 23 H 1.09003 * 109.47216 * 210.02175 * 1 2 3 24 24 H 1.09001 * 109.47621 * 330.02302 * 1 2 3 25 25 H 1.08000 * 124.33973 * 0.02562 * 3 2 1 26 26 H 1.07992 * 119.06492 * 180.02562 * 7 6 5 27 27 H 1.07996 * 119.69887 * 180.02562 * 8 7 6 28 28 H 0.96701 * 117.00406 * 180.02562 * 12 10 9 29 29 H 0.96994 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1128 0.0000 4 16 3.9358 0.7732 -0.0007 5 6 3.6598 -0.9643 -0.0003 6 6 2.2885 -1.2261 -0.0002 7 6 1.8316 -2.5654 -0.0003 8 6 2.6998 -3.6262 -0.0001 9 6 4.0811 -3.4149 -0.0058 10 6 5.0110 -4.5532 -0.0123 11 8 6.2071 -4.3605 -0.1122 12 8 4.5372 -5.8115 0.0924 13 6 4.5865 -2.0423 -0.0010 14 6 5.9673 -1.7931 -0.0017 15 1 6.6056 -2.2917 -0.7161 16 6 6.5190 -0.8956 0.9259 17 7 7.6811 -0.3473 0.6924 18 14 5.5909 -0.4855 2.4944 19 1 4.8037 0.7575 2.2931 20 1 4.6736 -1.6030 2.8333 21 1 6.5577 -0.2849 3.6034 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3634 0.8902 0.5135 25 1 1.7913 2.1058 0.0004 26 1 0.7688 -2.7571 -0.0007 27 1 2.3127 -4.6344 -0.0007 28 1 5.1871 -6.5275 0.0839 29 1 8.0621 0.2731 1.3332 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396350035.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:14 Heat of formation + Delta-G solvation = -58.517906 kcal Electronic energy + Delta-G solvation = -17176.454182 eV Core-core repulsion = 14348.348525 eV Total energy + Delta-G solvation = -2828.105657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12161 -38.01537 -35.33514 -34.70746 -33.61381 -30.69569 -29.45602 -27.61798 -25.44644 -23.30249 -21.54613 -20.41601 -18.77033 -17.97405 -17.16214 -16.31524 -15.56584 -15.12156 -14.51261 -14.37215 -14.22570 -13.54366 -13.21876 -13.04048 -12.52976 -12.44994 -12.20040 -11.92736 -11.67634 -11.30085 -11.18810 -10.84949 -10.59343 -10.42085 -10.30226 -9.91459 -9.62197 -9.40190 -9.18052 -8.21301 -7.62576 -7.19409 -6.70235 -4.69937 1.33785 2.32868 2.38388 2.63005 2.92999 3.07979 3.10753 3.22166 3.73995 3.87375 4.16643 4.38420 4.98559 5.22626 5.50912 5.73996 5.86693 5.89636 6.11179 6.14272 6.28766 6.38146 6.59280 6.75071 6.84860 6.98073 7.19613 7.37480 7.44581 7.50087 7.76821 8.18914 8.30277 8.49302 9.09607 9.79676 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.012269 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.202567 B = 2281.591211 C = 3558.274660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.106 4.106 3 C -0.219 4.219 4 S 0.086 5.914 5 C -0.201 4.201 6 C -0.013 4.013 7 C -0.222 4.222 8 C -0.012 4.012 9 C -0.250 4.250 10 C 0.517 3.483 11 O -0.518 6.518 12 O -0.535 6.535 13 C 0.158 3.842 14 C -0.400 4.400 15 H 0.119 0.881 16 C 0.093 3.907 17 N -0.768 5.768 18 Si 0.844 3.156 19 H -0.215 1.215 20 H -0.244 1.244 21 H -0.270 1.270 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.153 0.847 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.394 0.606 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 0.770 1.054 9.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.353 4.353 4 S 0.354 5.646 5 C -0.316 4.316 6 C -0.022 4.022 7 C -0.243 4.243 8 C -0.032 4.032 9 C -0.256 4.256 10 C 0.366 3.634 11 O -0.409 6.409 12 O -0.347 6.347 13 C 0.151 3.849 14 C -0.425 4.425 15 H 0.137 0.863 16 C -0.131 4.131 17 N -0.390 5.390 18 Si 0.666 3.334 19 H -0.138 1.138 20 H -0.167 1.167 21 H -0.196 1.196 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.171 0.829 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.250 0.750 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.457 2.344 1.065 7.889 hybrid contribution -0.928 -1.168 0.656 1.630 sum -8.386 1.176 1.721 8.641 Atomic orbital electron populations 1.20433 0.90601 1.02027 1.01666 1.19720 0.96215 0.91477 1.04597 1.24946 0.98384 1.01356 1.10627 1.84203 1.02658 1.00394 1.77382 1.22805 0.95953 0.95671 1.17176 1.19033 0.90915 0.93217 0.99073 1.19992 0.97883 0.89856 1.16600 1.20677 0.92132 0.97579 0.92845 1.19416 0.91097 0.89476 1.25658 1.20660 0.87479 0.81486 0.73743 1.90857 1.17369 1.85017 1.47702 1.84623 1.45180 1.17410 1.87461 1.17747 0.92056 0.87263 0.87795 1.19718 0.92174 1.16907 1.13740 0.86309 1.26154 0.95022 0.91604 1.00350 1.69587 1.16231 1.18400 1.34797 0.87215 0.81573 0.83732 0.80905 1.13820 1.16697 1.19589 0.91731 0.91633 0.92242 0.82893 0.87814 0.86827 0.75026 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 10.00 36.00 0.36 -0.84 15 2 C -0.11 -1.92 5.97 -103.69 -0.62 -2.54 15 3 C -0.22 -3.87 10.76 28.82 0.31 -3.56 15 4 S 0.09 1.83 18.66 -107.50 -2.01 -0.18 15 5 C -0.20 -4.74 4.92 -37.57 -0.18 -4.93 15 6 C -0.01 -0.29 6.01 -105.29 -0.63 -0.92 15 7 C -0.22 -4.44 9.69 -38.75 -0.38 -4.82 15 8 C -0.01 -0.26 9.56 -39.44 -0.38 -0.64 15 9 C -0.25 -5.99 6.07 -102.57 -0.62 -6.61 15 10 C 0.52 11.94 8.23 34.27 0.28 12.22 15 11 O -0.52 -13.50 14.81 -19.32 -0.29 -13.78 15 12 O -0.54 -9.68 12.71 -40.93 -0.52 -10.20 15 13 C 0.16 4.05 4.63 -104.39 -0.48 3.57 15 14 C -0.40 -10.90 7.66 -38.00 -0.29 -11.19 15 15 H 0.12 3.56 6.87 -52.49 -0.36 3.20 15 16 C 0.09 2.41 4.83 -17.27 -0.08 2.32 15 17 N -0.77 -19.92 13.92 55.57 0.77 -19.14 15 18 Si 0.84 19.39 24.97 -169.99 -4.24 15.14 15 19 H -0.21 -4.56 5.65 56.52 0.32 -4.24 15 20 H -0.24 -5.95 7.11 56.52 0.40 -5.55 15 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 23 H 0.06 0.85 7.49 -51.93 -0.39 0.46 15 24 H 0.06 0.69 8.12 -51.93 -0.42 0.27 15 25 H 0.15 2.17 8.06 -52.49 -0.42 1.75 15 26 H 0.10 1.76 7.51 -52.49 -0.39 1.36 15 27 H 0.11 2.06 7.62 -52.49 -0.40 1.66 15 28 H 0.39 5.14 9.11 45.56 0.42 5.56 15 29 H 0.29 6.78 8.29 -40.82 -0.34 6.44 15 LS Contribution 264.46 15.07 3.99 3.99 Total: -1.00 -29.73 264.46 -6.63 -36.36 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -1.61 Total: 5.76 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.72 Total: -17.94 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.77 Total: -19.14 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.81 Total: -23.99 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.24 Total: 15.14 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.01 Total: -0.18 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.73 -6.63 -36.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396350035.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.159 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds