Wall clock time and date at job start Mon Mar 30 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32434 * 122.05405 * 2 1 4 4 S 1.75415 * 110.90941 * 180.02562 * 3 2 1 5 5 C 1.76232 * 91.59615 * 359.97438 * 4 3 2 6 6 C 1.39015 * 129.76728 * 180.28711 * 5 4 3 7 7 C 1.40237 * 120.44598 * 180.22206 * 6 5 4 8 8 C 1.40468 * 120.56357 * 179.74790 * 7 6 5 9 9 H 1.08000 * 119.99919 * 214.23387 * 8 7 6 10 10 C 1.40158 * 120.00371 * 34.22495 * 8 7 6 11 11 N 1.30717 * 120.00248 * 191.30713 * 10 8 7 12 12 Si 1.86804 * 119.99663 * 11.31080 * 10 8 7 13 13 H 1.48505 * 109.46949 * 267.37965 * 12 10 8 14 14 H 1.48501 * 109.47352 * 27.37790 * 12 10 8 15 15 H 1.48493 * 109.47129 * 147.37844 * 12 10 8 16 16 C 1.46891 * 118.87005 * 359.47471 * 7 6 5 17 17 C 1.47048 * 120.35836 * 180.22720 * 16 7 6 18 18 O 1.21557 * 120.00474 * 355.47931 * 17 16 7 19 19 O 1.34829 * 119.99616 * 175.48505 * 17 16 7 20 20 C 1.38080 * 119.27822 * 0.24693 * 16 7 6 21 21 C 1.40516 * 109.30432 * 359.97438 * 5 4 3 22 22 H 1.08994 * 109.47721 * 269.98115 * 1 2 3 23 23 H 1.09003 * 109.47081 * 29.98640 * 1 2 3 24 24 H 1.09011 * 109.46852 * 149.97805 * 1 2 3 25 25 H 1.08009 * 124.54230 * 0.03357 * 3 2 1 26 26 H 1.08000 * 119.77502 * 359.94729 * 6 5 4 27 27 H 0.97004 * 119.99802 * 179.97438 * 11 10 8 28 28 H 0.96700 * 116.99790 * 180.02562 * 19 17 16 29 29 H 1.07998 * 119.63117 * 180.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2098 1.1224 0.0000 4 16 3.9309 0.7834 -0.0007 5 6 3.6385 -0.9545 -0.0002 6 6 4.5447 -2.0087 0.0049 7 6 4.0912 -3.3357 -0.0004 8 6 5.0047 -4.4027 -0.0006 9 1 4.7702 -5.3143 -0.5302 10 6 6.2207 -4.2845 0.6864 11 7 7.1607 -5.1754 0.5095 12 14 6.4978 -2.8536 1.8549 13 1 7.1510 -1.7376 1.1247 14 1 5.1925 -2.3952 2.3946 15 1 7.3703 -3.2905 2.9743 16 6 2.6446 -3.5908 0.0002 17 6 2.1331 -4.9695 -0.0002 18 8 2.9055 -5.9044 -0.0842 19 8 0.8073 -5.1965 0.0923 20 6 1.7704 -2.5220 0.0009 21 6 2.2537 -1.1926 0.0010 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8899 -0.5142 25 1 1.7808 2.1137 0.0005 26 1 5.6052 -1.8043 0.0086 27 1 8.0024 -5.0933 0.9847 28 1 0.5187 -6.1194 0.0884 29 1 0.7057 -2.7030 0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396352262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:15 Heat of formation + Delta-G solvation = -81.226606 kcal Electronic energy + Delta-G solvation = -16982.671771 eV Core-core repulsion = 14153.581391 eV Total energy + Delta-G solvation = -2829.090380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.07174 -39.84148 -37.29808 -36.55403 -35.22039 -32.33421 -31.62721 -28.70152 -27.46658 -24.88599 -23.52521 -22.43069 -20.23729 -19.66612 -18.72422 -18.48973 -17.46696 -16.99695 -16.35035 -16.07682 -15.60239 -15.02510 -14.88537 -14.60932 -14.45607 -14.02210 -13.82090 -13.64147 -13.04920 -12.85627 -12.57502 -12.56420 -12.37419 -12.27099 -11.79407 -11.63598 -11.55515 -11.15962 -10.92060 -10.34056 -9.31028 -9.07433 -8.58614 -6.64006 -0.09286 0.08624 0.77511 1.13992 1.24288 1.29974 1.33289 1.49164 1.87810 1.99758 2.38941 2.51694 3.22003 3.86555 4.08053 4.31786 4.47258 4.58993 4.66139 4.74062 4.93777 4.97569 5.01395 5.10010 5.18197 5.26873 5.57190 5.61112 5.79877 5.81952 5.90466 6.21386 6.43521 6.55460 7.30820 7.93904 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.016713 B = 0.010320 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.983003 B = 2712.442940 C = 4192.301247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.054 4.054 3 C -0.241 4.241 4 S 0.016 5.984 5 C -0.060 4.060 6 C -0.246 4.246 7 C 0.119 3.881 8 C -0.418 4.418 9 H 0.090 0.910 10 C 0.049 3.951 11 N -0.811 5.811 12 Si 0.956 3.044 13 H -0.254 1.254 14 H -0.253 1.253 15 H -0.267 1.267 16 C -0.239 4.239 17 C 0.527 3.473 18 O -0.547 6.547 19 O -0.511 6.511 20 C 0.041 3.959 21 C -0.217 4.217 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.189 0.811 26 H 0.105 0.895 27 H 0.304 0.696 28 H 0.424 0.576 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 9.256 1.372 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.064 4.064 3 C -0.373 4.373 4 S 0.278 5.722 5 C -0.175 4.175 6 C -0.272 4.272 7 C 0.112 3.888 8 C -0.445 4.445 9 H 0.108 0.892 10 C -0.171 4.171 11 N -0.434 5.434 12 Si 0.779 3.221 13 H -0.179 1.179 14 H -0.176 1.176 15 H -0.193 1.193 16 C -0.242 4.242 17 C 0.376 3.624 18 O -0.440 6.440 19 O -0.325 6.325 20 C 0.021 3.979 21 C -0.223 4.223 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.206 0.794 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.284 0.716 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.690 10.236 1.367 13.497 hybrid contribution -0.452 -1.570 0.245 1.652 sum -9.142 8.666 1.612 12.700 Atomic orbital electron populations 1.20640 0.87516 1.03784 1.03302 1.18948 0.98373 0.90134 0.98975 1.24877 0.93669 1.02658 1.16135 1.83846 1.08920 0.97886 1.81573 1.22733 0.97153 0.96872 1.00774 1.20143 0.97150 0.90793 1.19113 1.18359 0.90605 0.91772 0.88051 1.19970 0.98059 1.01567 1.24930 0.89200 1.27018 0.93561 0.98866 0.97648 1.69595 1.05230 1.33895 1.34706 0.85602 0.80100 0.78055 0.78384 1.17894 1.17633 1.19255 1.19781 0.93259 0.89713 1.21452 1.20646 0.79889 0.89608 0.72271 1.90861 1.58178 1.46448 1.48503 1.84520 1.24114 1.37727 1.86104 1.21258 0.99253 0.89311 0.88068 1.18030 0.91187 0.94367 1.18705 0.90007 0.89501 0.91080 0.79414 0.87718 0.88509 0.71611 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 9.89 71.23 0.70 -1.27 15 2 C -0.05 -1.64 5.82 -20.38 -0.12 -1.76 15 3 C -0.24 -7.00 10.80 66.70 0.72 -6.28 15 4 S 0.02 0.55 23.29 -56.49 -1.32 -0.76 15 5 C -0.06 -2.58 6.44 23.01 0.15 -2.43 15 6 C -0.25 -11.83 7.03 22.94 0.16 -11.67 15 7 C 0.12 6.11 5.21 -19.98 -0.10 6.01 15 8 C -0.42 -23.48 8.45 23.28 0.20 -23.28 15 9 H 0.09 5.61 6.01 -2.91 -0.02 5.59 15 10 C 0.05 2.59 5.47 85.33 0.47 3.06 15 11 N -0.81 -43.34 13.92 21.86 0.30 -43.04 15 12 Si 0.96 42.40 24.47 68.60 1.68 44.08 15 13 H -0.25 -10.71 6.73 99.48 0.67 -10.04 15 14 H -0.25 -11.66 6.71 99.48 0.67 -11.00 15 15 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 16 C -0.24 -10.91 6.03 -18.74 -0.11 -11.03 15 17 C 0.53 22.76 8.23 70.13 0.58 23.34 15 18 O -0.55 -27.87 14.49 19.65 0.28 -27.59 15 19 O -0.51 -15.79 12.66 -57.41 -0.73 -16.51 15 20 C 0.04 1.57 9.19 23.02 0.21 1.78 15 21 C -0.22 -8.40 5.85 -21.33 -0.12 -8.52 15 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.09 1.42 8.11 -2.39 -0.02 1.40 15 24 H 0.07 1.45 7.24 -2.38 -0.02 1.43 15 25 H 0.19 4.00 8.06 -2.91 -0.02 3.98 15 26 H 0.11 5.06 4.76 -2.91 -0.01 5.04 15 27 H 0.30 14.34 8.29 -92.71 -0.77 13.57 15 28 H 0.42 8.72 9.11 -74.06 -0.67 8.05 15 29 H 0.15 4.72 6.81 -2.91 -0.02 4.70 15 Total: -1.00 -65.23 264.33 3.42 -61.81 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.47 Total: 14.07 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 2.73 Total: -32.05 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.30 Total: -43.04 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.44 Total: -44.10 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.68 Total: 44.08 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -1.32 Total: -0.76 kcal Total: -65.23 3.42 -61.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396352262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.421 kcal (2) G-P(sol) polarization free energy of solvation -65.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds