Wall clock time and date at job start Mon Mar 30 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35568 * 116.99660 * 2 1 4 4 C 1.38829 * 120.10672 * 0.02562 * 3 2 1 5 5 C 1.37395 * 120.47250 * 179.97438 * 4 3 2 6 6 C 1.40720 * 120.88520 * 0.04166 * 5 4 3 7 7 C 1.46729 * 129.35116 * 179.97438 * 6 5 4 8 8 C 1.40769 * 123.29497 * 359.97139 * 7 6 5 9 9 H 1.07998 * 120.00060 * 337.30503 * 8 7 6 10 10 C 1.39765 * 119.99770 * 157.30565 * 8 7 6 11 11 N 1.31042 * 119.99831 * 160.59312 * 10 8 7 12 12 Si 1.86803 * 120.00196 * 340.59103 * 10 8 7 13 13 H 1.48495 * 109.46990 * 94.05646 * 12 10 8 14 14 H 1.48495 * 109.46938 * 214.05740 * 12 10 8 15 15 H 1.48501 * 109.46931 * 334.05611 * 12 10 8 16 16 C 1.36412 * 113.40886 * 179.97438 * 7 6 5 17 17 S 1.69984 * 111.92068 * 359.73440 * 16 7 6 18 18 C 1.39119 * 119.45017 * 359.95525 * 6 5 4 19 19 C 1.40148 * 120.09505 * 180.02562 * 3 2 1 20 20 C 1.46316 * 120.07873 * 359.97438 * 19 3 2 21 21 O 1.21371 * 119.99753 * 0.02785 * 20 19 3 22 22 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46822 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.47137 * 59.99893 * 1 2 3 25 25 H 1.08010 * 119.76044 * 359.97382 * 4 3 2 26 26 H 1.08004 * 119.55694 * 179.97438 * 5 4 3 27 27 H 0.96996 * 119.99737 * 180.02562 * 11 10 8 28 28 H 1.08004 * 124.04079 * 179.97438 * 16 7 6 29 29 H 1.08002 * 120.00415 * 180.02562 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2080 0.0000 4 6 1.2904 2.3736 0.0005 5 6 1.9063 3.6018 0.0011 6 6 3.3096 3.7062 0.0002 7 6 4.1532 4.9067 0.0001 8 6 3.6348 6.2155 0.0002 9 1 2.6337 6.3998 -0.3604 10 6 4.4158 7.2764 0.4671 11 7 4.1167 8.5073 0.1318 12 14 5.8861 6.9396 1.5691 13 1 7.1138 6.8398 0.7397 14 1 6.0370 8.0482 2.5455 15 1 5.6761 5.6630 2.2982 16 6 5.4890 4.6304 -0.0003 17 16 5.7910 2.9576 0.0068 18 6 4.0816 2.5489 -0.0003 19 6 3.4439 1.2837 -0.0005 20 6 4.2445 0.0591 -0.0005 21 8 3.6968 -1.0240 -0.0006 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2119 2.3145 0.0005 26 1 1.3053 4.4992 0.0011 27 1 4.6589 9.2435 0.4555 28 1 6.2624 5.3843 -0.0009 29 1 5.3229 0.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396354130.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:44 Heat of formation + Delta-G solvation = -36.334290 kcal Electronic energy + Delta-G solvation = -16771.919593 eV Core-core repulsion = 13944.775890 eV Total energy + Delta-G solvation = -2827.143703 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05379 -37.98403 -37.63679 -34.66037 -32.59991 -31.10011 -28.74484 -27.07352 -26.18889 -23.93634 -22.35756 -21.24554 -19.41609 -18.12131 -16.96391 -16.59468 -15.76375 -15.61450 -15.49236 -15.02768 -14.44159 -13.93792 -13.74810 -13.38110 -13.04012 -12.74468 -12.60303 -12.28247 -11.84965 -11.58691 -11.29150 -10.99398 -10.89528 -10.59900 -10.00822 -9.84081 -9.70436 -9.36340 -9.17887 -8.72477 -7.51431 -7.11213 -7.04177 -4.59215 1.01878 1.62409 2.37409 2.68314 2.98584 3.11932 3.25038 3.44992 3.46483 3.52913 3.93597 4.18315 4.66956 5.00769 5.04153 5.21158 5.25008 5.42402 5.51009 5.53719 5.76345 5.83841 6.17025 6.40565 6.56272 6.69813 6.81339 6.96608 7.28008 7.47718 7.63244 7.89555 8.12825 8.28371 8.62977 9.90966 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.006878 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.415587 B = 4070.197738 C = 4860.598930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.289 6.289 3 C 0.196 3.804 4 C -0.249 4.249 5 C 0.010 3.990 6 C -0.111 4.111 7 C 0.097 3.903 8 C -0.416 4.416 9 H 0.092 0.908 10 C 0.087 3.913 11 N -0.801 5.801 12 Si 0.919 3.081 13 H -0.272 1.272 14 H -0.295 1.295 15 H -0.240 1.240 16 C -0.473 4.473 17 S 0.092 5.908 18 C -0.060 4.060 19 C -0.220 4.220 20 C 0.384 3.616 21 O -0.464 6.464 22 H 0.097 0.903 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.288 0.712 28 H 0.140 0.860 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 -8.695 0.923 9.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.200 6.200 3 C 0.147 3.853 4 C -0.271 4.271 5 C -0.010 4.010 6 C -0.120 4.120 7 C 0.088 3.912 8 C -0.446 4.446 9 H 0.110 0.890 10 C -0.134 4.134 11 N -0.424 5.424 12 Si 0.747 3.253 13 H -0.198 1.198 14 H -0.223 1.223 15 H -0.163 1.163 16 C -0.607 4.607 17 S 0.356 5.644 18 C -0.177 4.177 19 C -0.229 4.229 20 C 0.244 3.756 21 O -0.339 6.339 22 H 0.115 0.885 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.149 0.851 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.108 -9.869 0.919 10.133 hybrid contribution -0.870 1.581 0.397 1.848 sum -2.977 -8.288 1.316 8.904 Atomic orbital electron populations 1.23093 0.79111 1.03655 1.01313 1.86228 1.20534 1.26178 1.87064 1.18959 0.90905 0.84240 0.91241 1.20868 0.99682 0.91905 1.14644 1.20946 0.93076 0.96866 0.90090 1.19434 0.93271 0.92820 1.06498 1.17365 0.89500 0.91769 0.92517 1.18955 1.02131 0.88692 1.34839 0.89033 1.26152 0.98086 0.94186 0.94976 1.69770 1.37398 1.00424 1.34818 0.86110 0.80090 0.79082 0.80064 1.19846 1.22267 1.16291 1.23596 0.99151 0.96841 1.41089 1.81673 1.00160 1.03003 1.79608 1.22781 0.99128 0.94620 1.01216 1.19296 0.90780 0.93796 1.18984 1.23451 0.94261 0.86757 0.71116 1.90516 1.76625 1.30760 1.36015 0.88450 0.92678 0.92666 0.85247 0.85117 0.90182 0.84291 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 15 2 O -0.29 -4.78 8.52 -40.50 -0.35 -5.13 15 3 C 0.20 3.48 6.70 -38.65 -0.26 3.22 15 4 C -0.25 -4.07 8.99 -39.67 -0.36 -4.43 15 5 C 0.01 0.19 9.83 -38.95 -0.38 -0.19 15 6 C -0.11 -2.40 6.02 -105.20 -0.63 -3.04 15 7 C 0.10 2.35 5.34 -106.17 -0.57 1.78 15 8 C -0.42 -10.62 9.57 -38.06 -0.36 -10.98 15 9 H 0.09 2.38 7.86 -52.49 -0.41 1.97 15 10 C 0.09 2.18 5.45 -17.32 -0.09 2.09 15 11 N -0.80 -20.48 13.94 55.54 0.77 -19.71 15 12 Si 0.92 20.51 24.56 -169.99 -4.17 16.34 15 13 H -0.27 -5.99 6.66 56.52 0.38 -5.61 15 14 H -0.29 -6.35 7.11 56.52 0.40 -5.94 15 15 H -0.24 -5.48 6.77 56.52 0.38 -5.10 15 16 C -0.47 -11.07 8.08 30.07 0.24 -10.83 15 17 S 0.09 1.82 22.37 -107.50 -2.41 -0.58 15 18 C -0.06 -1.23 6.34 -37.94 -0.24 -1.47 15 19 C -0.22 -4.15 5.91 -104.62 -0.62 -4.77 15 20 C 0.38 6.71 11.28 33.98 0.38 7.09 15 21 O -0.46 -9.07 15.94 -16.63 -0.27 -9.34 15 22 H 0.10 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.05 0.54 7.65 -51.93 -0.40 0.15 15 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 15 25 H 0.13 1.67 6.27 -52.48 -0.33 1.34 15 26 H 0.13 2.25 7.86 -52.48 -0.41 1.84 15 27 H 0.29 6.68 8.30 -40.82 -0.34 6.34 15 28 H 0.14 3.32 4.35 -52.48 -0.23 3.10 15 29 H 0.09 1.33 7.67 -52.49 -0.40 0.93 15 LS Contribution 264.94 15.07 3.99 3.99 Total: -1.00 -28.57 264.94 -6.50 -35.08 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -2.18 Total: -0.39 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -1.90 Total: -20.26 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.77 Total: -19.71 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.61 Total: -14.46 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.17 Total: 16.34 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.41 Total: -0.58 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.57 -6.50 -35.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396354130.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.256 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds