Wall clock time and date at job start Mon Mar 30 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35568 * 116.99660 * 2 1 4 4 C 1.38829 * 120.10672 * 0.02562 * 3 2 1 5 5 C 1.37395 * 120.47250 * 179.97438 * 4 3 2 6 6 C 1.40720 * 120.88520 * 0.04166 * 5 4 3 7 7 C 1.46729 * 129.35116 * 179.97438 * 6 5 4 8 8 C 1.40769 * 123.29497 * 359.97139 * 7 6 5 9 9 H 1.07998 * 120.00060 * 337.30503 * 8 7 6 10 10 C 1.39765 * 119.99770 * 157.30565 * 8 7 6 11 11 N 1.31042 * 119.99831 * 160.59312 * 10 8 7 12 12 Si 1.86803 * 120.00196 * 340.59103 * 10 8 7 13 13 H 1.48495 * 109.46990 * 94.05646 * 12 10 8 14 14 H 1.48495 * 109.46938 * 214.05740 * 12 10 8 15 15 H 1.48501 * 109.46931 * 334.05611 * 12 10 8 16 16 C 1.36412 * 113.40886 * 179.97438 * 7 6 5 17 17 S 1.69984 * 111.92068 * 359.73440 * 16 7 6 18 18 C 1.39119 * 119.45017 * 359.95525 * 6 5 4 19 19 C 1.40148 * 120.09505 * 180.02562 * 3 2 1 20 20 C 1.46316 * 120.07873 * 359.97438 * 19 3 2 21 21 O 1.21371 * 119.99753 * 0.02785 * 20 19 3 22 22 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46822 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.47137 * 59.99893 * 1 2 3 25 25 H 1.08010 * 119.76044 * 359.97382 * 4 3 2 26 26 H 1.08004 * 119.55694 * 179.97438 * 5 4 3 27 27 H 0.96996 * 119.99737 * 180.02562 * 11 10 8 28 28 H 1.08004 * 124.04079 * 179.97438 * 16 7 6 29 29 H 1.08002 * 120.00415 * 180.02562 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2080 0.0000 4 6 1.2904 2.3736 0.0005 5 6 1.9063 3.6018 0.0011 6 6 3.3096 3.7062 0.0002 7 6 4.1532 4.9067 0.0001 8 6 3.6348 6.2155 0.0002 9 1 2.6337 6.3998 -0.3604 10 6 4.4158 7.2764 0.4671 11 7 4.1167 8.5073 0.1318 12 14 5.8861 6.9396 1.5691 13 1 7.1138 6.8398 0.7397 14 1 6.0370 8.0482 2.5455 15 1 5.6761 5.6630 2.2982 16 6 5.4890 4.6304 -0.0003 17 16 5.7910 2.9576 0.0068 18 6 4.0816 2.5489 -0.0003 19 6 3.4439 1.2837 -0.0005 20 6 4.2445 0.0591 -0.0005 21 8 3.6968 -1.0240 -0.0006 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2119 2.3145 0.0005 26 1 1.3053 4.4992 0.0011 27 1 4.6589 9.2435 0.4555 28 1 6.2624 5.3843 -0.0009 29 1 5.3229 0.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396354130.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:43 Heat of formation + Delta-G solvation = -52.555058 kcal Electronic energy + Delta-G solvation = -16772.622978 eV Core-core repulsion = 13944.775890 eV Total energy + Delta-G solvation = -2827.847088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.41926 -39.37085 -39.12436 -36.34935 -34.35574 -32.53326 -30.23579 -28.19882 -27.90987 -25.42320 -23.88479 -22.72680 -21.05032 -19.49547 -18.67677 -18.16435 -17.15978 -16.97381 -16.76678 -16.69421 -15.87716 -15.44962 -15.14036 -14.92366 -14.65873 -14.23946 -14.12415 -13.84495 -13.39884 -12.98112 -12.66507 -12.60524 -12.41486 -12.10867 -11.73243 -11.53667 -11.29594 -11.06171 -10.60030 -10.33278 -9.03748 -8.97988 -8.68440 -6.46969 -0.41949 0.09066 0.83274 1.06533 1.28246 1.34966 1.49187 1.72609 1.78276 2.12681 2.33703 2.63314 3.16784 3.34629 3.79718 3.97158 4.04329 4.31747 4.41797 4.41902 4.43551 4.70522 4.76774 4.81885 4.97596 5.15989 5.26615 5.39661 5.58525 5.65541 6.22393 6.35984 6.43847 6.52623 6.74296 8.08596 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.006878 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.415587 B = 4070.197738 C = 4860.598930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.305 6.305 3 C 0.199 3.801 4 C -0.229 4.229 5 C 0.005 3.995 6 C -0.147 4.147 7 C 0.085 3.915 8 C -0.446 4.446 9 H 0.071 0.929 10 C 0.055 3.945 11 N -0.836 5.836 12 Si 0.965 3.035 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.249 1.249 16 C -0.486 4.486 17 S 0.136 5.864 18 C -0.067 4.067 19 C -0.235 4.235 20 C 0.390 3.610 21 O -0.485 6.485 22 H 0.120 0.880 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.170 0.830 26 H 0.138 0.862 27 H 0.296 0.704 28 H 0.132 0.868 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -10.731 1.298 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.217 6.217 3 C 0.149 3.851 4 C -0.251 4.251 5 C -0.015 4.015 6 C -0.157 4.157 7 C 0.076 3.924 8 C -0.477 4.477 9 H 0.089 0.911 10 C -0.162 4.162 11 N -0.462 5.462 12 Si 0.790 3.210 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.173 1.173 16 C -0.620 4.620 17 S 0.399 5.601 18 C -0.184 4.184 19 C -0.244 4.244 20 C 0.252 3.748 21 O -0.361 6.361 22 H 0.138 0.862 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.187 0.813 26 H 0.155 0.845 27 H 0.106 0.894 28 H 0.149 0.851 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.649 -11.917 1.291 12.276 hybrid contribution -0.869 1.992 0.231 2.186 sum -3.518 -9.924 1.523 10.639 Atomic orbital electron populations 1.23514 0.76157 1.05872 1.02858 1.86224 1.23585 1.25473 1.86377 1.19166 0.90924 0.85228 0.89746 1.21208 1.01564 0.90344 1.11960 1.21128 0.92135 0.98273 0.89950 1.19521 0.94752 0.92219 1.09164 1.17581 0.90438 0.92207 0.92223 1.18991 1.01768 0.89970 1.36973 0.91077 1.26709 0.99861 0.93985 0.95609 1.69786 1.38957 1.01084 1.36370 0.85429 0.77967 0.78744 0.78887 1.19451 1.20834 1.17297 1.23870 0.98955 0.99440 1.39752 1.81293 0.99665 0.99525 1.79604 1.22878 0.99304 0.94880 1.01365 1.19551 0.91864 0.93677 1.19303 1.23764 0.95336 0.85785 0.69932 1.90511 1.77227 1.31265 1.37094 0.86163 0.91052 0.91056 0.81288 0.84454 0.89391 0.85112 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 15 2 O -0.31 -9.11 8.52 -67.61 -0.58 -9.69 15 3 C 0.20 6.54 6.70 22.88 0.15 6.69 15 4 C -0.23 -6.82 8.99 22.21 0.20 -6.62 15 5 C 0.01 0.18 9.83 22.68 0.22 0.40 15 6 C -0.15 -6.35 6.02 -20.24 -0.12 -6.47 15 7 C 0.08 4.15 5.34 -20.87 -0.11 4.04 15 8 C -0.45 -23.56 9.57 23.26 0.22 -23.34 15 9 H 0.07 3.90 7.86 -2.91 -0.02 3.88 15 10 C 0.06 2.86 5.45 85.18 0.46 3.32 15 11 N -0.84 -43.98 13.94 21.81 0.30 -43.68 15 12 Si 0.96 42.54 24.56 68.60 1.68 44.23 15 13 H -0.27 -11.53 6.66 99.48 0.66 -10.87 15 14 H -0.28 -11.64 7.11 99.48 0.71 -10.93 15 15 H -0.25 -11.25 6.77 99.48 0.67 -10.58 15 16 C -0.49 -22.72 8.08 67.39 0.54 -22.17 15 17 S 0.14 5.19 22.37 -56.49 -1.26 3.93 15 18 C -0.07 -2.65 6.34 23.33 0.15 -2.50 15 19 C -0.24 -8.38 5.91 -19.86 -0.12 -8.50 15 20 C 0.39 12.69 11.28 69.92 0.79 13.48 15 21 O -0.48 -17.83 15.94 17.83 0.28 -17.54 15 22 H 0.12 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.07 1.09 7.65 -2.39 -0.02 1.07 15 24 H 0.07 1.09 7.66 -2.39 -0.02 1.07 15 25 H 0.17 3.60 6.27 -2.91 -0.02 3.58 15 26 H 0.14 4.69 7.86 -2.91 -0.02 4.67 15 27 H 0.30 14.02 8.30 -92.71 -0.77 13.25 15 28 H 0.13 6.25 4.35 -2.91 -0.01 6.24 15 29 H 0.12 3.19 7.67 -2.91 -0.02 3.17 15 Total: -1.00 -62.02 264.94 5.06 -56.97 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.12 Total: 6.18 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 3.51 Total: -40.39 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.30 Total: -43.68 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.29 Total: -27.23 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.68 Total: 44.23 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.26 Total: 3.93 kcal Total: -62.02 5.06 -56.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396354130.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.412 kcal (2) G-P(sol) polarization free energy of solvation -62.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds