Wall clock time and date at job start Mon Mar 30 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36105 * 116.99781 * 2 1 4 4 C 1.33255 * 122.16522 * 359.97438 * 3 2 1 5 5 S 1.75510 * 110.62748 * 179.97438 * 4 3 2 6 6 C 1.76011 * 91.55720 * 0.02562 * 5 4 3 7 7 C 1.39701 * 109.45134 * 0.02562 * 6 5 4 8 8 C 1.47881 * 118.05798 * 180.02562 * 7 6 5 9 9 C 1.40069 * 120.24373 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99964 * 333.12350 * 9 8 7 11 11 C 1.40375 * 120.00289 * 153.11971 * 9 8 7 12 12 N 1.30587 * 119.99382 * 343.45131 * 11 9 8 13 13 Si 1.86793 * 120.00002 * 163.44332 * 11 9 8 14 14 H 1.48504 * 109.47163 * 94.62878 * 13 11 9 15 15 H 1.48503 * 109.47135 * 214.62618 * 13 11 9 16 16 H 1.48504 * 109.47487 * 334.62857 * 13 11 9 17 17 C 1.40791 * 119.51526 * 359.97438 * 8 7 6 18 18 C 1.35819 * 120.53427 * 0.02562 * 17 8 7 19 19 C 1.40126 * 121.05786 * 0.21429 * 18 17 8 20 20 C 1.46512 * 119.50497 * 179.75508 * 19 18 17 21 21 O 1.21364 * 120.00380 * 179.78202 * 20 19 18 22 22 H 1.09005 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47172 * 299.99623 * 1 2 3 24 24 H 1.09003 * 109.47455 * 59.99632 * 1 2 3 25 25 H 1.07998 * 124.68569 * 359.97438 * 4 3 2 26 26 H 0.97010 * 119.99312 * 179.97438 * 12 11 9 27 27 H 1.07998 * 119.73179 * 179.97438 * 17 8 7 28 28 H 1.08002 * 119.47465 * 179.97438 * 18 17 8 29 29 H 1.08001 * 119.99866 * 359.77346 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2127 0.0000 4 6 1.3638 2.3569 -0.0005 5 16 2.4572 3.7298 0.0004 6 6 3.8633 2.6710 0.0007 7 6 3.4426 1.3389 -0.0005 8 6 4.4775 0.2826 0.0001 9 6 4.1070 -1.0682 -0.0016 10 1 3.1589 -1.3686 0.4197 11 6 4.9677 -2.0315 -0.5508 12 7 5.9430 -1.6631 -1.3371 13 14 4.7181 -3.8402 -0.1566 14 1 3.8968 -4.4702 -1.2215 15 1 6.0376 -4.5176 -0.0833 16 1 4.0214 -3.9710 1.1483 17 6 5.8381 0.6446 0.0013 18 6 6.2042 1.9525 0.0024 19 6 5.2430 2.9722 0.0069 20 6 5.6760 4.3719 0.0134 21 8 4.8512 5.2623 0.0133 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.2863 2.4294 -0.0013 26 1 6.5381 -2.3288 -1.7163 27 1 6.5969 -0.1240 0.0022 28 1 7.2528 2.2109 0.0037 29 1 6.7291 4.6114 0.0184 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396355160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:23 Heat of formation + Delta-G solvation = -38.896884 kcal Electronic energy + Delta-G solvation = -16986.851682 eV Core-core repulsion = 14159.596856 eV Total energy + Delta-G solvation = -2827.254825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.10160 -37.99590 -36.71343 -34.44836 -32.88605 -30.28590 -28.07006 -27.08145 -26.24222 -22.97684 -21.94658 -20.19697 -19.50708 -18.15027 -16.40913 -15.94960 -15.75546 -15.07849 -15.05211 -14.82064 -14.07428 -13.60371 -13.24240 -13.09866 -12.83506 -12.30480 -12.09361 -11.80137 -11.57189 -11.50133 -11.08862 -11.00259 -10.66375 -10.44741 -10.01787 -9.86392 -9.70745 -9.43888 -8.55852 -8.05961 -7.55185 -7.33549 -6.61842 -4.82194 1.81845 2.08537 2.69732 2.73831 2.78745 2.85962 3.17620 3.37261 3.52299 3.69160 4.13805 4.29524 5.26568 5.41496 5.53096 5.59134 5.73320 5.86178 6.01783 6.30874 6.46214 6.49782 6.65810 6.74217 6.91392 7.04732 7.34379 7.54811 7.63706 7.71840 8.06082 8.12014 8.32070 8.46753 8.60647 9.47170 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.008844 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.564363 B = 3165.397952 C = 4509.385226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.297 6.297 3 C 0.181 3.819 4 C -0.414 4.414 5 S 0.099 5.901 6 C -0.001 4.001 7 C -0.214 4.214 8 C 0.169 3.831 9 C -0.374 4.374 10 H 0.107 0.893 11 C 0.066 3.934 12 N -0.737 5.737 13 Si 0.924 3.076 14 H -0.262 1.262 15 H -0.268 1.268 16 H -0.252 1.252 17 C -0.201 4.201 18 C -0.014 4.014 19 C -0.323 4.323 20 C 0.372 3.628 21 O -0.515 6.515 22 H 0.089 0.911 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.146 0.854 26 H 0.296 0.704 27 H 0.124 0.876 28 H 0.103 0.897 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -2.653 1.325 3.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.210 6.210 3 C 0.126 3.874 4 C -0.547 4.547 5 S 0.360 5.640 6 C -0.118 4.118 7 C -0.221 4.221 8 C 0.163 3.837 9 C -0.399 4.399 10 H 0.124 0.876 11 C -0.161 4.161 12 N -0.357 5.357 13 Si 0.746 3.254 14 H -0.187 1.187 15 H -0.193 1.193 16 H -0.175 1.175 17 C -0.222 4.222 18 C -0.035 4.035 19 C -0.332 4.332 20 C 0.240 3.760 21 O -0.397 6.397 22 H 0.108 0.892 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.164 0.836 26 H 0.107 0.893 27 H 0.141 0.859 28 H 0.121 0.879 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.612 -0.975 1.158 3.019 hybrid contribution -0.056 -2.268 -0.059 2.270 sum -2.668 -3.244 1.099 4.341 Atomic orbital electron populations 1.22891 0.80498 1.02603 1.00610 1.86201 1.19342 1.26663 1.88809 1.17493 0.90708 0.83528 0.95658 1.24640 1.02597 0.96655 1.30833 1.83986 0.94106 1.06567 1.79329 1.22273 0.96415 0.94527 0.98577 1.18275 0.89743 0.92800 1.21308 1.18535 0.90139 0.90936 0.84100 1.20245 1.03073 0.91142 1.25417 0.87551 1.26428 0.93241 1.03693 0.92696 1.69731 1.10790 1.38565 1.16602 0.86000 0.79477 0.78979 0.80960 1.18666 1.19277 1.17490 1.20676 0.95581 0.95092 1.10811 1.20363 0.96523 0.92702 0.93924 1.19032 0.90338 0.94919 1.28951 1.23362 0.93283 0.87794 0.71603 1.90400 1.57641 1.50183 1.41509 0.89214 0.93529 0.93510 0.83599 0.89254 0.85869 0.87903 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.91 101.05 1.00 1.46 15 2 O -0.30 -6.26 8.36 -20.07 -0.17 -6.43 15 3 C 0.18 4.20 6.63 -40.61 -0.27 3.93 15 4 C -0.41 -8.83 9.99 28.99 0.29 -8.54 15 5 S 0.10 2.23 21.36 -107.50 -2.30 -0.06 15 6 C 0.00 -0.02 6.33 -37.90 -0.24 -0.26 15 7 C -0.21 -5.38 6.02 -104.69 -0.63 -6.01 15 8 C 0.17 4.23 5.73 -104.30 -0.60 3.63 15 9 C -0.37 -8.88 8.49 -38.09 -0.32 -9.20 15 10 H 0.11 2.49 6.30 -52.48 -0.33 2.16 15 11 C 0.07 1.41 5.14 -17.28 -0.09 1.32 15 12 N -0.74 -16.16 11.01 55.57 0.61 -15.55 15 13 Si 0.92 15.88 29.59 -169.99 -5.03 10.85 15 14 H -0.26 -4.48 7.11 56.52 0.40 -4.08 15 15 H -0.27 -4.43 7.11 56.52 0.40 -4.03 15 16 H -0.25 -4.34 7.11 56.52 0.40 -3.94 15 17 C -0.20 -4.71 8.56 -39.48 -0.34 -5.05 15 18 C -0.01 -0.31 9.62 -39.74 -0.38 -0.69 15 19 C -0.32 -7.43 5.90 -104.72 -0.62 -8.05 15 20 C 0.37 7.73 11.39 34.06 0.39 8.12 15 21 O -0.51 -12.03 15.72 5.48 0.09 -11.94 15 22 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15 23 H 0.05 0.66 7.82 -51.93 -0.41 0.25 15 24 H 0.05 0.67 7.82 -51.93 -0.41 0.26 15 25 H 0.15 2.68 6.90 -52.49 -0.36 2.32 15 26 H 0.30 5.69 8.29 -40.82 -0.34 5.36 15 27 H 0.12 2.83 6.24 -52.49 -0.33 2.50 15 28 H 0.10 1.84 8.06 -52.49 -0.42 1.41 15 29 H 0.07 1.20 8.06 -52.49 -0.42 0.77 15 LS Contribution 268.72 15.07 4.05 4.05 Total: -1.00 -27.95 268.72 -6.79 -34.74 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -2.23 Total: 3.69 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.81 Total: -19.34 kcal Atomic # 7 Polarization: -16.16 SS G_CDS: 0.61 Total: -15.55 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.08 Total: -18.38 kcal Atomic # 14 Polarization: 15.88 SS G_CDS: -5.03 Total: 10.85 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.30 Total: -0.06 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.95 -6.79 -34.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396355160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.155 kcal (2) G-P(sol) polarization free energy of solvation -27.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds