Wall clock time and date at job start Mon Mar 30 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36105 * 116.99781 * 2 1 4 4 C 1.33255 * 122.16522 * 359.97438 * 3 2 1 5 5 S 1.75510 * 110.62748 * 179.97438 * 4 3 2 6 6 C 1.76011 * 91.55720 * 0.02562 * 5 4 3 7 7 C 1.39701 * 109.45134 * 0.02562 * 6 5 4 8 8 C 1.47881 * 118.05798 * 180.02562 * 7 6 5 9 9 C 1.40069 * 120.24373 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99964 * 333.12350 * 9 8 7 11 11 C 1.40375 * 120.00289 * 153.11971 * 9 8 7 12 12 N 1.30587 * 119.99382 * 343.45131 * 11 9 8 13 13 Si 1.86793 * 120.00002 * 163.44332 * 11 9 8 14 14 H 1.48504 * 109.47163 * 94.62878 * 13 11 9 15 15 H 1.48503 * 109.47135 * 214.62618 * 13 11 9 16 16 H 1.48504 * 109.47487 * 334.62857 * 13 11 9 17 17 C 1.40791 * 119.51526 * 359.97438 * 8 7 6 18 18 C 1.35819 * 120.53427 * 0.02562 * 17 8 7 19 19 C 1.40126 * 121.05786 * 0.21429 * 18 17 8 20 20 C 1.46512 * 119.50497 * 179.75508 * 19 18 17 21 21 O 1.21364 * 120.00380 * 179.78202 * 20 19 18 22 22 H 1.09005 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47172 * 299.99623 * 1 2 3 24 24 H 1.09003 * 109.47455 * 59.99632 * 1 2 3 25 25 H 1.07998 * 124.68569 * 359.97438 * 4 3 2 26 26 H 0.97010 * 119.99312 * 179.97438 * 12 11 9 27 27 H 1.07998 * 119.73179 * 179.97438 * 17 8 7 28 28 H 1.08002 * 119.47465 * 179.97438 * 18 17 8 29 29 H 1.08001 * 119.99866 * 359.77346 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2127 0.0000 4 6 1.3638 2.3569 -0.0005 5 16 2.4572 3.7298 0.0004 6 6 3.8633 2.6710 0.0007 7 6 3.4426 1.3389 -0.0005 8 6 4.4775 0.2826 0.0001 9 6 4.1070 -1.0682 -0.0016 10 1 3.1589 -1.3686 0.4197 11 6 4.9677 -2.0315 -0.5508 12 7 5.9430 -1.6631 -1.3371 13 14 4.7181 -3.8402 -0.1566 14 1 3.8968 -4.4702 -1.2215 15 1 6.0376 -4.5176 -0.0833 16 1 4.0214 -3.9710 1.1483 17 6 5.8381 0.6446 0.0013 18 6 6.2042 1.9525 0.0024 19 6 5.2430 2.9722 0.0069 20 6 5.6760 4.3719 0.0134 21 8 4.8512 5.2623 0.0133 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.2863 2.4294 -0.0013 26 1 6.5381 -2.3288 -1.7163 27 1 6.5969 -0.1240 0.0022 28 1 7.2528 2.2109 0.0037 29 1 6.7291 4.6114 0.0184 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396355160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:22 Heat of formation + Delta-G solvation = -54.500165 kcal Electronic energy + Delta-G solvation = -16987.528291 eV Core-core repulsion = 14159.596856 eV Total energy + Delta-G solvation = -2827.931434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.74188 -39.66249 -38.39381 -36.11917 -34.55589 -32.01066 -29.78516 -28.40391 -27.95577 -24.65511 -23.62162 -21.88742 -21.16463 -19.85201 -18.07214 -17.58607 -17.37629 -16.64956 -16.53808 -16.43911 -15.73402 -15.14779 -14.95492 -14.76429 -14.39686 -13.92999 -13.72279 -13.33535 -13.24979 -12.94000 -12.58354 -12.46526 -12.22115 -11.96638 -11.67394 -11.54194 -11.38382 -11.08227 -10.23864 -9.80551 -9.26301 -8.99329 -8.35131 -6.58023 0.13097 0.32645 0.96376 1.33291 1.38036 1.44940 1.53912 1.69908 2.01043 2.10729 2.60777 2.69335 3.50442 3.90074 4.11424 4.34241 4.39481 4.41796 4.62541 4.71470 4.83558 4.86666 4.94684 5.05206 5.21693 5.33523 5.62741 5.80400 5.90731 5.98935 6.36950 6.44853 6.63594 6.74031 6.96944 7.89873 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.008844 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.564363 B = 3165.397952 C = 4509.385226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.318 6.318 3 C 0.165 3.835 4 C -0.406 4.406 5 S 0.096 5.904 6 C -0.032 4.032 7 C -0.248 4.248 8 C 0.139 3.861 9 C -0.395 4.395 10 H 0.100 0.900 11 C 0.034 3.966 12 N -0.760 5.760 13 Si 0.994 3.006 14 H -0.258 1.258 15 H -0.253 1.253 16 H -0.255 1.255 17 C -0.221 4.221 18 C -0.007 4.007 19 C -0.344 4.344 20 C 0.377 3.623 21 O -0.542 6.542 22 H 0.119 0.881 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.175 0.825 26 H 0.309 0.691 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -3.485 1.356 4.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.232 6.232 3 C 0.110 3.890 4 C -0.539 4.539 5 S 0.357 5.643 6 C -0.149 4.149 7 C -0.256 4.256 8 C 0.132 3.868 9 C -0.419 4.419 10 H 0.118 0.882 11 C -0.190 4.190 12 N -0.380 5.380 13 Si 0.812 3.188 14 H -0.182 1.182 15 H -0.177 1.177 16 H -0.178 1.178 17 C -0.241 4.241 18 C -0.028 4.028 19 C -0.353 4.353 20 C 0.247 3.753 21 O -0.426 6.426 22 H 0.137 0.863 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.192 0.808 26 H 0.121 0.879 27 H 0.140 0.860 28 H 0.161 0.839 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.375 -1.792 1.182 3.202 hybrid contribution -0.163 -1.988 -0.093 1.997 sum -2.539 -3.780 1.089 4.681 Atomic orbital electron populations 1.23256 0.77604 1.04984 1.01613 1.86162 1.22352 1.25932 1.88705 1.17589 0.90527 0.84695 0.96165 1.24892 1.03719 0.95586 1.29708 1.83822 0.94004 1.06972 1.79511 1.22715 0.97867 0.94966 0.99313 1.18724 0.91117 0.93367 1.22346 1.18934 0.91013 0.91722 0.85089 1.20421 1.03666 0.91589 1.26221 0.88199 1.27218 0.92513 1.07420 0.91898 1.69718 1.11181 1.40544 1.16590 0.84985 0.79956 0.73435 0.80399 1.18225 1.17663 1.17788 1.20768 0.95100 0.96031 1.12251 1.20718 0.98336 0.91706 0.92040 1.19555 0.90142 0.96728 1.28872 1.23937 0.95246 0.86279 0.69885 1.90392 1.59038 1.50593 1.42562 0.86289 0.92288 0.92586 0.80790 0.87910 0.85966 0.83911 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.91 113.37 1.12 1.71 15 2 O -0.32 -13.43 8.36 -94.74 -0.79 -14.22 15 3 C 0.17 7.75 6.63 21.61 0.14 7.89 15 4 C -0.41 -17.21 9.99 66.69 0.67 -16.54 15 5 S 0.10 4.35 21.36 -56.49 -1.21 3.15 15 6 C -0.03 -1.59 6.33 23.36 0.15 -1.44 15 7 C -0.25 -12.80 6.02 -19.91 -0.12 -12.92 15 8 C 0.14 7.12 5.73 -19.65 -0.11 7.00 15 9 C -0.40 -19.12 8.49 23.23 0.20 -18.92 15 10 H 0.10 4.81 6.30 -2.91 -0.02 4.79 15 11 C 0.03 1.44 5.14 85.40 0.44 1.88 15 12 N -0.76 -33.17 11.01 21.90 0.24 -32.92 15 13 Si 0.99 31.69 29.59 68.60 2.03 33.72 15 14 H -0.26 -8.01 7.11 99.48 0.71 -7.30 15 15 H -0.25 -7.39 7.11 99.48 0.71 -6.69 15 16 H -0.25 -8.14 7.11 99.48 0.71 -7.44 15 17 C -0.22 -10.46 8.56 22.33 0.19 -10.27 15 18 C -0.01 -0.32 9.62 22.17 0.21 -0.10 15 19 C -0.34 -15.65 5.90 -19.93 -0.12 -15.77 15 20 C 0.38 15.01 11.39 69.98 0.80 15.81 15 21 O -0.54 -24.79 15.72 -3.29 -0.05 -24.84 15 22 H 0.12 2.70 8.14 -2.38 -0.02 2.68 15 23 H 0.06 1.56 7.82 -2.39 -0.02 1.54 15 24 H 0.06 1.51 7.82 -2.39 -0.02 1.49 15 25 H 0.17 6.14 6.90 -2.91 -0.02 6.12 15 26 H 0.31 11.62 8.29 -92.70 -0.77 10.85 15 27 H 0.12 5.67 6.24 -2.91 -0.02 5.65 15 28 H 0.14 4.72 8.06 -2.91 -0.02 4.70 15 29 H 0.13 3.71 8.06 -2.91 -0.02 3.69 15 Total: -1.00 -61.69 268.72 4.98 -56.71 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.19 Total: 20.09 kcal Atomic # 6 Polarization: -45.25 SS G_CDS: 3.57 Total: -41.68 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.24 Total: -32.92 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.84 Total: -39.06 kcal Atomic # 14 Polarization: 31.69 SS G_CDS: 2.03 Total: 33.72 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.21 Total: 3.15 kcal Total: -61.69 4.98 -56.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396355160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.206 kcal (2) G-P(sol) polarization free energy of solvation -61.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds