Wall clock time and date at job start Mon Mar 30 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32789 * 122.05318 * 2 1 4 4 S 1.75488 * 110.75446 * 180.02562 * 3 2 1 5 5 C 1.76091 * 91.52089 * 0.02562 * 4 3 2 6 6 C 1.38735 * 130.44367 * 179.97438 * 5 4 3 7 7 C 1.40253 * 121.02738 * 179.97438 * 6 5 4 8 8 C 1.41121 * 119.79913 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99515 * 33.65002 * 8 7 6 10 10 C 1.39864 * 120.00073 * 213.65078 * 8 7 6 11 11 N 1.30890 * 120.00146 * 0.55112 * 10 8 7 12 12 Si 1.86801 * 120.00018 * 180.54764 * 10 8 7 13 13 H 1.48501 * 109.47092 * 60.00301 * 12 10 8 14 14 H 1.48497 * 109.47115 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47225 * 300.00068 * 12 10 8 16 16 C 1.40777 * 120.40596 * 359.68981 * 7 6 5 17 17 C 1.38032 * 120.04103 * 0.60999 * 16 7 6 18 18 C 1.47366 * 120.12944 * 179.68678 * 17 16 7 19 19 O 1.21519 * 119.99696 * 128.90347 * 18 17 16 20 20 O 1.34772 * 120.00191 * 308.89502 * 18 17 16 21 21 C 1.39910 * 122.05084 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46638 * 263.25559 * 1 2 3 23 23 H 1.09001 * 109.47046 * 23.25729 * 1 2 3 24 24 H 1.08997 * 109.46682 * 143.25890 * 1 2 3 25 25 H 1.07994 * 124.62116 * 0.02562 * 3 2 1 26 26 H 1.08004 * 119.48438 * 359.97438 * 6 5 4 27 27 H 0.97001 * 119.99987 * 179.97438 * 11 10 8 28 28 H 1.08005 * 119.97808 * 180.31994 * 16 7 6 29 29 H 0.96698 * 117.00197 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2117 1.1255 0.0000 4 16 3.9326 0.7816 -0.0007 5 6 3.6335 -0.9537 -0.0018 6 6 4.5212 -2.0199 -0.0033 7 6 4.0601 -3.3445 -0.0034 8 6 4.9861 -4.4094 -0.0054 9 1 5.9287 -4.3063 0.5115 10 6 4.6830 -5.5983 -0.6769 11 7 3.5452 -5.7193 -1.3125 12 14 5.9022 -7.0136 -0.6667 13 1 6.1484 -7.4448 0.7328 14 1 5.3472 -8.1506 -1.4440 15 1 7.1799 -6.5707 -1.2803 16 6 2.6792 -3.6182 0.0045 17 6 1.7690 -2.5805 -0.0002 18 6 0.3231 -2.8649 0.0011 19 8 -0.4006 -2.3298 0.8177 20 8 -0.1968 -3.7181 -0.9034 21 6 2.2495 -1.1858 -0.0005 22 1 -0.3633 -0.1207 1.0206 23 1 -0.3633 0.9442 -0.4058 24 1 -0.3632 -0.8235 -0.6147 25 1 1.7841 2.1171 0.0004 26 1 5.5839 -1.8269 -0.0043 27 1 3.3352 -6.5437 -1.7785 28 1 2.3318 -4.6408 0.0096 29 1 0.4182 -4.1194 -1.5325 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396355569.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:19 Heat of formation + Delta-G solvation = -59.354153 kcal Electronic energy + Delta-G solvation = -17052.800734 eV Core-core repulsion = 14224.658815 eV Total energy + Delta-G solvation = -2828.141919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68911 -37.84447 -36.05679 -35.45056 -33.27555 -30.39173 -29.55709 -27.14589 -25.52285 -23.45923 -21.90628 -20.79371 -18.79165 -18.72893 -16.86348 -16.11601 -15.55096 -15.40163 -15.01814 -14.57140 -14.07803 -13.61936 -13.48083 -12.96965 -12.56798 -12.33924 -12.02481 -11.94195 -11.54104 -11.37181 -11.11718 -11.07005 -10.68480 -10.50553 -10.28589 -10.05245 -10.00960 -9.46453 -9.32493 -8.60068 -7.50520 -7.19101 -6.89727 -4.77380 1.39229 2.19751 2.43292 2.79235 2.81913 2.88351 2.90431 3.05142 3.27592 3.66127 4.00233 4.25685 5.03166 5.19500 5.52115 5.69378 5.96183 6.11872 6.22311 6.34585 6.45850 6.50414 6.72106 6.78969 6.83062 6.96227 7.30682 7.38040 7.45583 7.62479 7.85825 8.06318 8.22919 8.33749 8.42932 9.79289 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.007782 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.716128 B = 3597.012872 C = 4773.323311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.045 4.045 3 C -0.260 4.260 4 S 0.015 5.985 5 C -0.070 4.070 6 C -0.192 4.192 7 C 0.120 3.880 8 C -0.440 4.440 9 H 0.087 0.913 10 C 0.071 3.929 11 N -0.805 5.805 12 Si 0.925 3.075 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.262 1.262 16 C -0.076 4.076 17 C -0.140 4.140 18 C 0.546 3.454 19 O -0.475 6.475 20 O -0.517 6.517 21 C -0.148 4.148 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.149 0.851 26 H 0.105 0.895 27 H 0.289 0.711 28 H 0.143 0.857 29 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 2.000 -1.312 2.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.057 4.057 3 C -0.393 4.393 4 S 0.277 5.723 5 C -0.185 4.185 6 C -0.219 4.219 7 C 0.114 3.886 8 C -0.469 4.469 9 H 0.105 0.895 10 C -0.147 4.147 11 N -0.431 5.431 12 Si 0.749 3.251 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.187 1.187 16 C -0.096 4.096 17 C -0.144 4.144 18 C 0.388 3.612 19 O -0.362 6.362 20 O -0.328 6.328 21 C -0.154 4.154 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.167 0.833 26 H 0.123 0.877 27 H 0.100 0.900 28 H 0.160 0.840 29 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -0.131 3.205 -0.792 3.304 hybrid contribution -0.153 -1.643 -0.498 1.724 sum -0.284 1.562 -1.290 2.046 Atomic orbital electron populations 1.20749 0.90580 1.00782 1.02886 1.18553 0.96382 0.91515 0.99266 1.24444 0.95234 1.00838 1.18743 1.83612 1.06636 1.00435 1.81574 1.22156 0.96065 0.95422 1.04871 1.20354 0.96984 0.90552 1.13973 1.17319 0.91781 0.91380 0.88126 1.19638 1.03181 0.96443 1.27681 0.89459 1.25994 0.96143 0.99578 0.92983 1.69617 1.21614 1.27819 1.24019 0.86051 0.80463 0.78868 0.79703 1.18599 1.19986 1.18655 1.21752 0.93129 0.97533 0.97137 1.20826 0.91404 0.93041 1.09137 1.20487 0.87448 0.74894 0.78328 1.90802 1.63920 1.46469 1.35000 1.84396 1.45594 1.57688 1.45128 1.18170 0.91196 0.90832 1.15245 0.90383 0.93144 0.92125 0.83306 0.87692 0.90025 0.83984 0.72078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 8.18 36.01 0.29 -1.38 15 2 C -0.05 -0.93 5.81 -105.87 -0.62 -1.54 15 3 C -0.26 -4.85 10.80 28.86 0.31 -4.54 15 4 S 0.01 0.28 23.29 -107.50 -2.50 -2.22 15 5 C -0.07 -1.56 6.46 -38.61 -0.25 -1.81 15 6 C -0.19 -4.38 9.72 -38.64 -0.38 -4.76 15 7 C 0.12 2.81 5.52 -107.09 -0.59 2.22 15 8 C -0.44 -10.05 9.00 -37.88 -0.34 -10.39 15 9 H 0.09 1.91 7.84 -52.49 -0.41 1.50 15 10 C 0.07 1.51 5.37 -17.34 -0.09 1.42 15 11 N -0.81 -17.23 10.68 55.54 0.59 -16.63 15 12 Si 0.93 16.33 29.56 -169.99 -5.02 11.30 15 13 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 14 H -0.28 -4.76 7.11 56.52 0.40 -4.35 15 15 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 16 C -0.08 -1.70 8.05 -38.70 -0.31 -2.02 15 17 C -0.14 -3.06 5.81 -102.48 -0.60 -3.65 15 18 C 0.55 11.25 6.14 34.44 0.21 11.46 15 19 O -0.48 -10.65 14.25 -19.28 -0.27 -10.93 15 20 O -0.52 -9.09 13.48 -40.69 -0.55 -9.64 15 21 C -0.15 -3.32 6.01 -104.70 -0.63 -3.95 15 22 H 0.08 1.48 7.21 -51.93 -0.37 1.11 15 23 H 0.05 0.78 8.07 -51.93 -0.42 0.36 15 24 H 0.06 1.16 5.58 -51.93 -0.29 0.87 15 25 H 0.15 2.34 8.06 -52.49 -0.42 1.92 15 26 H 0.10 2.25 8.06 -52.48 -0.42 1.83 15 27 H 0.29 5.62 8.30 -40.82 -0.34 5.28 15 28 H 0.14 3.13 6.20 -52.48 -0.33 2.81 15 29 H 0.42 5.84 8.75 45.56 0.40 6.24 15 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -25.82 267.51 -8.11 -33.93 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -1.40 Total: 9.10 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.98 Total: -18.94 kcal Atomic # 7 Polarization: -17.23 SS G_CDS: 0.59 Total: -16.63 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.82 Total: -20.57 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.02 Total: 11.30 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.50 Total: -2.22 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.82 -8.11 -33.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396355569.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.423 kcal (2) G-P(sol) polarization free energy of solvation -25.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds