Wall clock time and date at job start Mon Mar 30 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32789 * 122.05318 * 2 1 4 4 S 1.75488 * 110.75446 * 180.02562 * 3 2 1 5 5 C 1.76091 * 91.52089 * 0.02562 * 4 3 2 6 6 C 1.38735 * 130.44367 * 179.97438 * 5 4 3 7 7 C 1.40253 * 121.02738 * 179.97438 * 6 5 4 8 8 C 1.41121 * 119.79913 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99515 * 33.65002 * 8 7 6 10 10 C 1.39864 * 120.00073 * 213.65078 * 8 7 6 11 11 N 1.30890 * 120.00146 * 0.55112 * 10 8 7 12 12 Si 1.86801 * 120.00018 * 180.54764 * 10 8 7 13 13 H 1.48501 * 109.47092 * 60.00301 * 12 10 8 14 14 H 1.48497 * 109.47115 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47225 * 300.00068 * 12 10 8 16 16 C 1.40777 * 120.40596 * 359.68981 * 7 6 5 17 17 C 1.38032 * 120.04103 * 0.60999 * 16 7 6 18 18 C 1.47366 * 120.12944 * 179.68678 * 17 16 7 19 19 O 1.21519 * 119.99696 * 128.90347 * 18 17 16 20 20 O 1.34772 * 120.00191 * 308.89502 * 18 17 16 21 21 C 1.39910 * 122.05084 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46638 * 263.25559 * 1 2 3 23 23 H 1.09001 * 109.47046 * 23.25729 * 1 2 3 24 24 H 1.08997 * 109.46682 * 143.25890 * 1 2 3 25 25 H 1.07994 * 124.62116 * 0.02562 * 3 2 1 26 26 H 1.08004 * 119.48438 * 359.97438 * 6 5 4 27 27 H 0.97001 * 119.99987 * 179.97438 * 11 10 8 28 28 H 1.08005 * 119.97808 * 180.31994 * 16 7 6 29 29 H 0.96698 * 117.00197 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2117 1.1255 0.0000 4 16 3.9326 0.7816 -0.0007 5 6 3.6335 -0.9537 -0.0018 6 6 4.5212 -2.0199 -0.0033 7 6 4.0601 -3.3445 -0.0034 8 6 4.9861 -4.4094 -0.0054 9 1 5.9287 -4.3063 0.5115 10 6 4.6830 -5.5983 -0.6769 11 7 3.5452 -5.7193 -1.3125 12 14 5.9022 -7.0136 -0.6667 13 1 6.1484 -7.4448 0.7328 14 1 5.3472 -8.1506 -1.4440 15 1 7.1799 -6.5707 -1.2803 16 6 2.6792 -3.6182 0.0045 17 6 1.7690 -2.5805 -0.0002 18 6 0.3231 -2.8649 0.0011 19 8 -0.4006 -2.3298 0.8177 20 8 -0.1968 -3.7181 -0.9034 21 6 2.2495 -1.1858 -0.0005 22 1 -0.3633 -0.1207 1.0206 23 1 -0.3633 0.9442 -0.4058 24 1 -0.3632 -0.8235 -0.6147 25 1 1.7841 2.1171 0.0004 26 1 5.5839 -1.8269 -0.0043 27 1 3.3352 -6.5437 -1.7785 28 1 2.3318 -4.6408 0.0096 29 1 0.4182 -4.1194 -1.5325 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396355569.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:19 Heat of formation + Delta-G solvation = -72.476058 kcal Electronic energy + Delta-G solvation = -17053.369742 eV Core-core repulsion = 14224.658815 eV Total energy + Delta-G solvation = -2828.710927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30836 -39.46346 -37.65180 -37.04838 -34.89648 -32.07265 -31.18775 -28.65655 -27.17809 -25.10437 -23.55731 -22.39732 -20.38058 -20.33345 -18.53331 -17.71403 -17.13453 -17.00379 -16.60484 -16.19255 -15.64701 -15.17217 -15.03065 -14.55463 -14.10374 -13.89839 -13.63054 -13.46907 -13.07203 -12.85660 -12.71064 -12.63859 -12.28136 -12.01246 -11.83355 -11.65619 -11.59756 -11.07693 -10.96027 -10.25864 -9.17147 -8.79240 -8.48596 -6.48033 -0.23922 0.49968 0.84073 1.25156 1.34106 1.41132 1.44213 1.53938 1.70754 2.19125 2.44111 2.61890 3.32840 3.65736 4.00313 4.17327 4.45657 4.63814 4.67531 4.77795 4.79852 4.97942 5.11007 5.14957 5.20041 5.31956 5.67396 5.75201 5.79347 5.92159 6.32599 6.36071 6.63530 6.71986 6.74791 8.21088 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.007782 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.716128 B = 3597.012872 C = 4773.323311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.074 4.074 3 C -0.241 4.241 4 S 0.052 5.948 5 C -0.099 4.099 6 C -0.208 4.208 7 C 0.094 3.906 8 C -0.470 4.470 9 H 0.086 0.914 10 C 0.039 3.961 11 N -0.821 5.821 12 Si 0.990 3.010 13 H -0.261 1.261 14 H -0.266 1.266 15 H -0.263 1.263 16 C -0.082 4.082 17 C -0.146 4.146 18 C 0.555 3.445 19 O -0.496 6.496 20 O -0.506 6.506 21 C -0.164 4.164 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.047 0.953 25 H 0.186 0.814 26 H 0.107 0.893 27 H 0.298 0.702 28 H 0.141 0.859 29 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 2.561 -1.764 3.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.374 4.374 4 S 0.315 5.685 5 C -0.214 4.214 6 C -0.234 4.234 7 C 0.089 3.911 8 C -0.499 4.499 9 H 0.104 0.896 10 C -0.178 4.178 11 N -0.447 5.447 12 Si 0.810 3.190 13 H -0.186 1.186 14 H -0.190 1.190 15 H -0.187 1.187 16 C -0.101 4.101 17 C -0.150 4.150 18 C 0.397 3.603 19 O -0.384 6.384 20 O -0.319 6.319 21 C -0.171 4.171 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.066 0.934 25 H 0.203 0.797 26 H 0.125 0.875 27 H 0.109 0.891 28 H 0.159 0.841 29 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -0.226 3.763 -1.265 3.977 hybrid contribution -0.146 -1.699 -0.386 1.748 sum -0.372 2.065 -1.651 2.670 Atomic orbital electron populations 1.20666 0.89258 1.01945 1.02236 1.18766 0.97534 0.91263 1.00997 1.24962 0.94955 1.01993 1.15499 1.83447 1.06820 0.97511 1.80703 1.22481 0.96252 0.97435 1.05262 1.20458 0.97299 0.90889 1.14783 1.17619 0.92507 0.92054 0.88938 1.19845 1.03441 0.97549 1.29090 0.89559 1.26706 0.97730 1.01133 0.92182 1.69627 1.22503 1.28717 1.23810 0.85095 0.78200 0.76068 0.79591 1.18566 1.18976 1.18713 1.21708 0.93009 0.97595 0.97804 1.20990 0.92055 0.93115 1.08880 1.20267 0.86726 0.74874 0.78391 1.90787 1.64061 1.47525 1.36048 1.84366 1.45791 1.56870 1.44857 1.18608 0.91767 0.91794 1.14954 0.91367 0.90028 0.93427 0.79694 0.87490 0.89120 0.84146 0.70254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.88 8.18 71.24 0.58 -2.29 15 2 C -0.07 -2.90 5.81 -20.64 -0.12 -3.02 15 3 C -0.24 -8.29 10.80 66.64 0.72 -7.57 15 4 S 0.05 1.89 23.29 -56.49 -1.32 0.57 15 5 C -0.10 -4.42 6.46 22.90 0.15 -4.27 15 6 C -0.21 -9.70 9.72 22.88 0.22 -9.48 15 7 C 0.09 4.55 5.52 -21.46 -0.12 4.43 15 8 C -0.47 -21.95 9.00 23.37 0.21 -21.74 15 9 H 0.09 3.88 7.84 -2.91 -0.02 3.86 15 10 C 0.04 1.64 5.37 85.23 0.46 2.10 15 11 N -0.82 -35.07 10.68 21.81 0.23 -34.84 15 12 Si 0.99 32.97 29.56 68.60 2.03 35.00 15 13 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 14 H -0.27 -8.36 7.11 99.48 0.71 -7.65 15 15 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 16 C -0.08 -3.74 8.05 22.84 0.18 -3.55 15 17 C -0.15 -6.46 5.81 -18.48 -0.11 -6.57 15 18 C 0.55 22.76 6.14 70.22 0.43 23.19 15 19 O -0.50 -22.13 14.25 19.77 0.28 -21.85 15 20 O -0.51 -17.43 13.48 -56.83 -0.77 -18.20 15 21 C -0.16 -7.33 6.01 -19.92 -0.12 -7.45 15 22 H 0.07 2.51 7.21 -2.39 -0.02 2.49 15 23 H 0.08 2.28 8.07 -2.39 -0.02 2.26 15 24 H 0.05 1.77 5.58 -2.39 -0.01 1.76 15 25 H 0.19 4.95 8.06 -2.91 -0.02 4.92 15 26 H 0.11 4.73 8.06 -2.91 -0.02 4.71 15 27 H 0.30 11.38 8.30 -92.71 -0.77 10.61 15 28 H 0.14 6.33 6.20 -2.91 -0.02 6.32 15 29 H 0.44 11.83 8.75 -74.06 -0.65 11.18 15 Total: -1.00 -54.54 267.51 3.52 -51.02 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.57 Total: 24.52 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 2.49 Total: -36.22 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.23 Total: -34.84 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.48 Total: -40.05 kcal Atomic # 14 Polarization: 32.97 SS G_CDS: 2.03 Total: 35.00 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.57 kcal Total: -54.54 3.52 -51.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396355569.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.457 kcal (2) G-P(sol) polarization free energy of solvation -54.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds