Wall clock time and date at job start Mon Mar 30 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35494 * 117.00227 * 2 1 4 4 C 1.38172 * 119.67817 * 0.02562 * 3 2 1 5 5 C 1.37856 * 120.71215 * 179.97438 * 4 3 2 6 6 C 1.39883 * 120.12032 * 0.27796 * 5 4 3 7 7 C 1.46362 * 119.93939 * 179.69969 * 6 5 4 8 8 O 1.21356 * 120.00560 * 180.02562 * 7 6 5 9 9 C 1.41417 * 120.12801 * 359.44929 * 6 5 4 10 10 S 1.75985 * 130.25489 * 180.21388 * 9 6 5 11 11 C 1.75468 * 91.76116 * 180.30548 * 10 9 6 12 12 C 1.39877 * 124.85209 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00055 * 180.02562 * 12 11 10 14 14 C 1.40145 * 120.00084 * 0.02562 * 12 11 10 15 15 N 1.30804 * 119.99739 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00281 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46780 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46920 * 119.99890 * 16 14 12 19 19 H 1.48497 * 109.47294 * 240.00038 * 16 14 12 20 20 C 1.36965 * 110.29436 * 0.02562 * 11 10 9 21 21 C 1.39710 * 115.04564 * 0.02562 * 20 11 10 22 22 H 1.08996 * 109.46946 * 59.99588 * 1 2 3 23 23 H 1.09001 * 109.46819 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46611 * 299.99453 * 1 2 3 25 25 H 1.07999 * 119.64715 * 359.95036 * 4 3 2 26 26 H 1.08002 * 119.93635 * 179.97438 * 5 4 3 27 27 H 1.08005 * 119.99578 * 359.97438 * 7 6 5 28 28 H 0.97000 * 119.99845 * 179.97438 * 15 14 12 29 29 H 1.08000 * 122.47121 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 1.2852 2.3618 0.0005 5 6 1.8888 3.6012 0.0011 6 6 3.2840 3.7025 -0.0048 7 6 3.9207 5.0204 -0.0108 8 8 5.1309 5.1096 -0.0164 9 6 4.0805 2.5340 0.0005 10 16 5.8308 2.3509 0.0003 11 6 5.7019 0.6009 -0.0004 12 6 6.7880 -0.2806 -0.0013 13 1 6.6179 -1.3470 -0.0021 14 6 8.0969 0.2202 -0.0012 15 7 8.3029 1.5119 -0.0007 16 14 9.5474 -0.9570 -0.0017 17 1 9.0494 -2.3560 -0.0028 18 1 10.3728 -0.7249 -1.2142 19 1 10.3729 -0.7258 1.2108 20 6 4.3859 0.2215 -0.0010 21 6 3.4669 1.2739 -0.0016 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 0.2074 2.2927 0.0001 26 1 1.2834 4.4956 0.0011 27 1 3.3133 5.9135 -0.0112 28 1 9.2089 1.8585 -0.0003 29 1 4.0811 -0.8146 -0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396356389.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:04 Heat of formation + Delta-G solvation = -49.824226 kcal Electronic energy + Delta-G solvation = -16672.067819 eV Core-core repulsion = 13844.339148 eV Total energy + Delta-G solvation = -2827.728670 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.41924 -38.21072 -36.51818 -34.83996 -33.18492 -29.60543 -29.21427 -27.20432 -25.36004 -23.52156 -22.24219 -20.27641 -19.29227 -18.09855 -17.08728 -16.03106 -15.51081 -15.24954 -15.22742 -14.42940 -14.28601 -13.75312 -13.55883 -13.37601 -12.56096 -12.26168 -12.19731 -11.86917 -11.64046 -11.48036 -11.26389 -10.85996 -10.63781 -10.42065 -10.23524 -10.01120 -9.41550 -9.31218 -8.70221 -8.08180 -7.38872 -7.13493 -6.39139 -4.60603 1.39925 2.18135 2.72611 2.88184 2.96072 3.08974 3.25598 3.62333 3.69548 3.76111 4.06697 4.59002 4.96849 5.01601 5.31856 5.42773 5.50469 5.60731 5.71684 5.97805 6.19064 6.49471 6.69363 6.75815 6.92704 7.05737 7.26578 7.46900 7.48584 7.70561 7.93888 8.16158 8.17073 8.31806 8.46730 9.70916 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.007474 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.164586 B = 3745.318950 C = 5017.329724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.312 6.312 3 C 0.125 3.875 4 C -0.225 4.225 5 C -0.098 4.098 6 C -0.170 4.170 7 C 0.371 3.629 8 O -0.461 6.461 9 C -0.200 4.200 10 S 0.218 5.782 11 C 0.023 3.977 12 C -0.381 4.381 13 H 0.098 0.902 14 C 0.051 3.949 15 N -0.777 5.777 16 Si 0.939 3.061 17 H -0.256 1.256 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.346 4.346 21 C -0.012 4.012 22 H 0.049 0.951 23 H 0.090 0.910 24 H 0.049 0.951 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.302 0.698 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 1.238 0.011 7.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.078 3.922 4 C -0.247 4.247 5 C -0.118 4.118 6 C -0.176 4.176 7 C 0.231 3.769 8 O -0.336 6.336 9 C -0.316 4.316 10 S 0.481 5.519 11 C -0.096 4.096 12 C -0.415 4.415 13 H 0.116 0.884 14 C -0.170 4.170 15 N -0.404 5.404 16 Si 0.762 3.238 17 H -0.179 1.179 18 H -0.193 1.193 19 H -0.192 1.192 20 C -0.371 4.371 21 C -0.021 4.021 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.169 2.206 0.007 5.620 hybrid contribution -1.254 -1.375 -0.001 1.861 sum -6.422 0.831 0.006 6.476 Atomic orbital electron populations 1.22924 0.80036 1.02863 1.00747 1.85981 1.19877 1.28125 1.88498 1.19302 0.90824 0.83354 0.98688 1.20453 0.98407 0.92364 1.13437 1.20464 0.92586 0.96253 1.02521 1.19876 0.93319 0.93554 1.10837 1.23741 0.89804 0.91913 0.71436 1.90524 1.17740 1.89792 1.35521 1.23951 1.03604 0.94081 1.09995 1.85603 0.91415 0.99937 1.74960 1.21795 0.95514 0.97220 0.95101 1.19312 0.88843 0.95352 1.37947 0.88406 1.26338 1.01897 0.96218 0.92542 1.68595 1.25486 1.13295 1.32978 0.85712 0.78713 0.80375 0.79042 1.17916 1.19251 1.19247 1.19471 0.90397 0.97122 1.30084 1.17344 0.89229 0.93148 1.02369 0.93262 0.89131 0.93254 0.86721 0.86629 0.89664 0.88480 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.79 101.05 0.99 1.39 15 2 O -0.31 -6.16 10.33 -18.17 -0.19 -6.35 15 3 C 0.13 2.72 6.78 -37.99 -0.26 2.46 15 4 C -0.23 -4.13 8.96 -39.75 -0.36 -4.49 15 5 C -0.10 -1.74 9.76 -39.11 -0.38 -2.12 15 6 C -0.17 -3.55 5.89 -104.80 -0.62 -4.17 15 7 C 0.37 6.93 11.41 34.00 0.39 7.31 15 8 O -0.46 -10.33 15.74 5.49 0.09 -10.25 15 9 C -0.20 -4.94 6.34 -37.65 -0.24 -5.18 15 10 S 0.22 5.70 18.21 -107.50 -1.96 3.74 15 11 C 0.02 0.62 6.11 -39.43 -0.24 0.38 15 12 C -0.38 -9.71 9.26 -38.25 -0.35 -10.06 15 13 H 0.10 2.36 7.85 -52.49 -0.41 1.95 15 14 C 0.05 1.20 5.50 -17.27 -0.09 1.10 15 15 N -0.78 -18.97 10.58 55.56 0.59 -18.38 15 16 Si 0.94 17.44 29.56 -169.99 -5.03 12.41 15 17 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 18 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 19 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 20 C -0.35 -9.15 9.97 -39.49 -0.39 -9.54 15 21 C -0.01 -0.30 5.86 -107.01 -0.63 -0.93 15 22 H 0.05 0.59 7.63 -51.93 -0.40 0.20 15 23 H 0.09 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.05 0.60 7.63 -51.93 -0.40 0.20 15 25 H 0.11 1.69 6.18 -52.49 -0.32 1.37 15 26 H 0.12 1.57 8.06 -52.49 -0.42 1.14 15 27 H 0.09 1.15 8.06 -52.48 -0.42 0.73 15 28 H 0.30 6.59 8.30 -40.82 -0.34 6.25 15 29 H 0.11 2.82 8.06 -52.49 -0.42 2.40 15 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -30.06 271.28 -6.95 -37.01 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -2.35 Total: 1.57 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -2.19 Total: -23.85 kcal Atomic # 7 Polarization: -18.97 SS G_CDS: 0.59 Total: -18.38 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.10 Total: -16.59 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.96 Total: 3.74 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.06 -6.95 -37.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396356389.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.815 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds