Wall clock time and date at job start Mon Mar 30 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35494 * 117.00227 * 2 1 4 4 C 1.38172 * 119.67817 * 0.02562 * 3 2 1 5 5 C 1.37856 * 120.71215 * 179.97438 * 4 3 2 6 6 C 1.39883 * 120.12032 * 0.27796 * 5 4 3 7 7 C 1.46362 * 119.93939 * 179.69969 * 6 5 4 8 8 O 1.21356 * 120.00560 * 180.02562 * 7 6 5 9 9 C 1.41417 * 120.12801 * 359.44929 * 6 5 4 10 10 S 1.75985 * 130.25489 * 180.21388 * 9 6 5 11 11 C 1.75468 * 91.76116 * 180.30548 * 10 9 6 12 12 C 1.39877 * 124.85209 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00055 * 180.02562 * 12 11 10 14 14 C 1.40145 * 120.00084 * 0.02562 * 12 11 10 15 15 N 1.30804 * 119.99739 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00281 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46780 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46920 * 119.99890 * 16 14 12 19 19 H 1.48497 * 109.47294 * 240.00038 * 16 14 12 20 20 C 1.36965 * 110.29436 * 0.02562 * 11 10 9 21 21 C 1.39710 * 115.04564 * 0.02562 * 20 11 10 22 22 H 1.08996 * 109.46946 * 59.99588 * 1 2 3 23 23 H 1.09001 * 109.46819 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46611 * 299.99453 * 1 2 3 25 25 H 1.07999 * 119.64715 * 359.95036 * 4 3 2 26 26 H 1.08002 * 119.93635 * 179.97438 * 5 4 3 27 27 H 1.08005 * 119.99578 * 359.97438 * 7 6 5 28 28 H 0.97000 * 119.99845 * 179.97438 * 15 14 12 29 29 H 1.08000 * 122.47121 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 1.2852 2.3618 0.0005 5 6 1.8888 3.6012 0.0011 6 6 3.2840 3.7025 -0.0048 7 6 3.9207 5.0204 -0.0108 8 8 5.1309 5.1096 -0.0164 9 6 4.0805 2.5340 0.0005 10 16 5.8308 2.3509 0.0003 11 6 5.7019 0.6009 -0.0004 12 6 6.7880 -0.2806 -0.0013 13 1 6.6179 -1.3470 -0.0021 14 6 8.0969 0.2202 -0.0012 15 7 8.3029 1.5119 -0.0007 16 14 9.5474 -0.9570 -0.0017 17 1 9.0494 -2.3560 -0.0028 18 1 10.3728 -0.7249 -1.2142 19 1 10.3729 -0.7258 1.2108 20 6 4.3859 0.2215 -0.0010 21 6 3.4669 1.2739 -0.0016 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 0.2074 2.2927 0.0001 26 1 1.2834 4.4956 0.0011 27 1 3.3133 5.9135 -0.0112 28 1 9.2089 1.8585 -0.0003 29 1 4.0811 -0.8146 -0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396356389.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:04 Heat of formation + Delta-G solvation = -68.878851 kcal Electronic energy + Delta-G solvation = -16672.894089 eV Core-core repulsion = 13844.339148 eV Total energy + Delta-G solvation = -2828.554941 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97300 -39.73257 -38.14761 -36.59957 -34.91535 -31.17860 -30.94829 -28.46334 -27.12715 -25.03734 -23.92728 -21.87488 -21.04399 -19.78703 -18.72071 -17.61539 -17.09602 -16.84265 -16.56076 -16.02453 -15.83102 -15.42164 -15.14357 -14.99582 -14.11963 -13.93082 -13.59146 -13.42101 -13.16910 -13.10212 -13.01550 -12.30271 -12.20885 -11.99619 -11.75197 -11.65358 -11.10640 -11.07925 -10.37597 -9.78072 -9.19112 -8.88938 -8.24838 -6.51074 -0.15956 0.47447 1.17256 1.32545 1.41050 1.53405 1.57444 1.91098 2.01549 2.13095 2.59382 2.87482 3.20666 3.63826 4.09061 4.12799 4.38653 4.45010 4.59235 4.70152 4.72774 4.81985 4.91939 5.10237 5.34503 5.44243 5.48708 5.66309 5.82573 5.93397 6.06827 6.39367 6.55572 6.72917 6.75687 7.98651 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.007474 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.164586 B = 3745.318950 C = 5017.329724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.123 3.877 4 C -0.221 4.221 5 C -0.057 4.057 6 C -0.202 4.202 7 C 0.377 3.623 8 O -0.507 6.507 9 C -0.218 4.218 10 S 0.173 5.827 11 C -0.005 4.005 12 C -0.421 4.421 13 H 0.096 0.904 14 C 0.015 3.985 15 N -0.807 5.807 16 Si 1.015 2.985 17 H -0.253 1.253 18 H -0.257 1.257 19 H -0.257 1.257 20 C -0.376 4.376 21 C -0.054 4.054 22 H 0.068 0.932 23 H 0.114 0.886 24 H 0.069 0.931 25 H 0.164 0.836 26 H 0.180 0.820 27 H 0.161 0.839 28 H 0.310 0.690 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 2.779 0.012 10.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.075 3.925 4 C -0.242 4.242 5 C -0.077 4.077 6 C -0.209 4.209 7 C 0.240 3.760 8 O -0.385 6.385 9 C -0.334 4.334 10 S 0.435 5.565 11 C -0.123 4.123 12 C -0.455 4.455 13 H 0.114 0.886 14 C -0.203 4.203 15 N -0.434 5.434 16 Si 0.833 3.167 17 H -0.176 1.176 18 H -0.181 1.181 19 H -0.181 1.181 20 C -0.401 4.401 21 C -0.062 4.062 22 H 0.087 0.913 23 H 0.132 0.868 24 H 0.087 0.913 25 H 0.181 0.819 26 H 0.197 0.803 27 H 0.177 0.823 28 H 0.124 0.876 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.024 3.753 0.009 8.858 hybrid contribution -0.810 -1.760 -0.001 1.937 sum -8.834 1.994 0.008 9.056 Atomic orbital electron populations 1.23366 0.76470 1.05286 1.02509 1.85951 1.23541 1.27785 1.88129 1.19523 0.89927 0.85372 0.97656 1.21050 1.00650 0.91176 1.11295 1.21228 0.91441 0.98401 0.96631 1.20513 0.94867 0.93658 1.11818 1.24604 0.89476 0.92812 0.69107 1.90532 1.20167 1.90156 1.37643 1.24171 1.02534 0.95783 1.10945 1.85386 0.94477 1.00083 1.76570 1.22086 0.96236 0.97820 0.96195 1.19575 0.90103 0.95286 1.40494 0.88559 1.27335 1.03957 0.97917 0.91066 1.68691 1.26600 1.14971 1.33163 0.84637 0.74700 0.77775 0.79611 1.17649 1.18122 1.18108 1.19544 0.91162 0.97043 1.32377 1.17621 0.91346 0.92880 1.04403 0.91303 0.86782 0.91293 0.81907 0.80294 0.82312 0.87604 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.79 113.37 1.11 1.52 15 2 O -0.34 -13.10 10.33 -87.95 -0.91 -14.01 15 3 C 0.12 5.17 6.78 23.30 0.16 5.33 15 4 C -0.22 -7.03 8.96 22.16 0.20 -6.83 15 5 C -0.06 -1.71 9.76 22.58 0.22 -1.49 15 6 C -0.20 -7.99 5.89 -19.98 -0.12 -8.11 15 7 C 0.38 12.96 11.41 69.94 0.80 13.76 15 8 O -0.51 -22.64 15.74 -3.27 -0.05 -22.69 15 9 C -0.22 -11.05 6.34 23.52 0.15 -10.91 15 10 S 0.17 9.64 18.21 -56.49 -1.03 8.61 15 11 C 0.00 -0.27 6.11 22.37 0.14 -0.14 15 12 C -0.42 -23.17 9.26 23.13 0.21 -22.96 15 13 H 0.10 5.06 7.85 -2.91 -0.02 5.04 15 14 C 0.01 0.72 5.50 85.31 0.47 1.19 15 15 N -0.81 -41.60 10.58 21.87 0.23 -41.37 15 16 Si 1.02 36.79 29.56 68.60 2.03 38.81 15 17 H -0.25 -8.94 7.11 99.48 0.71 -8.24 15 18 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 19 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 20 C -0.38 -21.50 9.97 22.33 0.22 -21.28 15 21 C -0.05 -2.81 5.86 -21.41 -0.13 -2.93 15 22 H 0.07 1.34 7.63 -2.39 -0.02 1.32 15 23 H 0.11 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.07 1.34 7.63 -2.39 -0.02 1.32 15 25 H 0.16 3.63 6.18 -2.91 -0.02 3.61 15 26 H 0.18 3.18 8.06 -2.91 -0.02 3.15 15 27 H 0.16 3.20 8.06 -2.91 -0.02 3.18 15 28 H 0.31 14.16 8.30 -92.71 -0.77 13.39 15 29 H 0.09 5.36 8.06 -2.91 -0.02 5.34 15 Total: -1.00 -74.38 271.28 4.89 -69.49 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.18 Total: 13.99 kcal Atomic # 6 Polarization: -56.27 SS G_CDS: 3.43 Total: -52.84 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.23 Total: -41.37 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.96 Total: -36.70 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: 9.64 SS G_CDS: -1.03 Total: 8.61 kcal Total: -74.38 4.89 -69.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396356389.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.608 kcal (2) G-P(sol) polarization free energy of solvation -74.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds