Wall clock time and date at job start Mon Mar 30 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36115 * 117.00065 * 2 1 4 4 C 1.32952 * 122.10051 * 0.02562 * 3 2 1 5 5 S 1.75454 * 110.80319 * 179.97438 * 4 3 2 6 6 C 1.76021 * 91.58218 * 0.02562 * 5 4 3 7 7 C 1.40277 * 109.56693 * 359.97438 * 6 5 4 8 8 C 1.41906 * 119.52975 * 179.97438 * 7 6 5 9 9 C 1.35104 * 122.02914 * 359.80123 * 8 7 6 10 10 C 1.41208 * 120.61738 * 0.46756 * 9 8 7 11 11 C 1.40165 * 120.62347 * 179.79412 * 10 9 8 12 12 H 1.08003 * 119.99825 * 153.35706 * 11 10 9 13 13 C 1.40366 * 119.99666 * 333.34947 * 11 10 9 14 14 N 1.30590 * 120.00145 * 335.11065 * 13 11 10 15 15 Si 1.86799 * 119.99729 * 155.11430 * 13 11 10 16 16 H 1.48499 * 109.46970 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47001 * 299.99684 * 15 13 11 18 18 H 1.48493 * 109.47309 * 59.99878 * 15 13 11 19 19 C 1.40861 * 130.36720 * 180.02562 * 6 5 4 20 20 C 1.46163 * 120.50147 * 359.97438 * 19 6 5 21 21 O 1.21404 * 119.99556 * 359.97438 * 20 19 6 22 22 H 1.08997 * 109.46947 * 300.00398 * 1 2 3 23 23 H 1.08999 * 109.47019 * 60.00133 * 1 2 3 24 24 H 1.08994 * 109.47279 * 180.02562 * 1 2 3 25 25 H 1.08009 * 124.59723 * 0.02562 * 4 3 2 26 26 H 1.07999 * 118.98271 * 179.97438 * 8 7 6 27 27 H 1.07997 * 119.69200 * 180.25513 * 9 8 7 28 28 H 0.96994 * 119.99796 * 354.48320 * 14 13 11 29 29 H 1.07996 * 120.00309 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0470 1.2128 0.0000 4 6 1.3642 2.3536 0.0005 5 16 2.4516 3.7306 0.0011 6 6 3.8626 2.6782 -0.0002 7 6 3.4490 1.3378 -0.0004 8 6 4.4226 0.3055 -0.0019 9 6 5.7475 0.5700 -0.0072 10 6 6.2148 1.9025 -0.0015 11 6 7.5893 2.1771 -0.0026 12 1 7.9543 3.1047 -0.4181 13 6 8.4913 1.2464 0.5365 14 7 8.0888 0.3961 1.4422 15 14 10.2674 1.2244 -0.0415 16 1 11.0082 0.1559 0.6758 17 1 10.3094 0.9600 -1.5022 18 1 10.8965 2.5394 0.2417 19 6 5.2356 2.9931 0.0000 20 6 5.6772 4.3865 0.0009 21 8 4.8582 5.2827 0.0010 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.2864 2.4233 0.0013 26 1 4.0943 -0.7234 -0.0016 27 1 6.4558 -0.2453 -0.0123 28 1 7.1896 0.4587 1.8006 29 1 6.7318 4.6187 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396358528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:25 Heat of formation + Delta-G solvation = -48.224687 kcal Electronic energy + Delta-G solvation = -16776.194942 eV Core-core repulsion = 13948.535633 eV Total energy + Delta-G solvation = -2827.659309 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34628 -38.12512 -36.88674 -35.03467 -32.41110 -30.32404 -28.58807 -27.42957 -25.51228 -23.70818 -22.05277 -20.13503 -19.85287 -18.39422 -16.83618 -16.26407 -15.71159 -15.35200 -15.16945 -14.33945 -14.05111 -13.90219 -13.58831 -13.22959 -12.88050 -12.52188 -12.27514 -12.07712 -11.67666 -11.46927 -11.21002 -10.88623 -10.69999 -10.54757 -10.22802 -9.94285 -9.82001 -9.45447 -8.50951 -8.40885 -7.90346 -7.72372 -6.70481 -5.06868 1.68627 1.94391 2.53224 2.77408 2.89129 3.00488 3.08405 3.18739 3.59214 3.72967 3.86863 4.10204 5.02365 5.30342 5.37052 5.50922 5.54768 5.64997 5.89639 6.11754 6.21431 6.43229 6.54781 6.66404 6.71841 7.07070 7.11677 7.21734 7.29218 7.48683 7.60257 7.88803 8.04337 8.20457 8.68319 9.34856 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.025060 B = 0.006861 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.030779 B = 4079.994430 C = 5087.117402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.314 6.314 3 C 0.169 3.831 4 C -0.404 4.404 5 S 0.106 5.894 6 C 0.010 3.990 7 C -0.230 4.230 8 C -0.009 4.009 9 C -0.205 4.205 10 C 0.139 3.861 11 C -0.444 4.444 12 H 0.098 0.902 13 C 0.031 3.969 14 N -0.742 5.742 15 Si 1.070 2.930 16 H -0.267 1.267 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.318 4.318 20 C 0.380 3.620 21 O -0.520 6.520 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.148 0.852 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.310 0.690 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -1.998 -1.566 3.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.228 6.228 3 C 0.114 3.886 4 C -0.537 4.537 5 S 0.367 5.633 6 C -0.107 4.107 7 C -0.236 4.236 8 C -0.030 4.030 9 C -0.224 4.224 10 C 0.132 3.868 11 C -0.468 4.468 12 H 0.116 0.884 13 C -0.198 4.198 14 N -0.362 5.362 15 Si 0.891 3.109 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.328 4.328 20 C 0.248 3.752 21 O -0.403 6.403 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.110 0.890 25 H 0.166 0.834 26 H 0.122 0.878 27 H 0.135 0.865 28 H 0.124 0.876 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.217 -1.098 -1.330 2.809 hybrid contribution -1.716 -0.854 -0.121 1.920 sum -3.933 -1.953 -1.451 4.625 Atomic orbital electron populations 1.22889 0.79544 1.02802 1.00968 1.86015 1.20268 1.27244 1.89276 1.17628 0.90821 0.83501 0.96652 1.24634 1.02871 0.96888 1.29290 1.84162 0.93734 1.06020 1.79416 1.22404 0.96594 0.94476 0.97229 1.16903 0.89537 0.93143 1.24043 1.20271 0.92177 0.96569 0.93941 1.20789 0.94756 0.96541 1.10353 1.18612 0.91991 0.90377 0.85785 1.21034 0.91585 1.05452 1.28762 0.88389 1.27617 1.08384 0.90607 0.93153 1.70383 1.23135 1.28241 1.14453 0.83532 0.71169 0.78487 0.77723 1.19138 1.19154 1.19168 1.20425 0.89343 0.94871 1.28160 1.23148 0.93774 0.87163 0.71077 1.90396 1.58425 1.49566 1.41954 0.93243 0.93245 0.89025 0.83442 0.87822 0.86511 0.87576 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.91 101.05 1.00 1.45 15 2 O -0.31 -5.93 10.46 -20.11 -0.21 -6.14 15 3 C 0.17 3.60 6.66 -40.46 -0.27 3.34 15 4 C -0.40 -8.11 9.97 28.90 0.29 -7.82 15 5 S 0.11 2.33 21.43 -107.50 -2.30 0.02 15 6 C 0.01 0.24 6.34 -37.82 -0.24 0.00 15 7 C -0.23 -5.38 5.88 -106.78 -0.63 -6.01 15 8 C -0.01 -0.20 9.82 -39.29 -0.39 -0.59 15 9 C -0.21 -4.66 7.83 -39.57 -0.31 -4.97 15 10 C 0.14 3.27 5.43 -104.69 -0.57 2.70 15 11 C -0.44 -9.71 8.40 -38.06 -0.32 -10.03 15 12 H 0.10 2.00 6.75 -52.48 -0.35 1.64 15 13 C 0.03 0.64 4.95 -17.28 -0.09 0.55 15 14 N -0.74 -16.40 12.35 55.57 0.69 -15.72 15 15 Si 1.07 17.38 30.00 -169.99 -5.10 12.28 15 16 H -0.27 -4.38 7.11 56.52 0.40 -3.98 15 17 H -0.27 -4.20 7.11 56.52 0.40 -3.80 15 18 H -0.27 -4.09 7.11 56.52 0.40 -3.69 15 19 C -0.32 -7.68 6.08 -102.37 -0.62 -8.30 15 20 C 0.38 8.66 11.02 33.91 0.37 9.03 15 21 O -0.52 -12.73 15.83 5.45 0.09 -12.65 15 22 H 0.05 0.62 7.81 -51.93 -0.41 0.21 15 23 H 0.05 0.62 7.82 -51.93 -0.41 0.21 15 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.15 2.52 6.88 -52.48 -0.36 2.16 15 26 H 0.10 2.10 8.06 -52.49 -0.42 1.68 15 27 H 0.12 2.58 6.56 -52.49 -0.34 2.24 15 28 H 0.31 7.10 6.68 -40.82 -0.27 6.82 15 29 H 0.08 1.63 6.68 -52.49 -0.35 1.28 15 LS Contribution 269.08 15.07 4.05 4.05 Total: -1.00 -26.81 269.08 -6.69 -33.50 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -2.14 Total: 5.31 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.77 Total: -20.66 kcal Atomic # 7 Polarization: -16.40 SS G_CDS: 0.69 Total: -15.72 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.12 Total: -18.79 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.10 Total: 12.28 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.30 Total: 0.02 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.81 -6.69 -33.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396358528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.727 kcal (2) G-P(sol) polarization free energy of solvation -26.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds