Wall clock time and date at job start Mon Mar 30 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36115 * 117.00065 * 2 1 4 4 C 1.32952 * 122.10051 * 0.02562 * 3 2 1 5 5 S 1.75454 * 110.80319 * 179.97438 * 4 3 2 6 6 C 1.76021 * 91.58218 * 0.02562 * 5 4 3 7 7 C 1.40277 * 109.56693 * 359.97438 * 6 5 4 8 8 C 1.41906 * 119.52975 * 179.97438 * 7 6 5 9 9 C 1.35104 * 122.02914 * 359.80123 * 8 7 6 10 10 C 1.41208 * 120.61738 * 0.46756 * 9 8 7 11 11 C 1.40165 * 120.62347 * 179.79412 * 10 9 8 12 12 H 1.08003 * 119.99825 * 153.35706 * 11 10 9 13 13 C 1.40366 * 119.99666 * 333.34947 * 11 10 9 14 14 N 1.30590 * 120.00145 * 335.11065 * 13 11 10 15 15 Si 1.86799 * 119.99729 * 155.11430 * 13 11 10 16 16 H 1.48499 * 109.46970 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47001 * 299.99684 * 15 13 11 18 18 H 1.48493 * 109.47309 * 59.99878 * 15 13 11 19 19 C 1.40861 * 130.36720 * 180.02562 * 6 5 4 20 20 C 1.46163 * 120.50147 * 359.97438 * 19 6 5 21 21 O 1.21404 * 119.99556 * 359.97438 * 20 19 6 22 22 H 1.08997 * 109.46947 * 300.00398 * 1 2 3 23 23 H 1.08999 * 109.47019 * 60.00133 * 1 2 3 24 24 H 1.08994 * 109.47279 * 180.02562 * 1 2 3 25 25 H 1.08009 * 124.59723 * 0.02562 * 4 3 2 26 26 H 1.07999 * 118.98271 * 179.97438 * 8 7 6 27 27 H 1.07997 * 119.69200 * 180.25513 * 9 8 7 28 28 H 0.96994 * 119.99796 * 354.48320 * 14 13 11 29 29 H 1.07996 * 120.00309 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0470 1.2128 0.0000 4 6 1.3642 2.3536 0.0005 5 16 2.4516 3.7306 0.0011 6 6 3.8626 2.6782 -0.0002 7 6 3.4490 1.3378 -0.0004 8 6 4.4226 0.3055 -0.0019 9 6 5.7475 0.5700 -0.0072 10 6 6.2148 1.9025 -0.0015 11 6 7.5893 2.1771 -0.0026 12 1 7.9543 3.1047 -0.4181 13 6 8.4913 1.2464 0.5365 14 7 8.0888 0.3961 1.4422 15 14 10.2674 1.2244 -0.0415 16 1 11.0082 0.1559 0.6758 17 1 10.3094 0.9600 -1.5022 18 1 10.8965 2.5394 0.2417 19 6 5.2356 2.9931 0.0000 20 6 5.6772 4.3865 0.0009 21 8 4.8582 5.2827 0.0010 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.2864 2.4233 0.0013 26 1 4.0943 -0.7234 -0.0016 27 1 6.4558 -0.2453 -0.0123 28 1 7.1896 0.4587 1.8006 29 1 6.7318 4.6187 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396358528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:24 Heat of formation + Delta-G solvation = -62.523525 kcal Electronic energy + Delta-G solvation = -16776.814987 eV Core-core repulsion = 13948.535633 eV Total energy + Delta-G solvation = -2828.279353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.91303 -39.79743 -38.61496 -36.67040 -34.04807 -32.07356 -30.27433 -28.64282 -27.16631 -25.43673 -23.70342 -21.85041 -21.44888 -20.06622 -18.48043 -17.79591 -17.41052 -16.80291 -16.67604 -15.81398 -15.64147 -15.48817 -15.28768 -14.99305 -14.44178 -14.22515 -13.86159 -13.63213 -13.19107 -12.79925 -12.67997 -12.31403 -12.16021 -11.99355 -11.76852 -11.60102 -11.46159 -11.04265 -10.28608 -10.12719 -9.60281 -9.45314 -8.39733 -6.81637 -0.03505 0.18769 0.83187 1.25459 1.34473 1.56356 1.72067 1.86351 1.97826 2.24712 2.48826 2.51622 3.26635 3.84305 3.93269 4.22332 4.28681 4.36929 4.38384 4.61121 4.67170 4.72444 4.89219 4.96817 5.03535 5.33312 5.38528 5.50488 5.57343 5.74978 5.85912 6.33497 6.41456 6.47409 6.91389 7.63101 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.025060 B = 0.006861 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.030779 B = 4079.994430 C = 5087.117402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C 0.159 3.841 4 C -0.391 4.391 5 S 0.098 5.902 6 C -0.019 4.019 7 C -0.251 4.251 8 C -0.015 4.015 9 C -0.210 4.210 10 C 0.117 3.883 11 C -0.447 4.447 12 H 0.112 0.888 13 C 0.006 3.994 14 N -0.755 5.755 15 Si 1.119 2.881 16 H -0.270 1.270 17 H -0.257 1.257 18 H -0.248 1.248 19 C -0.347 4.347 20 C 0.379 3.621 21 O -0.543 6.543 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.124 0.876 25 H 0.180 0.820 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.297 0.703 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 -2.430 -1.928 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.242 6.242 3 C 0.104 3.896 4 C -0.524 4.524 5 S 0.358 5.642 6 C -0.136 4.136 7 C -0.257 4.257 8 C -0.035 4.035 9 C -0.230 4.230 10 C 0.111 3.889 11 C -0.471 4.471 12 H 0.130 0.870 13 C -0.218 4.218 14 N -0.374 5.374 15 Si 0.934 3.066 16 H -0.194 1.194 17 H -0.181 1.181 18 H -0.172 1.172 19 C -0.357 4.357 20 C 0.249 3.751 21 O -0.428 6.428 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.142 0.858 25 H 0.197 0.803 26 H 0.137 0.863 27 H 0.136 0.864 28 H 0.110 0.890 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.107 -1.531 -1.687 3.103 hybrid contribution -1.849 -0.801 0.007 2.015 sum -3.956 -2.332 -1.680 4.890 Atomic orbital electron populations 1.23290 0.76582 1.05378 1.01922 1.85997 1.23251 1.25951 1.89031 1.17590 0.90326 0.84813 0.96850 1.24895 1.04033 0.95509 1.27994 1.84067 0.93724 1.06969 1.79429 1.22746 0.97406 0.95482 0.97919 1.17289 0.91087 0.93138 1.24230 1.20464 0.92086 0.97309 0.93682 1.20845 0.95026 0.96466 1.10626 1.18870 0.92788 0.90600 0.86685 1.21380 0.91307 1.06409 1.27982 0.86989 1.28957 1.11425 0.89307 0.92136 1.70479 1.22470 1.28897 1.15547 0.82963 0.66728 0.79270 0.77686 1.19425 1.18091 1.17157 1.20721 0.89823 0.95699 1.29409 1.23456 0.94758 0.86521 0.70349 1.90375 1.59238 1.49900 1.43289 0.92259 0.92168 0.85820 0.80277 0.86263 0.86423 0.88960 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.91 113.37 1.12 1.66 15 2 O -0.33 -11.83 10.46 -94.86 -0.99 -12.83 15 3 C 0.16 6.65 6.66 21.71 0.14 6.80 15 4 C -0.39 -15.16 9.97 66.65 0.66 -14.49 15 5 S 0.10 4.28 21.43 -56.49 -1.21 3.07 15 6 C -0.02 -0.92 6.34 23.41 0.15 -0.77 15 7 C -0.25 -11.81 5.88 -21.26 -0.13 -11.94 15 8 C -0.02 -0.68 9.82 22.46 0.22 -0.46 15 9 C -0.21 -9.68 7.83 22.28 0.17 -9.50 15 10 C 0.12 5.56 5.43 -19.91 -0.11 5.45 15 11 C -0.45 -19.26 8.40 23.26 0.20 -19.06 15 12 H 0.11 4.40 6.75 -2.91 -0.02 4.38 15 13 C 0.01 0.24 4.95 85.40 0.42 0.66 15 14 N -0.76 -33.14 12.35 21.90 0.27 -32.87 15 15 Si 1.12 32.98 30.00 68.60 2.06 35.04 15 16 H -0.27 -8.07 7.11 99.48 0.71 -7.36 15 17 H -0.26 -7.17 7.11 99.48 0.71 -6.46 15 18 H -0.25 -6.58 7.11 99.48 0.71 -5.87 15 19 C -0.35 -16.99 6.08 -18.40 -0.11 -17.10 15 20 C 0.38 17.33 11.02 69.88 0.77 18.10 15 21 O -0.54 -26.78 15.83 -3.41 -0.05 -26.83 15 22 H 0.06 1.31 7.81 -2.39 -0.02 1.29 15 23 H 0.06 1.32 7.82 -2.39 -0.02 1.30 15 24 H 0.12 2.14 8.14 -2.39 -0.02 2.12 15 25 H 0.18 5.61 6.88 -2.91 -0.02 5.59 15 26 H 0.12 4.84 8.06 -2.91 -0.02 4.82 15 27 H 0.12 5.27 6.56 -2.91 -0.02 5.25 15 28 H 0.30 13.80 6.68 -92.71 -0.62 13.18 15 29 H 0.11 4.29 6.68 -2.91 -0.02 4.27 15 Total: -1.00 -57.49 269.08 4.93 -52.56 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 1.34 Total: 22.52 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 3.52 Total: -40.66 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.27 Total: -32.87 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.05 Total: -39.66 kcal Atomic # 14 Polarization: 32.98 SS G_CDS: 2.06 Total: 35.04 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.21 Total: 3.07 kcal Total: -57.49 4.93 -52.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396358528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.966 kcal (2) G-P(sol) polarization free energy of solvation -57.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds