Wall clock time and date at job start Mon Mar 30 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35340 * 116.99597 * 2 1 4 4 C 1.41508 * 120.22577 * 89.99827 * 3 2 1 5 5 C 1.41162 * 119.98279 * 0.02562 * 4 3 2 6 6 H 1.08001 * 119.99744 * 25.15951 * 5 4 3 7 7 C 1.39853 * 120.00183 * 205.16314 * 5 4 3 8 8 N 1.30932 * 119.99990 * 17.89917 * 7 5 4 9 9 Si 1.86796 * 119.99963 * 197.89879 * 7 5 4 10 10 H 1.48499 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47041 * 119.99965 * 9 7 5 12 12 H 1.48500 * 109.47421 * 239.99788 * 9 7 5 13 13 C 1.39809 * 120.04202 * 179.72136 * 4 3 2 14 14 C 1.40544 * 120.70913 * 0.25883 * 13 4 3 15 15 C 1.45739 * 128.91054 * 180.02562 * 14 13 4 16 16 C 1.31583 * 114.92020 * 180.02562 * 15 14 13 17 17 S 1.75258 * 111.50503 * 359.97438 * 16 15 14 18 18 C 1.39980 * 119.38767 * 0.02562 * 14 13 4 19 19 C 1.39475 * 120.23142 * 270.27994 * 3 2 1 20 20 C 1.46321 * 119.91362 * 359.97343 * 19 3 2 21 21 O 1.21360 * 119.99738 * 180.32648 * 20 19 3 22 22 H 1.08994 * 109.47171 * 299.99398 * 1 2 3 23 23 H 1.08994 * 109.47311 * 60.00420 * 1 2 3 24 24 H 1.09009 * 109.46536 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99913 * 180.02562 * 8 7 5 26 26 H 1.07998 * 119.65034 * 180.27681 * 13 4 3 27 27 H 1.07999 * 122.53824 * 359.97438 * 15 14 13 28 28 H 1.08000 * 124.24700 * 180.02562 * 16 15 14 29 29 H 1.07993 * 120.00149 * 0.32323 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 6 2.3667 1.8407 1.2227 5 6 2.0488 1.2155 2.4478 6 1 1.9482 0.1413 2.4957 7 6 1.8639 1.9872 3.5994 8 7 1.6362 3.2725 3.4966 9 14 1.9419 1.1842 5.2842 10 1 2.2106 -0.2679 5.1285 11 1 3.0313 1.8062 6.0790 12 1 0.6466 1.3762 5.9845 13 6 3.0066 3.0837 1.2182 14 6 3.3311 3.7196 0.0076 15 6 3.9910 5.0015 -0.2049 16 6 4.1596 5.3359 -1.4663 17 16 3.5253 4.1100 -2.5463 18 6 3.0072 3.0970 -1.2036 19 6 2.3569 1.8343 -1.2051 20 6 2.0213 1.1879 -2.4741 21 8 2.2987 1.7305 -3.5235 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.5084 3.8077 4.2954 26 1 3.2544 3.5604 2.1551 27 1 4.3164 5.6297 0.6111 28 1 4.6304 6.2507 -1.7949 29 1 1.5267 0.2278 -2.4768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396362319.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:47 Heat of formation + Delta-G solvation = -34.269224 kcal Electronic energy + Delta-G solvation = -17080.151918 eV Core-core repulsion = 14253.097763 eV Total energy + Delta-G solvation = -2827.054155 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.26432 -37.78293 -36.90907 -34.60698 -32.84499 -30.16134 -28.45904 -26.55938 -25.33188 -23.87503 -21.96096 -20.46479 -19.72949 -17.35397 -17.01223 -16.34875 -15.70173 -15.21868 -14.81702 -14.51202 -14.12749 -13.73935 -13.49926 -13.34532 -12.57571 -12.45686 -12.31236 -12.08901 -11.50535 -11.37340 -11.16701 -10.85061 -10.57226 -10.22141 -9.99753 -9.86934 -9.47100 -9.31267 -8.74858 -8.44581 -7.47576 -7.01198 -6.93709 -4.55888 1.36464 1.91272 2.51547 2.72614 2.96598 3.00852 3.02426 3.11143 3.46014 3.76684 4.26269 4.62233 4.99085 5.27894 5.47332 5.82239 5.85612 5.94540 5.99402 6.20413 6.33154 6.50320 6.52944 6.72286 6.86312 6.96101 6.99223 7.35319 7.55308 7.71422 8.03489 8.07501 8.38739 8.53685 8.67046 9.92246 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.008204 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.095516 B = 3412.091945 C = 4547.940496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.327 6.327 3 C 0.078 3.922 4 C 0.077 3.923 5 C -0.442 4.442 6 H 0.090 0.910 7 C 0.073 3.927 8 N -0.789 5.789 9 Si 0.912 3.088 10 H -0.257 1.257 11 H -0.270 1.270 12 H -0.273 1.273 13 C -0.095 4.095 14 C -0.073 4.073 15 C -0.110 4.110 16 C -0.227 4.227 17 S 0.065 5.935 18 C -0.166 4.166 19 C -0.164 4.164 20 C 0.379 3.621 21 O -0.476 6.476 22 H 0.052 0.948 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.285 0.715 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.151 0.849 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -0.610 -1.551 1.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.031 3.969 4 C 0.073 3.927 5 C -0.471 4.471 6 H 0.108 0.892 7 C -0.146 4.146 8 N -0.414 5.414 9 Si 0.736 3.264 10 H -0.181 1.181 11 H -0.195 1.195 12 H -0.199 1.199 13 C -0.117 4.117 14 C -0.079 4.079 15 C -0.141 4.141 16 C -0.360 4.360 17 S 0.326 5.674 18 C -0.282 4.282 19 C -0.171 4.171 20 C 0.241 3.759 21 O -0.353 6.353 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.168 0.832 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.226 -0.353 -3.521 3.546 hybrid contribution -0.167 0.154 2.573 2.583 sum -0.394 -0.199 -0.948 1.046 Atomic orbital electron populations 1.22904 0.80738 1.01698 1.00541 1.85798 1.18768 1.25566 1.94203 1.18814 0.99513 0.87495 0.91095 1.17568 0.91652 0.91637 0.91873 1.19512 1.40549 0.95627 0.91411 0.89152 1.25979 0.92045 0.94673 1.01915 1.69831 1.32385 1.06955 1.32195 0.86172 0.78768 0.80893 0.80536 1.18071 1.19511 1.19855 1.21275 0.98566 0.96686 0.95131 1.19197 1.01331 0.94004 0.93367 1.20937 1.00777 0.96000 0.96406 1.24988 1.08847 1.04367 0.97756 1.84043 1.62891 1.12498 1.08014 1.22021 1.11759 0.98950 0.95442 1.19888 1.07571 0.94840 0.94770 1.23746 0.75443 0.89594 0.87138 1.90441 1.44543 1.65511 1.34792 0.92914 0.94895 0.90022 0.90410 0.85032 0.85227 0.83186 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 11.13 101.05 1.12 1.72 15 2 O -0.33 -6.69 8.80 -17.71 -0.16 -6.85 15 3 C 0.08 1.77 5.75 -37.88 -0.22 1.55 15 4 C 0.08 1.89 5.56 -106.95 -0.59 1.29 15 5 C -0.44 -10.61 8.69 -37.87 -0.33 -10.94 15 6 H 0.09 2.14 7.64 -52.49 -0.40 1.74 15 7 C 0.07 1.65 5.11 -17.33 -0.09 1.56 15 8 N -0.79 -18.55 11.00 55.54 0.61 -17.94 15 9 Si 0.91 17.15 29.60 -169.99 -5.03 12.12 15 10 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 11 H -0.27 -5.04 7.11 56.52 0.40 -4.63 15 12 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 13 C -0.09 -2.29 8.71 -38.13 -0.33 -2.62 15 14 C -0.07 -1.68 6.02 -105.38 -0.63 -2.31 15 15 C -0.11 -2.17 10.38 -38.44 -0.40 -2.57 15 16 C -0.23 -4.13 11.00 28.88 0.32 -3.81 15 17 S 0.07 1.33 21.32 -107.50 -2.29 -0.96 15 18 C -0.17 -3.83 6.36 -37.48 -0.24 -4.07 15 19 C -0.16 -3.69 5.90 -104.73 -0.62 -4.31 15 20 C 0.38 7.58 11.15 33.98 0.38 7.96 15 21 O -0.48 -10.34 15.76 5.49 0.09 -10.26 15 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 15 24 H 0.08 1.08 8.14 -51.92 -0.42 0.66 15 25 H 0.28 6.07 8.30 -40.82 -0.34 5.74 15 26 H 0.13 3.23 6.14 -52.49 -0.32 2.91 15 27 H 0.13 2.25 8.06 -52.49 -0.42 1.82 15 28 H 0.15 2.20 8.06 -52.49 -0.42 1.77 15 29 H 0.09 1.57 7.59 -52.49 -0.40 1.17 15 LS Contribution 273.77 15.07 4.13 4.13 Total: -1.00 -26.97 273.77 -6.66 -33.63 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -2.37 Total: 2.67 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.63 Total: -16.54 kcal Atomic # 7 Polarization: -18.55 SS G_CDS: 0.61 Total: -17.94 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.07 Total: -17.10 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.29 Total: -0.96 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.97 -6.66 -33.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396362319.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.642 kcal (2) G-P(sol) polarization free energy of solvation -26.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds