Wall clock time and date at job start Mon Mar 30 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35340 * 116.99597 * 2 1 4 4 C 1.41508 * 120.22577 * 89.99827 * 3 2 1 5 5 C 1.41162 * 119.98279 * 0.02562 * 4 3 2 6 6 H 1.08001 * 119.99744 * 25.15951 * 5 4 3 7 7 C 1.39853 * 120.00183 * 205.16314 * 5 4 3 8 8 N 1.30932 * 119.99990 * 17.89917 * 7 5 4 9 9 Si 1.86796 * 119.99963 * 197.89879 * 7 5 4 10 10 H 1.48499 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47041 * 119.99965 * 9 7 5 12 12 H 1.48500 * 109.47421 * 239.99788 * 9 7 5 13 13 C 1.39809 * 120.04202 * 179.72136 * 4 3 2 14 14 C 1.40544 * 120.70913 * 0.25883 * 13 4 3 15 15 C 1.45739 * 128.91054 * 180.02562 * 14 13 4 16 16 C 1.31583 * 114.92020 * 180.02562 * 15 14 13 17 17 S 1.75258 * 111.50503 * 359.97438 * 16 15 14 18 18 C 1.39980 * 119.38767 * 0.02562 * 14 13 4 19 19 C 1.39475 * 120.23142 * 270.27994 * 3 2 1 20 20 C 1.46321 * 119.91362 * 359.97343 * 19 3 2 21 21 O 1.21360 * 119.99738 * 180.32648 * 20 19 3 22 22 H 1.08994 * 109.47171 * 299.99398 * 1 2 3 23 23 H 1.08994 * 109.47311 * 60.00420 * 1 2 3 24 24 H 1.09009 * 109.46536 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99913 * 180.02562 * 8 7 5 26 26 H 1.07998 * 119.65034 * 180.27681 * 13 4 3 27 27 H 1.07999 * 122.53824 * 359.97438 * 15 14 13 28 28 H 1.08000 * 124.24700 * 180.02562 * 16 15 14 29 29 H 1.07993 * 120.00149 * 0.32323 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 6 2.3667 1.8407 1.2227 5 6 2.0488 1.2155 2.4478 6 1 1.9482 0.1413 2.4957 7 6 1.8639 1.9872 3.5994 8 7 1.6362 3.2725 3.4966 9 14 1.9419 1.1842 5.2842 10 1 2.2106 -0.2679 5.1285 11 1 3.0313 1.8062 6.0790 12 1 0.6466 1.3762 5.9845 13 6 3.0066 3.0837 1.2182 14 6 3.3311 3.7196 0.0076 15 6 3.9910 5.0015 -0.2049 16 6 4.1596 5.3359 -1.4663 17 16 3.5253 4.1100 -2.5463 18 6 3.0072 3.0970 -1.2036 19 6 2.3569 1.8343 -1.2051 20 6 2.0213 1.1879 -2.4741 21 8 2.2987 1.7305 -3.5235 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.5084 3.8077 4.2954 26 1 3.2544 3.5604 2.1551 27 1 4.3164 5.6297 0.6111 28 1 4.6304 6.2507 -1.7949 29 1 1.5267 0.2278 -2.4768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396362319.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:47 Heat of formation + Delta-G solvation = -48.664348 kcal Electronic energy + Delta-G solvation = -17080.776137 eV Core-core repulsion = 14253.097763 eV Total energy + Delta-G solvation = -2827.678374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.92309 -39.42583 -38.51950 -36.29459 -34.48916 -31.89745 -30.08758 -28.08498 -26.99462 -25.53237 -23.57222 -22.14723 -21.33990 -19.02365 -18.73231 -17.96421 -17.29746 -16.86884 -16.37142 -16.10251 -15.73658 -15.24084 -15.12050 -14.96876 -14.16144 -14.04683 -13.96356 -13.71942 -13.15472 -12.90911 -12.64933 -12.42615 -12.13775 -11.86421 -11.63995 -11.50035 -11.05542 -10.97449 -10.38725 -10.16396 -9.17942 -8.71456 -8.59238 -6.35623 -0.30313 0.25129 0.91825 1.15690 1.39159 1.41983 1.54832 1.56985 1.82986 2.19599 2.57039 3.00405 3.44354 3.53956 3.99770 4.26143 4.44704 4.49856 4.66973 4.76654 4.84207 4.84853 4.95413 5.06027 5.22649 5.23719 5.29401 5.67534 5.81932 5.94183 6.28981 6.45977 6.63203 6.77276 6.96247 8.24259 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.008204 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.095516 B = 3412.091945 C = 4547.940496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.334 6.334 3 C 0.079 3.921 4 C 0.051 3.949 5 C -0.466 4.466 6 H 0.086 0.914 7 C 0.038 3.962 8 N -0.817 5.817 9 Si 0.981 3.019 10 H -0.257 1.257 11 H -0.266 1.266 12 H -0.266 1.266 13 C -0.121 4.121 14 C -0.085 4.085 15 C -0.131 4.131 16 C -0.202 4.202 17 S 0.069 5.931 18 C -0.197 4.197 19 C -0.180 4.180 20 C 0.387 3.613 21 O -0.492 6.492 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.121 0.879 25 H 0.292 0.708 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.194 0.806 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -0.773 -1.830 2.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.251 6.251 3 C 0.032 3.968 4 C 0.046 3.954 5 C -0.495 4.495 6 H 0.104 0.896 7 C -0.178 4.178 8 N -0.443 5.443 9 Si 0.802 3.198 10 H -0.180 1.180 11 H -0.190 1.190 12 H -0.191 1.191 13 C -0.143 4.143 14 C -0.092 4.092 15 C -0.162 4.162 16 C -0.335 4.335 17 S 0.329 5.671 18 C -0.312 4.312 19 C -0.186 4.186 20 C 0.249 3.751 21 O -0.370 6.370 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.139 0.861 25 H 0.103 0.897 26 H 0.137 0.863 27 H 0.169 0.831 28 H 0.211 0.789 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.334 -0.516 -3.815 3.864 hybrid contribution -0.163 0.215 2.552 2.566 sum -0.498 -0.301 -1.263 1.391 Atomic orbital electron populations 1.23139 0.78426 1.04248 1.00288 1.85743 1.20779 1.24419 1.94188 1.18892 0.99308 0.87730 0.90839 1.17919 0.92201 0.92316 0.92935 1.19636 1.42021 0.95525 0.92314 0.89609 1.26729 0.91080 0.95006 1.04969 1.69874 1.32742 1.08154 1.33505 0.85152 0.78955 0.79726 0.75974 1.18037 1.19050 1.19054 1.21196 1.00502 0.97418 0.95234 1.19577 1.01219 0.95332 0.93060 1.21113 1.01751 0.95394 0.97915 1.25405 1.06888 1.04720 0.96462 1.83937 1.62817 1.12712 1.07676 1.22438 1.12321 0.99867 0.96597 1.20268 1.07443 0.95061 0.95833 1.24103 0.74849 0.90383 0.85731 1.90434 1.45286 1.66216 1.35036 0.94775 0.93558 0.86068 0.89685 0.86336 0.83100 0.78907 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.13 113.37 1.26 2.30 15 2 O -0.33 -13.48 8.80 -86.29 -0.76 -14.24 15 3 C 0.08 3.65 5.75 23.37 0.13 3.78 15 4 C 0.05 2.55 5.56 -21.38 -0.12 2.43 15 5 C -0.47 -22.97 8.69 23.38 0.20 -22.76 15 6 H 0.09 4.15 7.64 -2.91 -0.02 4.13 15 7 C 0.04 1.77 5.11 85.22 0.44 2.21 15 8 N -0.82 -39.29 11.00 21.82 0.24 -39.05 15 9 Si 0.98 35.20 29.60 68.60 2.03 37.23 15 10 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 11 H -0.27 -9.28 7.11 99.48 0.71 -8.57 15 12 H -0.27 -9.15 7.11 99.48 0.71 -8.44 15 13 C -0.12 -6.10 8.71 23.21 0.20 -5.90 15 14 C -0.09 -3.98 6.02 -20.36 -0.12 -4.10 15 15 C -0.13 -5.06 10.38 23.62 0.25 -4.82 15 16 C -0.20 -6.88 11.00 67.23 0.74 -6.14 15 17 S 0.07 2.70 21.32 -56.49 -1.20 1.50 15 18 C -0.20 -9.08 6.36 23.63 0.15 -8.93 15 19 C -0.18 -8.06 5.90 -19.94 -0.12 -8.17 15 20 C 0.39 14.94 11.15 69.92 0.78 15.72 15 21 O -0.49 -20.72 15.76 -3.28 -0.05 -20.78 15 22 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 15 24 H 0.12 2.86 8.14 -2.38 -0.02 2.85 15 25 H 0.29 12.64 8.30 -92.71 -0.77 11.87 15 26 H 0.12 6.11 6.14 -2.91 -0.02 6.09 15 27 H 0.15 5.05 8.06 -2.91 -0.02 5.03 15 28 H 0.19 4.83 8.06 -2.91 -0.02 4.80 15 29 H 0.13 4.11 7.59 -2.91 -0.02 4.09 15 Total: -1.00 -58.99 273.77 5.23 -53.76 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.18 Total: 15.96 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 3.79 Total: -34.38 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.24 Total: -39.05 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.81 Total: -35.02 kcal Atomic # 14 Polarization: 35.20 SS G_CDS: 2.03 Total: 37.23 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.20 Total: 1.50 kcal Total: -58.99 5.23 -53.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396362319.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.097 kcal (2) G-P(sol) polarization free energy of solvation -58.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds