Wall clock time and date at job start Mon Mar 30 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32748 * 122.08898 * 2 1 4 4 S 1.75528 * 110.65247 * 180.02562 * 3 2 1 5 5 C 1.76023 * 91.49665 * 0.02562 * 4 3 2 6 6 C 1.39688 * 109.36163 * 359.74452 * 5 4 3 7 7 C 1.47877 * 118.03105 * 179.67916 * 6 5 4 8 8 C 1.40236 * 120.26173 * 180.26073 * 7 6 5 9 9 H 1.07998 * 119.99641 * 38.27647 * 8 7 6 10 10 C 1.40343 * 119.99886 * 218.26838 * 8 7 6 11 11 N 1.30604 * 120.00223 * 8.40323 * 10 8 7 12 12 Si 1.86808 * 120.00023 * 188.39414 * 10 8 7 13 13 H 1.48502 * 109.46943 * 90.00413 * 12 10 8 14 14 H 1.48503 * 109.47154 * 210.00541 * 12 10 8 15 15 H 1.48494 * 109.47019 * 330.00532 * 12 10 8 16 16 C 1.40634 * 119.47173 * 0.51983 * 7 6 5 17 17 C 1.36014 * 120.51055 * 359.71991 * 16 7 6 18 18 C 1.39778 * 121.07281 * 0.03950 * 17 16 7 19 19 C 1.47221 * 119.48290 * 179.97438 * 18 17 16 20 20 O 1.21546 * 119.99593 * 179.97438 * 19 18 17 21 21 O 1.34818 * 120.00138 * 359.97438 * 19 18 17 22 22 H 1.09006 * 109.47493 * 96.64370 * 1 2 3 23 23 H 1.08997 * 109.47620 * 336.64170 * 1 2 3 24 24 H 1.09004 * 109.46809 * 216.63609 * 1 2 3 25 25 H 1.07994 * 124.67433 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00124 * 179.97438 * 11 10 8 27 27 H 1.08008 * 119.74380 * 179.73531 * 16 7 6 28 28 H 1.08001 * 119.46002 * 180.02562 * 17 16 7 29 29 H 0.96695 * 117.00607 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2122 1.1247 0.0000 4 16 3.9326 0.7766 -0.0007 5 6 3.6288 -0.9572 -0.0018 6 6 2.2507 -1.1859 0.0043 7 6 1.7788 -2.5873 -0.0028 8 6 0.4054 -2.8705 -0.0026 9 1 -0.2725 -2.2572 -0.5778 10 6 -0.0882 -3.9509 0.7448 11 7 0.6998 -4.5905 1.5668 12 14 -1.8724 -4.4741 0.5642 13 1 -1.9836 -5.4902 -0.5131 14 1 -2.3497 -5.0558 1.8445 15 1 -2.7021 -3.2923 0.2176 16 6 2.7183 -3.6337 -0.0043 17 6 4.0516 -3.3647 -0.0049 18 6 4.5220 -2.0485 -0.0033 19 6 5.9727 -1.7975 -0.0035 20 8 6.3920 -0.6566 -0.0026 21 8 6.8360 -2.8330 -0.0047 22 1 -0.3634 -0.1189 -1.0208 23 1 -0.3634 0.9434 0.4074 24 1 -0.3633 -0.8247 0.6133 25 1 1.7861 2.1170 -0.0004 26 1 0.3586 -5.3370 2.0837 27 1 2.3785 -4.6590 -0.0051 28 1 4.7583 -4.1815 -0.0064 29 1 7.7789 -2.6186 -0.0043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396362839.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:32 Heat of formation + Delta-G solvation = -66.367523 kcal Electronic energy + Delta-G solvation = -16969.939548 eV Core-core repulsion = 14141.493507 eV Total energy + Delta-G solvation = -2828.446041 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31641 -38.11932 -35.22536 -34.97346 -34.04135 -30.41490 -28.99150 -27.40996 -25.71014 -22.87429 -21.89200 -20.39298 -18.69510 -18.15974 -17.02593 -16.29453 -15.65193 -14.87825 -14.72891 -14.44171 -14.09714 -13.50998 -13.21208 -12.83088 -12.42419 -12.09545 -11.88069 -11.71943 -11.51983 -11.30633 -11.16024 -10.84138 -10.77166 -10.31866 -10.09499 -10.03708 -9.76285 -9.60846 -9.25967 -8.17096 -7.48261 -7.25681 -6.79816 -4.84847 1.76602 2.06563 2.65656 2.77383 2.81583 2.85406 3.13560 3.32777 3.54995 3.68095 4.02136 4.28375 5.16801 5.77049 5.94294 6.04569 6.18846 6.30948 6.35108 6.40264 6.58671 6.62679 6.73237 6.93046 7.03839 7.20120 7.27677 7.50711 7.56857 7.60525 7.71100 8.09997 8.24835 8.41635 8.80850 9.62392 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.008040 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.203178 B = 3481.657435 C = 4640.209986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.033 4.033 3 C -0.299 4.299 4 S 0.080 5.920 5 C -0.026 4.026 6 C -0.183 4.183 7 C 0.179 3.821 8 C -0.416 4.416 9 H 0.102 0.898 10 C 0.069 3.931 11 N -0.756 5.756 12 Si 0.920 3.080 13 H -0.261 1.261 14 H -0.272 1.272 15 H -0.255 1.255 16 C -0.196 4.196 17 C -0.007 4.007 18 C -0.253 4.253 19 C 0.521 3.479 20 O -0.550 6.550 21 O -0.524 6.524 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.145 0.855 26 H 0.294 0.706 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 0.366 -1.363 1.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.044 4.044 3 C -0.432 4.432 4 S 0.344 5.656 5 C -0.143 4.143 6 C -0.190 4.190 7 C 0.173 3.827 8 C -0.443 4.443 9 H 0.119 0.881 10 C -0.155 4.155 11 N -0.377 5.377 12 Si 0.743 3.257 13 H -0.186 1.186 14 H -0.196 1.196 15 H -0.178 1.178 16 C -0.217 4.217 17 C -0.028 4.028 18 C -0.262 4.262 19 C 0.372 3.628 20 O -0.445 6.445 21 O -0.334 6.334 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.163 0.837 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.124 1.369 -1.169 1.804 hybrid contribution -1.197 -0.998 0.124 1.563 sum -1.320 0.371 -1.045 1.724 Atomic orbital electron populations 1.20806 0.91161 1.02089 1.01914 1.18416 0.96303 0.91124 0.98601 1.24794 0.97349 1.00861 1.20202 1.84148 1.03736 0.99287 1.78390 1.22290 0.95861 0.95139 1.01005 1.19037 0.90157 0.93827 1.15959 1.18622 0.93324 0.87882 0.82838 1.20033 0.93566 1.08916 1.21738 0.88060 1.26238 1.01578 0.94245 0.93478 1.69678 1.38128 1.14965 1.14925 0.86070 0.80162 0.80257 0.79208 1.18602 1.19631 1.17815 1.20627 0.91448 0.98974 1.10602 1.20455 0.95940 0.93619 0.92820 1.17267 0.86138 0.92684 1.30078 1.21081 0.87787 0.81663 0.72238 1.90757 1.79642 1.23386 1.50717 1.84637 1.21086 1.40508 1.87194 0.92014 0.93369 0.89395 0.83687 0.89501 0.86209 0.87205 0.74860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 8.56 36.00 0.31 -1.53 15 2 C -0.03 -0.71 5.81 -105.85 -0.62 -1.33 15 3 C -0.30 -6.09 10.81 28.85 0.31 -5.77 15 4 S 0.08 1.75 21.38 -107.50 -2.30 -0.55 15 5 C -0.03 -0.64 6.33 -37.98 -0.24 -0.88 15 6 C -0.18 -4.40 6.01 -104.76 -0.63 -5.03 15 7 C 0.18 4.32 5.61 -104.30 -0.59 3.74 15 8 C -0.42 -9.32 7.00 -38.04 -0.27 -9.59 15 9 H 0.10 2.12 5.85 -52.49 -0.31 1.81 15 10 C 0.07 1.45 5.24 -17.28 -0.09 1.36 15 11 N -0.76 -16.77 11.36 55.57 0.63 -16.14 15 12 Si 0.92 15.64 29.57 -169.99 -5.03 10.62 15 13 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 14 H -0.27 -4.58 7.11 56.52 0.40 -4.18 15 15 H -0.25 -4.25 7.11 56.52 0.40 -3.84 15 16 C -0.20 -4.60 8.51 -39.48 -0.34 -4.94 15 17 C -0.01 -0.17 9.46 -39.80 -0.38 -0.55 15 18 C -0.25 -5.98 5.90 -104.62 -0.62 -6.60 15 19 C 0.52 11.41 8.25 34.38 0.28 11.70 15 20 O -0.55 -12.90 15.70 -19.30 -0.30 -13.21 15 21 O -0.52 -9.21 12.59 -40.81 -0.51 -9.72 15 22 H 0.06 1.04 7.97 -51.93 -0.41 0.63 15 23 H 0.05 0.75 8.07 -51.93 -0.42 0.34 15 24 H 0.09 1.68 5.84 -51.93 -0.30 1.38 15 25 H 0.15 2.52 8.06 -52.49 -0.42 2.09 15 26 H 0.29 5.83 8.29 -40.82 -0.34 5.49 15 27 H 0.12 2.78 6.83 -52.48 -0.36 2.42 15 28 H 0.11 2.22 7.51 -52.49 -0.39 1.83 15 29 H 0.40 4.83 9.11 45.56 0.42 5.25 15 LS Contribution 266.95 15.07 4.02 4.02 Total: -1.00 -27.51 266.95 -7.68 -35.18 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -1.34 Total: 9.20 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -2.85 Total: -19.41 kcal Atomic # 7 Polarization: -16.77 SS G_CDS: 0.63 Total: -16.14 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.82 Total: -22.93 kcal Atomic # 14 Polarization: 15.64 SS G_CDS: -5.03 Total: 10.62 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.30 Total: -0.55 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.51 -7.68 -35.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396362839.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.184 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds