Wall clock time and date at job start Mon Mar 30 2020 06:11:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.32748 * 122.08898 * 2 1
4 4 S 1.75528 * 110.65247 * 180.02562 * 3 2 1
5 5 C 1.76023 * 91.49665 * 0.02562 * 4 3 2
6 6 C 1.39688 * 109.36163 * 359.74452 * 5 4 3
7 7 C 1.47877 * 118.03105 * 179.67916 * 6 5 4
8 8 C 1.40236 * 120.26173 * 180.26073 * 7 6 5
9 9 H 1.07998 * 119.99641 * 38.27647 * 8 7 6
10 10 C 1.40343 * 119.99886 * 218.26838 * 8 7 6
11 11 N 1.30604 * 120.00223 * 8.40323 * 10 8 7
12 12 Si 1.86808 * 120.00023 * 188.39414 * 10 8 7
13 13 H 1.48502 * 109.46943 * 90.00413 * 12 10 8
14 14 H 1.48503 * 109.47154 * 210.00541 * 12 10 8
15 15 H 1.48494 * 109.47019 * 330.00532 * 12 10 8
16 16 C 1.40634 * 119.47173 * 0.51983 * 7 6 5
17 17 C 1.36014 * 120.51055 * 359.71991 * 16 7 6
18 18 C 1.39778 * 121.07281 * 0.03950 * 17 16 7
19 19 C 1.47221 * 119.48290 * 179.97438 * 18 17 16
20 20 O 1.21546 * 119.99593 * 179.97438 * 19 18 17
21 21 O 1.34818 * 120.00138 * 359.97438 * 19 18 17
22 22 H 1.09006 * 109.47493 * 96.64370 * 1 2 3
23 23 H 1.08997 * 109.47620 * 336.64170 * 1 2 3
24 24 H 1.09004 * 109.46809 * 216.63609 * 1 2 3
25 25 H 1.07994 * 124.67433 * 359.97438 * 3 2 1
26 26 H 0.96998 * 120.00124 * 179.97438 * 11 10 8
27 27 H 1.08008 * 119.74380 * 179.73531 * 16 7 6
28 28 H 1.08001 * 119.46002 * 180.02562 * 17 16 7
29 29 H 0.96695 * 117.00607 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2122 1.1247 0.0000
4 16 3.9326 0.7766 -0.0007
5 6 3.6288 -0.9572 -0.0018
6 6 2.2507 -1.1859 0.0043
7 6 1.7788 -2.5873 -0.0028
8 6 0.4054 -2.8705 -0.0026
9 1 -0.2725 -2.2572 -0.5778
10 6 -0.0882 -3.9509 0.7448
11 7 0.6998 -4.5905 1.5668
12 14 -1.8724 -4.4741 0.5642
13 1 -1.9836 -5.4902 -0.5131
14 1 -2.3497 -5.0558 1.8445
15 1 -2.7021 -3.2923 0.2176
16 6 2.7183 -3.6337 -0.0043
17 6 4.0516 -3.3647 -0.0049
18 6 4.5220 -2.0485 -0.0033
19 6 5.9727 -1.7975 -0.0035
20 8 6.3920 -0.6566 -0.0026
21 8 6.8360 -2.8330 -0.0047
22 1 -0.3634 -0.1189 -1.0208
23 1 -0.3634 0.9434 0.4074
24 1 -0.3633 -0.8247 0.6133
25 1 1.7861 2.1170 -0.0004
26 1 0.3586 -5.3370 2.0837
27 1 2.3785 -4.6590 -0.0051
28 1 4.7583 -4.1815 -0.0064
29 1 7.7789 -2.6186 -0.0043
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396362839.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:11:32
Heat of formation + Delta-G solvation = -66.367523 kcal
Electronic energy + Delta-G solvation = -16969.939548 eV
Core-core repulsion = 14141.493507 eV
Total energy + Delta-G solvation = -2828.446041 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 262.045 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.31641 -38.11932 -35.22536 -34.97346 -34.04135 -30.41490 -28.99150 -27.40996
-25.71014 -22.87429 -21.89200 -20.39298 -18.69510 -18.15974 -17.02593 -16.29453
-15.65193 -14.87825 -14.72891 -14.44171 -14.09714 -13.50998 -13.21208 -12.83088
-12.42419 -12.09545 -11.88069 -11.71943 -11.51983 -11.30633 -11.16024 -10.84138
-10.77166 -10.31866 -10.09499 -10.03708 -9.76285 -9.60846 -9.25967 -8.17096
-7.48261 -7.25681 -6.79816 -4.84847 1.76602 2.06563 2.65656 2.77383
2.81583 2.85406 3.13560 3.32777 3.54995 3.68095 4.02136 4.28375
5.16801 5.77049 5.94294 6.04569 6.18846 6.30948 6.35108 6.40264
6.58671 6.62679 6.73237 6.93046 7.03839 7.20120 7.27677 7.50711
7.56857 7.60525 7.71100 8.09997 8.24835 8.41635 8.80850 9.62392
Molecular weight = 262.05amu
Principal moments of inertia in cm(-1)
A = 0.022249 B = 0.008040 C = 0.006033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1258.203178 B = 3481.657435 C = 4640.209986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C -0.033 4.033
3 C -0.299 4.299
4 S 0.080 5.920
5 C -0.026 4.026
6 C -0.183 4.183
7 C 0.179 3.821
8 C -0.416 4.416
9 H 0.102 0.898
10 C 0.069 3.931
11 N -0.756 5.756
12 Si 0.920 3.080
13 H -0.261 1.261
14 H -0.272 1.272
15 H -0.255 1.255
16 C -0.196 4.196
17 C -0.007 4.007
18 C -0.253 4.253
19 C 0.521 3.479
20 O -0.550 6.550
21 O -0.524 6.524
22 H 0.061 0.939
23 H 0.047 0.953
24 H 0.087 0.913
25 H 0.145 0.855
26 H 0.294 0.706
27 H 0.120 0.880
28 H 0.110 0.890
29 H 0.396 0.604
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.055 0.366 -1.363 1.762
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.044 4.044
3 C -0.432 4.432
4 S 0.344 5.656
5 C -0.143 4.143
6 C -0.190 4.190
7 C 0.173 3.827
8 C -0.443 4.443
9 H 0.119 0.881
10 C -0.155 4.155
11 N -0.377 5.377
12 Si 0.743 3.257
13 H -0.186 1.186
14 H -0.196 1.196
15 H -0.178 1.178
16 C -0.217 4.217
17 C -0.028 4.028
18 C -0.262 4.262
19 C 0.372 3.628
20 O -0.445 6.445
21 O -0.334 6.334
22 H 0.080 0.920
23 H 0.066 0.934
24 H 0.106 0.894
25 H 0.163 0.837
26 H 0.105 0.895
27 H 0.138 0.862
28 H 0.128 0.872
29 H 0.251 0.749
Dipole moment (debyes) X Y Z Total
from point charges -0.124 1.369 -1.169 1.804
hybrid contribution -1.197 -0.998 0.124 1.563
sum -1.320 0.371 -1.045 1.724
Atomic orbital electron populations
1.20806 0.91161 1.02089 1.01914 1.18416 0.96303 0.91124 0.98601
1.24794 0.97349 1.00861 1.20202 1.84148 1.03736 0.99287 1.78390
1.22290 0.95861 0.95139 1.01005 1.19037 0.90157 0.93827 1.15959
1.18622 0.93324 0.87882 0.82838 1.20033 0.93566 1.08916 1.21738
0.88060 1.26238 1.01578 0.94245 0.93478 1.69678 1.38128 1.14965
1.14925 0.86070 0.80162 0.80257 0.79208 1.18602 1.19631 1.17815
1.20627 0.91448 0.98974 1.10602 1.20455 0.95940 0.93619 0.92820
1.17267 0.86138 0.92684 1.30078 1.21081 0.87787 0.81663 0.72238
1.90757 1.79642 1.23386 1.50717 1.84637 1.21086 1.40508 1.87194
0.92014 0.93369 0.89395 0.83687 0.89501 0.86209 0.87205 0.74860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.83 8.56 36.00 0.31 -1.53 15
2 C -0.03 -0.71 5.81 -105.85 -0.62 -1.33 15
3 C -0.30 -6.09 10.81 28.85 0.31 -5.77 15
4 S 0.08 1.75 21.38 -107.50 -2.30 -0.55 15
5 C -0.03 -0.64 6.33 -37.98 -0.24 -0.88 15
6 C -0.18 -4.40 6.01 -104.76 -0.63 -5.03 15
7 C 0.18 4.32 5.61 -104.30 -0.59 3.74 15
8 C -0.42 -9.32 7.00 -38.04 -0.27 -9.59 15
9 H 0.10 2.12 5.85 -52.49 -0.31 1.81 15
10 C 0.07 1.45 5.24 -17.28 -0.09 1.36 15
11 N -0.76 -16.77 11.36 55.57 0.63 -16.14 15
12 Si 0.92 15.64 29.57 -169.99 -5.03 10.62 15
13 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15
14 H -0.27 -4.58 7.11 56.52 0.40 -4.18 15
15 H -0.25 -4.25 7.11 56.52 0.40 -3.84 15
16 C -0.20 -4.60 8.51 -39.48 -0.34 -4.94 15
17 C -0.01 -0.17 9.46 -39.80 -0.38 -0.55 15
18 C -0.25 -5.98 5.90 -104.62 -0.62 -6.60 15
19 C 0.52 11.41 8.25 34.38 0.28 11.70 15
20 O -0.55 -12.90 15.70 -19.30 -0.30 -13.21 15
21 O -0.52 -9.21 12.59 -40.81 -0.51 -9.72 15
22 H 0.06 1.04 7.97 -51.93 -0.41 0.63 15
23 H 0.05 0.75 8.07 -51.93 -0.42 0.34 15
24 H 0.09 1.68 5.84 -51.93 -0.30 1.38 15
25 H 0.15 2.52 8.06 -52.49 -0.42 2.09 15
26 H 0.29 5.83 8.29 -40.82 -0.34 5.49 15
27 H 0.12 2.78 6.83 -52.48 -0.36 2.42 15
28 H 0.11 2.22 7.51 -52.49 -0.39 1.83 15
29 H 0.40 4.83 9.11 45.56 0.42 5.25 15
LS Contribution 266.95 15.07 4.02 4.02
Total: -1.00 -27.51 266.95 -7.68 -35.18
By element:
Atomic # 1 Polarization: 10.54 SS G_CDS: -1.34 Total: 9.20 kcal
Atomic # 6 Polarization: -16.56 SS G_CDS: -2.85 Total: -19.41 kcal
Atomic # 7 Polarization: -16.77 SS G_CDS: 0.63 Total: -16.14 kcal
Atomic # 8 Polarization: -22.11 SS G_CDS: -0.82 Total: -22.93 kcal
Atomic # 14 Polarization: 15.64 SS G_CDS: -5.03 Total: 10.62 kcal
Atomic # 16 Polarization: 1.75 SS G_CDS: -2.30 Total: -0.55 kcal
Total LS contribution 4.02 Total: 4.02 kcal
Total: -27.51 -7.68 -35.18 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396362839.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.184 kcal
(2) G-P(sol) polarization free energy of solvation -27.505 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.689 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.368 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds