Wall clock time and date at job start Mon Mar 30 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32748 * 122.08898 * 2 1 4 4 S 1.75528 * 110.65247 * 180.02562 * 3 2 1 5 5 C 1.76023 * 91.49665 * 0.02562 * 4 3 2 6 6 C 1.39688 * 109.36163 * 359.74452 * 5 4 3 7 7 C 1.47877 * 118.03105 * 179.67916 * 6 5 4 8 8 C 1.40236 * 120.26173 * 180.26073 * 7 6 5 9 9 H 1.07998 * 119.99641 * 38.27647 * 8 7 6 10 10 C 1.40343 * 119.99886 * 218.26838 * 8 7 6 11 11 N 1.30604 * 120.00223 * 8.40323 * 10 8 7 12 12 Si 1.86808 * 120.00023 * 188.39414 * 10 8 7 13 13 H 1.48502 * 109.46943 * 90.00413 * 12 10 8 14 14 H 1.48503 * 109.47154 * 210.00541 * 12 10 8 15 15 H 1.48494 * 109.47019 * 330.00532 * 12 10 8 16 16 C 1.40634 * 119.47173 * 0.51983 * 7 6 5 17 17 C 1.36014 * 120.51055 * 359.71991 * 16 7 6 18 18 C 1.39778 * 121.07281 * 0.03950 * 17 16 7 19 19 C 1.47221 * 119.48290 * 179.97438 * 18 17 16 20 20 O 1.21546 * 119.99593 * 179.97438 * 19 18 17 21 21 O 1.34818 * 120.00138 * 359.97438 * 19 18 17 22 22 H 1.09006 * 109.47493 * 96.64370 * 1 2 3 23 23 H 1.08997 * 109.47620 * 336.64170 * 1 2 3 24 24 H 1.09004 * 109.46809 * 216.63609 * 1 2 3 25 25 H 1.07994 * 124.67433 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00124 * 179.97438 * 11 10 8 27 27 H 1.08008 * 119.74380 * 179.73531 * 16 7 6 28 28 H 1.08001 * 119.46002 * 180.02562 * 17 16 7 29 29 H 0.96695 * 117.00607 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2122 1.1247 0.0000 4 16 3.9326 0.7766 -0.0007 5 6 3.6288 -0.9572 -0.0018 6 6 2.2507 -1.1859 0.0043 7 6 1.7788 -2.5873 -0.0028 8 6 0.4054 -2.8705 -0.0026 9 1 -0.2725 -2.2572 -0.5778 10 6 -0.0882 -3.9509 0.7448 11 7 0.6998 -4.5905 1.5668 12 14 -1.8724 -4.4741 0.5642 13 1 -1.9836 -5.4902 -0.5131 14 1 -2.3497 -5.0558 1.8445 15 1 -2.7021 -3.2923 0.2176 16 6 2.7183 -3.6337 -0.0043 17 6 4.0516 -3.3647 -0.0049 18 6 4.5220 -2.0485 -0.0033 19 6 5.9727 -1.7975 -0.0035 20 8 6.3920 -0.6566 -0.0026 21 8 6.8360 -2.8330 -0.0047 22 1 -0.3634 -0.1189 -1.0208 23 1 -0.3634 0.9434 0.4074 24 1 -0.3633 -0.8247 0.6133 25 1 1.7861 2.1170 -0.0004 26 1 0.3586 -5.3370 2.0837 27 1 2.3785 -4.6590 -0.0051 28 1 4.7583 -4.1815 -0.0064 29 1 7.7789 -2.6186 -0.0043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396362839.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:32 Heat of formation + Delta-G solvation = -81.508595 kcal Electronic energy + Delta-G solvation = -16970.596115 eV Core-core repulsion = 14141.493507 eV Total energy + Delta-G solvation = -2829.102608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97229 -39.78610 -36.81294 -36.62682 -35.71538 -32.12901 -30.64524 -29.03834 -27.34126 -24.54765 -23.58616 -22.08533 -20.32950 -19.84338 -18.64744 -17.97614 -17.24752 -16.48248 -16.37251 -16.11687 -15.74357 -15.08967 -14.78844 -14.40356 -14.01656 -13.68666 -13.48448 -13.25485 -13.00208 -12.88643 -12.72624 -12.38709 -12.25868 -11.93538 -11.72498 -11.71167 -11.44355 -11.19848 -10.95599 -9.90432 -9.20194 -8.89793 -8.50741 -6.57358 0.06351 0.33097 0.94774 1.38732 1.42434 1.47831 1.57329 1.66063 2.00141 2.13722 2.50627 2.63049 3.41499 4.18185 4.32940 4.43278 4.65904 4.69609 4.81581 4.89753 4.97671 4.99084 5.21659 5.25107 5.39825 5.57727 5.71588 5.82941 5.88279 5.90986 6.00995 6.38424 6.53162 6.68162 7.26411 8.03871 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.008040 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.203178 B = 3481.657435 C = 4640.209986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.053 4.053 3 C -0.286 4.286 4 S 0.073 5.927 5 C -0.057 4.057 6 C -0.204 4.204 7 C 0.150 3.850 8 C -0.422 4.422 9 H 0.113 0.887 10 C 0.034 3.966 11 N -0.784 5.784 12 Si 0.991 3.009 13 H -0.258 1.258 14 H -0.268 1.268 15 H -0.245 1.245 16 C -0.212 4.212 17 C -0.008 4.008 18 C -0.281 4.281 19 C 0.525 3.475 20 O -0.572 6.572 21 O -0.512 6.512 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.180 0.820 26 H 0.303 0.697 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 0.572 -1.452 3.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.064 4.064 3 C -0.419 4.419 4 S 0.337 5.663 5 C -0.174 4.174 6 C -0.211 4.211 7 C 0.144 3.856 8 C -0.448 4.448 9 H 0.131 0.869 10 C -0.187 4.187 11 N -0.406 5.406 12 Si 0.810 3.190 13 H -0.182 1.182 14 H -0.192 1.192 15 H -0.168 1.168 16 C -0.233 4.233 17 C -0.029 4.029 18 C -0.290 4.290 19 C 0.377 3.623 20 O -0.468 6.468 21 O -0.325 6.325 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.197 0.803 26 H 0.115 0.885 27 H 0.133 0.867 28 H 0.145 0.855 29 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -1.639 1.566 -1.259 2.593 hybrid contribution -0.672 -1.095 0.179 1.297 sum -2.311 0.471 -1.080 2.594 Atomic orbital electron populations 1.20794 0.88795 1.03126 1.02636 1.18764 0.98150 0.90512 0.99010 1.25159 0.96062 1.02116 1.18539 1.84036 1.05564 0.98242 1.78421 1.22667 0.96510 0.96392 1.01840 1.19456 0.90656 0.94763 1.16272 1.18973 0.94425 0.88259 0.83918 1.20359 0.93173 1.09708 1.21519 0.86881 1.27125 1.05670 0.93501 0.92441 1.69720 1.40285 1.15328 1.15256 0.85025 0.74745 0.80040 0.79216 1.18198 1.19208 1.16809 1.20664 0.92017 0.98745 1.11881 1.20606 0.96012 0.93971 0.92289 1.17576 0.87404 0.93008 1.30989 1.20838 0.87765 0.81872 0.71846 1.90736 1.80009 1.24276 1.51825 1.84556 1.22760 1.38799 1.86374 0.90787 0.90591 0.90591 0.80301 0.88532 0.86694 0.85495 0.71924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.24 8.56 71.24 0.61 -2.63 15 2 C -0.05 -2.25 5.81 -20.62 -0.12 -2.37 15 3 C -0.29 -11.17 10.81 66.64 0.72 -10.45 15 4 S 0.07 3.19 21.38 -56.49 -1.21 1.98 15 5 C -0.06 -2.84 6.33 23.30 0.15 -2.69 15 6 C -0.20 -9.91 6.01 -19.95 -0.12 -10.03 15 7 C 0.15 7.35 5.61 -19.65 -0.11 7.24 15 8 C -0.42 -18.75 7.00 23.27 0.16 -18.59 15 9 H 0.11 4.60 5.85 -2.91 -0.02 4.59 15 10 C 0.03 1.42 5.24 85.39 0.45 1.86 15 11 N -0.78 -34.68 11.36 21.89 0.25 -34.43 15 12 Si 0.99 30.52 29.57 68.60 2.03 32.55 15 13 H -0.26 -7.76 7.11 99.48 0.71 -7.06 15 14 H -0.27 -8.03 7.11 99.48 0.71 -7.32 15 15 H -0.25 -7.14 7.11 99.48 0.71 -6.44 15 16 C -0.21 -10.22 8.51 22.34 0.19 -10.03 15 17 C -0.01 -0.38 9.46 22.13 0.21 -0.17 15 18 C -0.28 -13.54 5.90 -19.86 -0.12 -13.66 15 19 C 0.53 23.03 8.25 70.18 0.58 23.61 15 20 O -0.57 -26.87 15.70 19.69 0.31 -26.56 15 21 O -0.51 -17.47 12.59 -57.30 -0.72 -18.19 15 22 H 0.07 2.32 7.97 -2.38 -0.02 2.30 15 23 H 0.08 2.14 8.07 -2.39 -0.02 2.12 15 24 H 0.08 2.78 5.84 -2.38 -0.01 2.77 15 25 H 0.18 5.62 8.06 -2.91 -0.02 5.60 15 26 H 0.30 11.89 8.29 -92.71 -0.77 11.12 15 27 H 0.12 5.49 6.83 -2.91 -0.02 5.47 15 28 H 0.13 5.18 7.51 -2.91 -0.02 5.16 15 29 H 0.42 9.54 9.11 -74.06 -0.67 8.87 15 Total: -1.00 -59.18 266.95 3.80 -55.38 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.54 Total: 27.17 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 2.60 Total: -37.91 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.25 Total: -34.43 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.41 Total: -44.75 kcal Atomic # 14 Polarization: 30.52 SS G_CDS: 2.03 Total: 32.55 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.21 Total: 1.98 kcal Total: -59.18 3.80 -55.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396362839.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.124 kcal (2) G-P(sol) polarization free energy of solvation -59.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds