Wall clock time and date at job start Mon Mar 30 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35665 * 117.00159 * 2 1 4 4 C 1.37633 * 119.63398 * 5.27132 * 3 2 1 5 5 C 1.40388 * 120.36380 * 180.02562 * 4 3 2 6 6 C 1.40224 * 120.15556 * 180.25436 * 5 4 3 7 7 H 1.08000 * 120.00591 * 151.64659 * 6 5 4 8 8 C 1.40383 * 120.00119 * 331.65388 * 6 5 4 9 9 N 1.30578 * 120.00149 * 164.04080 * 8 6 5 10 10 Si 1.86801 * 119.99545 * 344.03557 * 8 6 5 11 11 H 1.48498 * 109.46986 * 95.32948 * 10 8 6 12 12 H 1.48502 * 109.47305 * 215.32530 * 10 8 6 13 13 H 1.48497 * 109.47540 * 335.32787 * 10 8 6 14 14 C 1.48009 * 119.69209 * 359.97438 * 5 4 3 15 15 C 1.40058 * 129.06218 * 180.02562 * 14 5 4 16 16 C 1.32712 * 115.82414 * 179.97438 * 15 14 5 17 17 S 1.75520 * 110.62220 * 359.97438 * 16 15 14 18 18 C 1.39481 * 118.26562 * 359.97438 * 14 5 4 19 19 C 1.40539 * 119.63506 * 185.24912 * 3 2 1 20 20 C 1.46222 * 119.53115 * 359.97438 * 19 3 2 21 21 O 1.21397 * 120.00117 * 179.97438 * 20 19 3 22 22 H 1.08995 * 109.47302 * 301.21062 * 1 2 3 23 23 H 1.09008 * 109.46922 * 61.20347 * 1 2 3 24 24 H 1.08996 * 109.47631 * 181.20807 * 1 2 3 25 25 H 1.08002 * 119.81601 * 0.02562 * 4 3 2 26 26 H 0.97005 * 119.99706 * 179.97438 * 9 8 6 27 27 H 1.08006 * 122.09001 * 359.97211 * 15 14 5 28 28 H 1.08001 * 124.69013 * 179.97438 * 16 15 14 29 29 H 1.08003 * 120.00240 * 359.97438 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2925 2.3560 0.1099 5 6 1.9140 3.6148 0.1110 6 6 1.1436 4.7806 0.2286 7 1 1.5692 5.6663 0.6766 8 6 -0.1811 4.7964 -0.2360 9 7 -0.9937 5.7467 0.1404 10 14 -0.7811 3.4579 -1.3926 11 1 -1.4505 2.3894 -0.6082 12 1 -1.7447 4.0373 -2.3627 13 1 0.3747 2.8829 -2.1265 14 6 3.3866 3.7056 -0.0062 15 6 4.2020 4.8442 -0.0256 16 6 5.5049 4.6203 -0.1415 17 16 5.8300 2.8982 -0.2391 18 6 4.1148 2.5209 -0.1146 19 6 3.4443 1.2757 -0.1118 20 6 4.2181 0.0402 -0.2261 21 8 5.4272 0.0881 -0.3235 22 1 -0.3633 0.5325 0.8789 23 1 -0.3633 0.4951 -0.9007 24 1 -0.3634 -1.0274 0.0217 25 1 0.2181 2.2873 0.1958 26 1 -1.9089 5.7578 -0.1809 27 1 3.7957 5.8421 0.0492 28 1 6.2607 5.3912 -0.1717 29 1 3.7139 -0.9149 -0.2238 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396362905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:49 Heat of formation + Delta-G solvation = -37.549320 kcal Electronic energy + Delta-G solvation = -17170.711264 eV Core-core repulsion = 14343.514873 eV Total energy + Delta-G solvation = -2827.196390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.51010 -37.72758 -37.20549 -34.64722 -33.20624 -31.12524 -28.06366 -27.28042 -26.06041 -23.31049 -21.88037 -20.61768 -19.47991 -18.49346 -17.08200 -16.15210 -15.69314 -15.43330 -15.19912 -14.82450 -14.24469 -13.99787 -13.39881 -13.22654 -13.16160 -12.50630 -12.28881 -12.04363 -11.70309 -11.42157 -11.33549 -11.27765 -11.06364 -10.34374 -10.26479 -9.99605 -9.74044 -9.29795 -8.63573 -8.50600 -7.63292 -7.32190 -6.99246 -5.09079 1.62205 1.91390 2.49173 2.64777 2.83300 2.90525 3.03429 3.06493 3.53277 3.57687 3.80803 4.15292 4.96133 5.33979 5.41540 5.46435 5.64067 5.72538 5.91461 6.10699 6.13243 6.24996 6.38109 6.59588 6.79257 6.84590 7.08453 7.23900 7.36757 7.43595 7.62517 7.78455 8.10748 8.23012 8.49989 9.32153 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.010172 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.585421 B = 2751.888116 C = 4033.171288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.249 3.751 4 C -0.365 4.365 5 C 0.162 3.838 6 C -0.374 4.374 7 H 0.107 0.893 8 C 0.077 3.923 9 N -0.755 5.755 10 Si 0.919 3.081 11 H -0.262 1.262 12 H -0.284 1.284 13 H -0.233 1.233 14 C -0.189 4.189 15 C -0.067 4.067 16 C -0.295 4.295 17 S 0.106 5.894 18 C -0.013 4.013 19 C -0.332 4.332 20 C 0.382 3.618 21 O -0.512 6.512 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.300 0.700 27 H 0.127 0.873 28 H 0.148 0.852 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -3.999 -1.279 4.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.200 3.800 4 C -0.386 4.386 5 C 0.156 3.844 6 C -0.398 4.398 7 H 0.124 0.876 8 C -0.151 4.151 9 N -0.374 5.374 10 Si 0.744 3.256 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.156 1.156 14 C -0.197 4.197 15 C -0.097 4.097 16 C -0.429 4.429 17 S 0.369 5.631 18 C -0.130 4.130 19 C -0.340 4.340 20 C 0.249 3.751 21 O -0.395 6.395 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.111 0.889 27 H 0.145 0.855 28 H 0.166 0.834 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.307 -4.716 -1.436 4.940 hybrid contribution -2.298 0.784 -0.162 2.433 sum -1.991 -3.932 -1.598 4.688 Atomic orbital electron populations 1.23097 0.79050 1.03038 1.01623 1.85868 1.20871 1.28524 1.88120 1.18513 0.90493 0.82975 0.87974 1.20535 0.98463 0.91977 1.27607 1.18227 0.89117 0.91938 0.85142 1.19886 0.94308 0.98993 1.26641 0.87553 1.26625 0.95686 0.96949 0.95799 1.69531 1.06816 1.29337 1.31705 0.86189 0.79942 0.79514 0.79927 1.18773 1.21078 1.15597 1.18987 0.93569 0.90960 1.16196 1.19637 0.92083 0.98701 0.99246 1.25042 0.99439 0.99892 1.18480 1.84170 1.03974 0.98599 1.76327 1.22275 0.95733 0.95498 0.99511 1.18250 0.90026 0.93195 1.32578 1.23126 0.88402 0.92414 0.71139 1.90411 1.17373 1.90304 1.41384 0.92481 0.93144 0.88669 0.86729 0.88885 0.85533 0.83387 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.74 101.05 0.98 1.38 15 2 O -0.32 -5.92 9.55 -18.70 -0.18 -6.09 15 3 C 0.25 5.36 6.66 -38.94 -0.26 5.10 15 4 C -0.36 -8.09 5.98 -38.99 -0.23 -8.32 15 5 C 0.16 3.83 5.36 -104.34 -0.56 3.27 15 6 C -0.37 -8.80 9.32 -38.03 -0.35 -9.16 15 7 H 0.11 2.57 7.73 -52.49 -0.41 2.16 15 8 C 0.08 1.70 5.44 -17.28 -0.09 1.61 15 9 N -0.75 -16.83 13.92 55.57 0.77 -16.06 15 10 Si 0.92 17.81 23.40 -169.99 -3.98 13.83 15 11 H -0.26 -4.63 6.17 56.52 0.35 -4.28 15 12 H -0.28 -5.26 7.11 56.52 0.40 -4.86 15 13 H -0.23 -4.83 6.67 56.52 0.38 -4.45 15 14 C -0.19 -4.44 6.02 -104.75 -0.63 -5.07 15 15 C -0.07 -1.42 9.75 -40.78 -0.40 -1.81 15 16 C -0.30 -5.73 11.12 28.85 0.32 -5.41 15 17 S 0.11 2.22 21.36 -107.50 -2.30 -0.07 15 18 C -0.01 -0.30 6.33 -37.90 -0.24 -0.54 15 19 C -0.33 -7.52 5.91 -104.61 -0.62 -8.14 15 20 C 0.38 8.01 11.13 33.94 0.38 8.39 15 21 O -0.51 -11.76 15.71 5.46 0.09 -11.67 15 22 H 0.06 0.83 7.32 -51.93 -0.38 0.45 15 23 H 0.05 0.75 6.36 -51.92 -0.33 0.42 15 24 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.12 2.38 2.48 -52.49 -0.13 2.25 15 26 H 0.30 5.90 8.29 -40.82 -0.34 5.57 15 27 H 0.13 2.48 7.76 -52.48 -0.41 2.07 15 28 H 0.15 2.40 8.06 -52.49 -0.42 1.98 15 29 H 0.08 1.44 7.54 -52.48 -0.40 1.04 15 LS Contribution 260.31 15.07 3.92 3.92 Total: -1.00 -26.41 260.31 -5.48 -31.89 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.11 Total: 2.96 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.70 Total: -18.70 kcal Atomic # 7 Polarization: -16.83 SS G_CDS: 0.77 Total: -16.06 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.09 Total: -17.76 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -3.98 Total: 13.83 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.30 Total: -0.07 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.41 -5.48 -31.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396362905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.658 kcal (2) G-P(sol) polarization free energy of solvation -26.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds