Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35995 * 116.99720 * 2 1 4 4 C 1.37696 * 119.66541 * 179.72709 * 3 2 1 5 5 C 1.41805 * 120.73658 * 180.27584 * 4 3 2 6 6 C 1.39861 * 128.39777 * 180.02562 * 5 4 3 7 7 C 1.36921 * 115.03881 * 179.97438 * 6 5 4 8 8 C 1.39863 * 124.82587 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00004 * 353.30071 * 8 7 6 10 10 C 1.40230 * 120.00102 * 173.30547 * 8 7 6 11 11 N 1.30733 * 119.99531 * 6.60459 * 10 8 7 12 12 Si 1.86798 * 119.99853 * 186.60498 * 10 8 7 13 13 H 1.48498 * 109.47034 * 94.98814 * 12 10 8 14 14 H 1.48504 * 109.46900 * 214.98313 * 12 10 8 15 15 H 1.48500 * 109.47489 * 334.98628 * 12 10 8 16 16 S 1.75451 * 110.34922 * 0.02562 * 7 6 5 17 17 C 1.40341 * 118.75529 * 359.97438 * 5 4 3 18 18 C 1.41279 * 119.79749 * 0.02562 * 17 5 4 19 19 C 1.46677 * 119.97112 * 179.97438 * 18 17 5 20 20 O 1.21321 * 120.00124 * 0.02562 * 19 18 17 21 21 C 1.38765 * 119.66947 * 359.97438 * 3 2 1 22 22 H 1.08996 * 109.46852 * 60.00403 * 1 2 3 23 23 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47120 * 299.99852 * 1 2 3 25 25 H 1.07999 * 119.63716 * 0.27363 * 4 3 2 26 26 H 1.08001 * 122.48603 * 359.97438 * 6 5 4 27 27 H 0.97009 * 119.99752 * 180.02562 * 11 10 8 28 28 H 1.08002 * 120.00374 * 180.02562 * 19 18 17 29 29 H 1.08002 * 120.00445 * 359.70417 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4218 1.2759 0.0057 5 6 4.0890 2.5271 0.0117 6 6 5.4650 2.7779 0.0174 7 6 5.8126 4.1022 0.0219 8 6 7.1259 4.5833 0.0274 9 1 7.9521 3.8965 0.1375 10 6 7.3699 5.9573 -0.1099 11 7 6.3715 6.8013 -0.1132 12 14 9.1214 6.5816 -0.2880 13 1 9.4463 6.7402 -1.7283 14 1 9.2513 7.8934 0.3960 15 1 10.0590 5.6078 0.3267 16 16 4.3764 5.1100 0.0197 17 6 3.3210 3.7018 0.0112 18 6 1.9107 3.6185 0.0053 19 6 1.1043 4.8437 0.0053 20 8 1.6485 5.9280 0.0099 21 6 1.2838 2.3711 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 3.9990 0.3630 0.0056 26 1 6.1990 1.9857 0.0182 27 1 6.5402 7.7519 -0.2086 28 1 0.0262 4.7807 0.0012 29 1 0.2057 2.3084 -0.0058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396363296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = -51.009133 kcal Electronic energy + Delta-G solvation = -16530.714163 eV Core-core repulsion = 13702.934111 eV Total energy + Delta-G solvation = -2827.780052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.42369 -38.26093 -36.84691 -34.79775 -32.86424 -30.31969 -28.87245 -26.91092 -25.49078 -24.14085 -21.88976 -20.48988 -19.34222 -17.85787 -16.83169 -16.12189 -16.05406 -15.27763 -14.95830 -14.72991 -14.40791 -13.74485 -13.64836 -13.36221 -12.62450 -12.29709 -12.29100 -11.91443 -11.71541 -11.42963 -11.22693 -11.11697 -10.64301 -10.48679 -10.19278 -10.08398 -9.39097 -9.24428 -8.74823 -8.24314 -7.44765 -7.23155 -6.33080 -4.75354 1.27624 2.22979 2.70801 2.82540 2.89465 3.04825 3.23567 3.55650 3.62832 3.79121 3.89598 4.54532 4.82215 4.98496 5.30232 5.38682 5.53158 5.61734 5.73285 6.17566 6.24923 6.48985 6.60129 6.80938 6.85510 6.98404 7.12600 7.36217 7.53594 7.74260 7.88690 8.02334 8.09214 8.24129 8.35077 9.59148 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.006049 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.347710 B = 4627.498567 C = 5463.274233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.328 6.328 3 C 0.116 3.884 4 C -0.164 4.164 5 C 0.040 3.960 6 C -0.369 4.369 7 C 0.037 3.963 8 C -0.374 4.374 9 H 0.100 0.900 10 C 0.051 3.949 11 N -0.765 5.765 12 Si 0.940 3.060 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.255 1.255 16 S 0.195 5.805 17 C -0.235 4.235 18 C -0.103 4.103 19 C 0.369 3.631 20 O -0.451 6.451 21 C -0.225 4.225 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.049 0.951 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.304 0.696 28 H 0.090 0.910 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 -3.365 -0.142 6.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.242 6.242 3 C 0.070 3.930 4 C -0.185 4.185 5 C 0.032 3.968 6 C -0.394 4.394 7 C -0.083 4.083 8 C -0.407 4.407 9 H 0.118 0.882 10 C -0.172 4.172 11 N -0.390 5.390 12 Si 0.763 3.237 13 H -0.187 1.187 14 H -0.195 1.195 15 H -0.179 1.179 16 S 0.456 5.544 17 C -0.351 4.351 18 C -0.110 4.110 19 C 0.228 3.772 20 O -0.325 6.325 21 C -0.246 4.246 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.068 0.932 25 H 0.131 0.869 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.855 -1.178 -0.143 5.974 hybrid contribution 0.549 -1.441 -0.108 1.546 sum -5.306 -2.619 -0.251 5.923 Atomic orbital electron populations 1.22870 0.79801 1.02709 1.00906 1.86025 1.20255 1.27907 1.90037 1.18253 0.91845 0.83125 0.99776 1.20063 0.90579 0.96841 1.11026 1.17751 0.93122 0.90797 0.95099 1.19530 0.92579 0.95040 1.32204 1.21807 0.97586 0.95177 0.93682 1.19403 0.92468 0.92475 1.36360 0.88182 1.26419 1.01461 0.96750 0.92579 1.68670 1.33530 1.05738 1.31108 0.85718 0.79284 0.78921 0.79809 1.18734 1.19457 1.17875 1.85548 0.91450 1.00761 1.76615 1.24049 0.96518 1.01954 1.12584 1.19753 0.92062 0.94245 1.04933 1.23906 0.94284 0.87529 0.71491 1.90525 1.76594 1.30865 1.34494 1.20713 0.98115 0.91280 1.14469 0.93220 0.89251 0.93204 0.86885 0.87368 0.88283 0.89353 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.80 101.05 0.99 1.38 15 2 O -0.33 -5.67 10.48 -19.72 -0.21 -5.88 15 3 C 0.12 2.30 6.65 -39.58 -0.26 2.04 15 4 C -0.16 -3.64 9.99 -38.42 -0.38 -4.02 15 5 C 0.04 0.99 5.85 -107.14 -0.63 0.37 15 6 C -0.37 -9.45 10.14 -39.45 -0.40 -9.85 15 7 C 0.04 0.97 6.10 -39.45 -0.24 0.73 15 8 C -0.37 -9.24 9.26 -38.23 -0.35 -9.59 15 9 H 0.10 2.31 7.86 -52.48 -0.41 1.90 15 10 C 0.05 1.16 5.49 -17.27 -0.09 1.06 15 11 N -0.77 -18.20 10.62 55.56 0.59 -17.61 15 12 Si 0.94 16.86 29.57 -169.99 -5.03 11.84 15 13 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 14 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 15 H -0.26 -4.49 7.11 56.52 0.40 -4.09 15 16 S 0.19 5.02 18.24 -107.50 -1.96 3.06 15 17 C -0.24 -5.79 6.34 -37.64 -0.24 -6.03 15 18 C -0.10 -2.18 5.89 -104.83 -0.62 -2.79 15 19 C 0.37 6.82 11.42 34.14 0.39 7.21 15 20 O -0.45 -9.94 15.75 5.52 0.09 -9.86 15 21 C -0.22 -4.16 8.75 -38.88 -0.34 -4.50 15 22 H 0.05 0.54 7.64 -51.93 -0.40 0.15 15 23 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.05 0.54 7.65 -51.93 -0.40 0.15 15 25 H 0.11 2.34 8.06 -52.49 -0.42 1.91 15 26 H 0.11 2.63 8.06 -52.49 -0.42 2.21 15 27 H 0.30 6.45 8.29 -40.82 -0.34 6.11 15 28 H 0.09 1.17 8.06 -52.49 -0.42 0.75 15 29 H 0.12 1.71 6.25 -52.49 -0.33 1.38 15 LS Contribution 271.68 15.07 4.09 4.09 Total: -1.00 -29.09 271.68 -6.96 -36.05 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -2.36 Total: 2.29 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -2.18 Total: -23.99 kcal Atomic # 7 Polarization: -18.20 SS G_CDS: 0.59 Total: -17.61 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.12 Total: -15.73 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.96 Total: 3.06 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.09 -6.96 -36.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396363296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.954 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds