Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35995 * 116.99720 * 2 1 4 4 C 1.37696 * 119.66541 * 179.72709 * 3 2 1 5 5 C 1.41805 * 120.73658 * 180.27584 * 4 3 2 6 6 C 1.39861 * 128.39777 * 180.02562 * 5 4 3 7 7 C 1.36921 * 115.03881 * 179.97438 * 6 5 4 8 8 C 1.39863 * 124.82587 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00004 * 353.30071 * 8 7 6 10 10 C 1.40230 * 120.00102 * 173.30547 * 8 7 6 11 11 N 1.30733 * 119.99531 * 6.60459 * 10 8 7 12 12 Si 1.86798 * 119.99853 * 186.60498 * 10 8 7 13 13 H 1.48498 * 109.47034 * 94.98814 * 12 10 8 14 14 H 1.48504 * 109.46900 * 214.98313 * 12 10 8 15 15 H 1.48500 * 109.47489 * 334.98628 * 12 10 8 16 16 S 1.75451 * 110.34922 * 0.02562 * 7 6 5 17 17 C 1.40341 * 118.75529 * 359.97438 * 5 4 3 18 18 C 1.41279 * 119.79749 * 0.02562 * 17 5 4 19 19 C 1.46677 * 119.97112 * 179.97438 * 18 17 5 20 20 O 1.21321 * 120.00124 * 0.02562 * 19 18 17 21 21 C 1.38765 * 119.66947 * 359.97438 * 3 2 1 22 22 H 1.08996 * 109.46852 * 60.00403 * 1 2 3 23 23 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47120 * 299.99852 * 1 2 3 25 25 H 1.07999 * 119.63716 * 0.27363 * 4 3 2 26 26 H 1.08001 * 122.48603 * 359.97438 * 6 5 4 27 27 H 0.97009 * 119.99752 * 180.02562 * 11 10 8 28 28 H 1.08002 * 120.00374 * 180.02562 * 19 18 17 29 29 H 1.08002 * 120.00445 * 359.70417 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4218 1.2759 0.0057 5 6 4.0890 2.5271 0.0117 6 6 5.4650 2.7779 0.0174 7 6 5.8126 4.1022 0.0219 8 6 7.1259 4.5833 0.0274 9 1 7.9521 3.8965 0.1375 10 6 7.3699 5.9573 -0.1099 11 7 6.3715 6.8013 -0.1132 12 14 9.1214 6.5816 -0.2880 13 1 9.4463 6.7402 -1.7283 14 1 9.2513 7.8934 0.3960 15 1 10.0590 5.6078 0.3267 16 16 4.3764 5.1100 0.0197 17 6 3.3210 3.7018 0.0112 18 6 1.9107 3.6185 0.0053 19 6 1.1043 4.8437 0.0053 20 8 1.6485 5.9280 0.0099 21 6 1.2838 2.3711 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 3.9990 0.3630 0.0056 26 1 6.1990 1.9857 0.0182 27 1 6.5402 7.7519 -0.2086 28 1 0.0262 4.7807 0.0012 29 1 0.2057 2.3084 -0.0058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396363296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = -68.652672 kcal Electronic energy + Delta-G solvation = -16531.479244 eV Core-core repulsion = 13702.934111 eV Total energy + Delta-G solvation = -2828.545133 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95067 -39.75781 -38.47955 -36.53609 -34.57162 -31.92700 -30.58120 -28.04990 -27.22125 -25.74194 -23.56786 -22.05664 -21.03291 -19.64884 -18.33249 -17.78521 -17.58871 -16.57932 -16.48923 -16.22955 -15.86574 -15.46544 -15.22803 -14.91989 -14.23138 -14.00141 -13.75725 -13.55986 -13.23986 -13.09959 -12.64388 -12.44929 -12.12079 -11.98739 -11.91838 -11.64475 -11.12394 -10.91017 -10.44450 -9.95537 -9.21178 -8.94807 -8.17654 -6.62438 -0.32212 0.49870 1.16883 1.32958 1.40814 1.53055 1.55728 1.93325 1.97314 2.12344 2.53141 2.81693 3.18642 3.45123 4.08065 4.20523 4.44613 4.54108 4.55962 4.70423 4.79926 4.85225 4.86590 5.13510 5.21863 5.28528 5.42194 5.52071 5.80195 5.92291 6.08933 6.37766 6.50521 6.58844 6.67034 7.91141 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.006049 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.347710 B = 4627.498567 C = 5463.274233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.124 3.876 4 C -0.183 4.183 5 C 0.017 3.983 6 C -0.401 4.401 7 C 0.012 3.988 8 C -0.407 4.407 9 H 0.104 0.896 10 C 0.014 3.986 11 N -0.794 5.794 12 Si 1.016 2.984 13 H -0.256 1.256 14 H -0.258 1.258 15 H -0.250 1.250 16 S 0.154 5.846 17 C -0.269 4.269 18 C -0.119 4.119 19 C 0.377 3.623 20 O -0.491 6.491 21 C -0.193 4.193 22 H 0.066 0.934 23 H 0.119 0.881 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.313 0.687 28 H 0.166 0.834 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 -3.924 -0.261 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.253 6.253 3 C 0.077 3.923 4 C -0.204 4.204 5 C 0.009 3.991 6 C -0.426 4.426 7 C -0.107 4.107 8 C -0.440 4.440 9 H 0.122 0.878 10 C -0.205 4.205 11 N -0.420 5.420 12 Si 0.834 3.166 13 H -0.181 1.181 14 H -0.182 1.182 15 H -0.174 1.174 16 S 0.415 5.585 17 C -0.384 4.384 18 C -0.125 4.125 19 C 0.238 3.762 20 O -0.367 6.367 21 C -0.213 4.213 22 H 0.085 0.915 23 H 0.137 0.863 24 H 0.085 0.915 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.182 0.818 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.432 -1.773 -0.258 8.621 hybrid contribution 0.999 -1.505 -0.065 1.808 sum -7.433 -3.278 -0.324 8.130 Atomic orbital electron populations 1.23359 0.76454 1.05475 1.02473 1.86040 1.23597 1.26304 1.89408 1.18325 0.91251 0.84846 0.97871 1.20221 0.92358 0.95997 1.11792 1.17929 0.92921 0.92174 0.96031 1.19680 0.93556 0.94940 1.34404 1.22105 0.98441 0.95536 0.94652 1.19734 0.92183 0.94024 1.38049 0.87822 1.27437 1.05939 0.95968 0.91187 1.68747 1.35702 1.06453 1.31062 0.84642 0.73419 0.78578 0.79998 1.18075 1.18153 1.17351 1.85317 0.92531 1.02618 1.78055 1.24221 0.98345 1.00738 1.15123 1.20410 0.91024 0.96955 1.04088 1.24776 0.96736 0.85465 0.69228 1.90536 1.77832 1.32146 1.36167 1.21266 1.00681 0.89378 1.09958 0.91500 0.86304 0.91497 0.86625 0.87857 0.87334 0.81811 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 113.37 1.11 1.41 15 2 O -0.34 -10.46 10.48 -93.49 -0.98 -11.44 15 3 C 0.12 4.60 6.65 22.27 0.15 4.74 15 4 C -0.18 -8.15 9.99 23.02 0.23 -7.92 15 5 C 0.02 0.88 5.85 -21.49 -0.13 0.75 15 6 C -0.40 -22.04 10.14 22.35 0.23 -21.82 15 7 C 0.01 0.66 6.10 22.35 0.14 0.80 15 8 C -0.41 -21.33 9.26 23.15 0.21 -21.12 15 9 H 0.10 5.11 7.86 -2.91 -0.02 5.09 15 10 C 0.01 0.67 5.49 85.34 0.47 1.14 15 11 N -0.79 -39.28 10.62 21.88 0.23 -39.05 15 12 Si 1.02 34.87 29.57 68.60 2.03 36.90 15 13 H -0.26 -8.49 7.11 99.48 0.71 -7.79 15 14 H -0.26 -8.26 7.11 99.48 0.71 -7.55 15 15 H -0.25 -8.29 7.11 99.48 0.71 -7.59 15 16 S 0.15 8.39 18.24 -56.49 -1.03 7.36 15 17 C -0.27 -13.54 6.34 23.53 0.15 -13.39 15 18 C -0.12 -4.74 5.89 -20.00 -0.12 -4.86 15 19 C 0.38 12.71 11.42 70.03 0.80 13.51 15 20 O -0.49 -21.24 15.75 -3.16 -0.05 -21.29 15 21 C -0.19 -6.30 8.75 22.73 0.20 -6.10 15 22 H 0.07 1.03 7.64 -2.39 -0.02 1.02 15 23 H 0.12 1.52 8.14 -2.39 -0.02 1.50 15 24 H 0.07 1.04 7.65 -2.39 -0.02 1.02 15 25 H 0.12 4.91 8.06 -2.91 -0.02 4.88 15 26 H 0.10 5.48 8.06 -2.91 -0.02 5.45 15 27 H 0.31 13.66 8.29 -92.70 -0.77 12.89 15 28 H 0.17 3.19 8.06 -2.91 -0.02 3.16 15 29 H 0.17 3.71 6.25 -2.91 -0.02 3.69 15 Total: -1.00 -69.40 271.68 4.82 -64.58 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.18 Total: 15.78 kcal Atomic # 6 Polarization: -56.28 SS G_CDS: 3.44 Total: -52.84 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.23 Total: -39.05 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.03 Total: -32.73 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Atomic # 16 Polarization: 8.39 SS G_CDS: -1.03 Total: 7.36 kcal Total: -69.40 4.82 -64.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396363296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.076 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds