Wall clock time and date at job start Mon Mar 30 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35684 * 117.00399 * 2 1 4 4 C 1.38146 * 120.15176 * 0.02562 * 3 2 1 5 5 C 1.38773 * 120.30147 * 180.02562 * 4 3 2 6 6 F 1.35094 * 119.69546 * 179.97438 * 5 4 3 7 7 C 1.38815 * 120.60904 * 359.97438 * 5 4 3 8 8 C 1.38101 * 120.29861 * 359.97438 * 7 5 4 9 9 O 1.35693 * 120.15119 * 180.02562 * 8 7 5 10 10 C 1.42899 * 117.00242 * 0.02562 * 9 8 7 11 11 F 1.39897 * 109.47129 * 299.99731 * 10 9 8 12 12 F 1.39904 * 109.47107 * 59.99950 * 10 9 8 13 13 C 1.41305 * 120.15993 * 179.72722 * 3 2 1 14 14 C 1.40953 * 120.29393 * 359.97350 * 13 3 2 15 15 H 1.08000 * 119.99607 * 38.58198 * 14 13 3 16 16 C 1.39874 * 119.99990 * 218.57734 * 14 13 3 17 17 N 1.30944 * 120.00156 * 20.24755 * 16 14 13 18 18 Si 1.86796 * 119.99725 * 200.24871 * 16 14 13 19 19 H 1.48499 * 109.47670 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47337 * 120.00168 * 18 16 14 21 21 H 1.48501 * 109.47063 * 240.00130 * 18 16 14 22 22 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46702 * 59.99934 * 1 2 3 24 24 H 1.08993 * 109.46930 * 299.99779 * 1 2 3 25 25 H 1.07999 * 119.84833 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.84711 * 179.97438 * 7 5 4 27 27 H 1.08999 * 109.47212 * 179.97438 * 10 9 8 28 28 H 0.96999 * 120.00253 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2959 2.3695 0.0005 5 6 1.9227 3.6076 0.0000 6 9 1.1781 4.7348 0.0000 7 6 3.3079 3.6985 -0.0005 8 6 4.0812 2.5543 0.0000 9 8 5.4350 2.6467 0.0000 10 6 5.9956 3.9611 0.0000 11 9 5.5720 4.6488 -1.1423 12 9 5.5720 4.6488 1.1423 13 6 3.4560 1.2867 0.0058 14 6 4.2329 0.1106 0.0122 15 1 3.9229 -0.7444 -0.5702 16 6 5.4053 0.0511 0.7727 17 7 5.5863 0.8880 1.7634 18 14 6.7128 -1.2223 0.3751 19 1 6.2704 -2.0416 -0.7817 20 1 7.9856 -0.5361 0.0370 21 1 6.9222 -2.1014 1.5535 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 0.2173 2.3131 0.0014 26 1 3.7829 4.6685 -0.0014 27 1 7.0834 3.8921 0.0004 28 1 6.3992 0.8465 2.2911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575659108.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:25 Heat of formation + Delta-G solvation = -202.864893 kcal Electronic energy + Delta-G solvation = -20392.235004 eV Core-core repulsion = 16573.260381 eV Total energy + Delta-G solvation = -3818.974623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.59651 -47.69839 -46.59116 -39.01600 -37.69816 -34.97875 -33.50722 -29.83832 -28.69966 -26.71842 -25.54663 -24.50771 -21.28393 -21.13258 -18.40298 -17.87325 -17.12470 -16.90102 -16.47840 -15.70424 -15.14780 -14.88171 -14.46178 -14.34426 -14.31911 -13.83673 -13.57441 -13.30684 -13.00234 -12.77867 -12.73872 -12.29774 -11.86554 -11.49088 -11.36319 -11.18597 -11.05601 -10.71241 -10.61177 -10.28720 -9.82572 -9.59771 -9.02965 -7.24511 -7.18469 -6.74788 -4.29445 2.46107 2.54909 3.08648 3.11784 3.18292 3.54999 3.99463 4.11120 4.48707 4.52361 5.03376 5.18076 5.46499 5.50357 5.68660 5.73605 5.84860 5.99970 6.04505 6.33395 6.47100 7.13245 7.21144 7.37277 7.42545 7.51402 8.01841 8.28450 8.49640 8.75796 8.88044 10.23488 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.014675 B = 0.012234 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.557855 B = 2288.178096 C = 3887.267060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.071 3.929 4 C -0.226 4.226 5 C 0.027 3.973 6 F -0.164 7.164 7 C -0.215 4.215 8 C 0.084 3.916 9 O -0.270 6.270 10 C 0.401 3.599 11 F -0.213 7.213 12 F -0.206 7.206 13 C 0.089 3.911 14 C -0.446 4.446 15 H 0.087 0.913 16 C 0.083 3.917 17 N -0.774 5.774 18 Si 0.906 3.094 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.277 1.277 22 H 0.087 0.913 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.161 0.839 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 1.422 -2.021 2.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.214 6.214 3 C 0.025 3.975 4 C -0.246 4.246 5 C 0.006 3.994 6 F -0.143 7.143 7 C -0.235 4.235 8 C 0.039 3.961 9 O -0.186 6.186 10 C 0.309 3.691 11 F -0.196 7.196 12 F -0.188 7.188 13 C 0.085 3.915 14 C -0.475 4.475 15 H 0.105 0.895 16 C -0.136 4.136 17 N -0.399 5.399 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.203 1.203 22 H 0.105 0.895 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.132 0.868 26 H 0.136 0.864 27 H 0.177 0.823 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.459 1.201 -1.825 2.233 hybrid contribution 0.125 0.330 0.058 0.357 sum 0.584 1.531 -1.767 2.410 Atomic orbital electron populations 1.22836 0.80973 1.02287 1.00338 1.86012 1.18739 1.26957 1.89648 1.18393 0.91228 0.82578 1.05271 1.20543 0.98818 0.91480 1.13788 1.16458 0.87844 0.80902 1.14150 1.91312 1.76971 1.50686 1.95336 1.20828 0.93086 0.97787 1.11824 1.18127 0.80004 0.92651 1.05277 1.86724 1.20359 1.23420 1.88061 1.23241 0.97114 0.77121 0.71576 1.93034 1.92560 1.81197 1.52767 1.93046 1.92422 1.80956 1.52414 1.16094 0.87574 0.91399 0.96386 1.19111 1.04767 0.99110 1.24513 0.89523 1.25715 0.98289 0.96333 0.93241 1.69802 1.25396 1.32689 1.11973 0.86289 0.80459 0.80688 0.79461 1.18437 1.19819 1.20262 0.89476 0.93834 0.93728 0.86831 0.86421 0.82285 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 15 2 O -0.30 -6.67 9.94 -18.76 -0.19 -6.86 15 3 C 0.07 1.72 6.71 -38.45 -0.26 1.46 15 4 C -0.23 -5.16 9.00 -39.42 -0.35 -5.52 15 5 C 0.03 0.64 7.31 -39.17 -0.29 0.35 15 6 F -0.16 -3.71 17.26 2.25 0.04 -3.68 15 7 C -0.22 -5.23 8.22 -39.42 -0.32 -5.55 15 8 C 0.08 2.13 5.96 -38.45 -0.23 1.90 15 9 O -0.27 -6.29 7.32 -18.78 -0.14 -6.43 15 10 C 0.40 7.47 5.98 101.05 0.60 8.07 15 11 F -0.21 -4.04 15.58 2.25 0.04 -4.00 15 12 F -0.21 -4.14 15.59 2.25 0.04 -4.10 15 13 C 0.09 2.34 5.38 -106.52 -0.57 1.77 15 14 C -0.45 -11.68 8.41 -37.94 -0.32 -12.00 15 15 H 0.09 2.24 7.91 -52.49 -0.42 1.83 15 16 C 0.08 2.06 4.40 -17.32 -0.08 1.98 15 17 N -0.77 -19.56 11.25 55.55 0.62 -18.93 15 18 Si 0.91 18.50 29.61 -169.99 -5.03 13.47 15 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 22 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.04 0.65 7.66 -51.93 -0.40 0.25 15 24 H 0.04 0.69 7.66 -51.93 -0.40 0.29 15 25 H 0.11 2.25 6.27 -52.49 -0.33 1.92 15 26 H 0.12 2.73 5.07 -52.49 -0.27 2.46 15 27 H 0.16 2.15 8.14 -51.93 -0.42 1.73 15 28 H 0.28 6.43 8.30 -40.82 -0.34 6.09 15 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -29.15 258.18 -3.34 -32.50 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -1.79 Total: 0.18 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.83 Total: -6.03 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.62 Total: -18.93 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.32 Total: -13.29 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 0.11 Total: -11.78 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.15 -3.34 -32.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659108.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.369 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds