Wall clock time and date at job start Mon Mar 30 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35684 * 117.00399 * 2 1 4 4 C 1.38146 * 120.15176 * 0.02562 * 3 2 1 5 5 C 1.38773 * 120.30147 * 180.02562 * 4 3 2 6 6 F 1.35094 * 119.69546 * 179.97438 * 5 4 3 7 7 C 1.38815 * 120.60904 * 359.97438 * 5 4 3 8 8 C 1.38101 * 120.29861 * 359.97438 * 7 5 4 9 9 O 1.35693 * 120.15119 * 180.02562 * 8 7 5 10 10 C 1.42899 * 117.00242 * 0.02562 * 9 8 7 11 11 F 1.39897 * 109.47129 * 299.99731 * 10 9 8 12 12 F 1.39904 * 109.47107 * 59.99950 * 10 9 8 13 13 C 1.41305 * 120.15993 * 179.72722 * 3 2 1 14 14 C 1.40953 * 120.29393 * 359.97350 * 13 3 2 15 15 H 1.08000 * 119.99607 * 38.58198 * 14 13 3 16 16 C 1.39874 * 119.99990 * 218.57734 * 14 13 3 17 17 N 1.30944 * 120.00156 * 20.24755 * 16 14 13 18 18 Si 1.86796 * 119.99725 * 200.24871 * 16 14 13 19 19 H 1.48499 * 109.47670 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47337 * 120.00168 * 18 16 14 21 21 H 1.48501 * 109.47063 * 240.00130 * 18 16 14 22 22 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46702 * 59.99934 * 1 2 3 24 24 H 1.08993 * 109.46930 * 299.99779 * 1 2 3 25 25 H 1.07999 * 119.84833 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.84711 * 179.97438 * 7 5 4 27 27 H 1.08999 * 109.47212 * 179.97438 * 10 9 8 28 28 H 0.96999 * 120.00253 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2959 2.3695 0.0005 5 6 1.9227 3.6076 0.0000 6 9 1.1781 4.7348 0.0000 7 6 3.3079 3.6985 -0.0005 8 6 4.0812 2.5543 0.0000 9 8 5.4350 2.6467 0.0000 10 6 5.9956 3.9611 0.0000 11 9 5.5720 4.6488 -1.1423 12 9 5.5720 4.6488 1.1423 13 6 3.4560 1.2867 0.0058 14 6 4.2329 0.1106 0.0122 15 1 3.9229 -0.7444 -0.5702 16 6 5.4053 0.0511 0.7727 17 7 5.5863 0.8880 1.7634 18 14 6.7128 -1.2223 0.3751 19 1 6.2704 -2.0416 -0.7817 20 1 7.9856 -0.5361 0.0370 21 1 6.9222 -2.1014 1.5535 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 0.2173 2.3131 0.0014 26 1 3.7829 4.6685 -0.0014 27 1 7.0834 3.8921 0.0004 28 1 6.3992 0.8465 2.2911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659108.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:25 Heat of formation + Delta-G solvation = -220.581702 kcal Electronic energy + Delta-G solvation = -20393.003262 eV Core-core repulsion = 16573.260381 eV Total energy + Delta-G solvation = -3819.742881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.11352 -49.54002 -48.11274 -40.76761 -39.38881 -36.72038 -35.34418 -31.66341 -30.48287 -28.17340 -27.21894 -26.20808 -23.11202 -22.86192 -20.11003 -19.58535 -18.66219 -18.59812 -18.13518 -17.43878 -16.90345 -16.55320 -16.16162 -16.06828 -16.02596 -15.52278 -15.15013 -14.98989 -14.57257 -14.47107 -14.40225 -13.91111 -13.47165 -13.10311 -13.06500 -12.79905 -12.65482 -12.40067 -12.17181 -12.00051 -11.58473 -11.32155 -10.83920 -9.05779 -9.05004 -8.55591 -6.20171 0.59781 0.70995 1.46422 1.49144 1.60514 2.01093 2.31608 2.63230 2.67534 2.95366 3.34391 3.60000 3.76819 3.93643 4.11653 4.23663 4.40483 4.48754 4.55197 4.66864 4.76261 5.27406 5.35535 5.53327 5.59476 5.76537 6.17900 6.42206 6.71945 6.90942 7.05936 8.45380 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.014675 B = 0.012234 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.557855 B = 2288.178096 C = 3887.267060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.322 6.322 3 C 0.066 3.934 4 C -0.227 4.227 5 C 0.020 3.980 6 F -0.158 7.158 7 C -0.229 4.229 8 C 0.078 3.922 9 O -0.288 6.288 10 C 0.395 3.605 11 F -0.216 7.216 12 F -0.216 7.216 13 C 0.051 3.949 14 C -0.477 4.477 15 H 0.076 0.924 16 C 0.050 3.950 17 N -0.802 5.802 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.260 1.260 21 H -0.271 1.271 22 H 0.119 0.881 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.143 0.857 26 H 0.123 0.877 27 H 0.216 0.784 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 1.081 -2.152 2.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.236 6.236 3 C 0.020 3.980 4 C -0.246 4.246 5 C 0.000 4.000 6 F -0.137 7.137 7 C -0.249 4.249 8 C 0.033 3.967 9 O -0.204 6.204 10 C 0.304 3.696 11 F -0.198 7.198 12 F -0.198 7.198 13 C 0.048 3.952 14 C -0.505 4.505 15 H 0.094 0.906 16 C -0.167 4.167 17 N -0.428 5.428 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.185 1.185 21 H -0.196 1.196 22 H 0.137 0.863 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.161 0.839 26 H 0.141 0.859 27 H 0.232 0.768 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.717 0.878 -1.956 2.261 hybrid contribution -0.082 0.480 0.098 0.497 sum 0.635 1.358 -1.858 2.387 Atomic orbital electron populations 1.23227 0.77849 1.04904 1.01378 1.85979 1.22001 1.26232 1.89401 1.18578 0.91171 0.83755 1.04500 1.20758 1.00283 0.90549 1.13028 1.16682 0.87992 0.81540 1.13809 1.91321 1.76734 1.50376 1.95271 1.20954 0.93485 0.97886 1.12560 1.18255 0.81035 0.92561 1.04888 1.86673 1.19414 1.26299 1.87973 1.24104 0.99122 0.75456 0.70907 1.93021 1.92820 1.81097 1.52904 1.93020 1.92739 1.81023 1.53051 1.16578 0.88929 0.92180 0.97552 1.19209 1.06476 0.99057 1.25797 0.90604 1.26414 0.99546 0.98195 0.92497 1.69833 1.26248 1.34152 1.12541 0.85294 0.77969 0.78202 0.79057 1.18796 1.18466 1.19606 0.86259 0.92401 0.92870 0.83900 0.85877 0.76767 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.81 113.37 1.11 1.75 15 2 O -0.32 -14.19 9.94 -90.03 -0.89 -15.08 15 3 C 0.07 3.21 6.71 23.00 0.15 3.37 15 4 C -0.23 -10.13 9.00 22.38 0.20 -9.93 15 5 C 0.02 0.94 7.31 22.54 0.16 1.11 15 6 F -0.16 -6.97 17.26 44.97 0.78 -6.20 15 7 C -0.23 -11.12 8.22 22.38 0.18 -10.94 15 8 C 0.08 3.96 5.96 23.00 0.14 4.09 15 9 O -0.29 -13.33 7.32 -90.12 -0.66 -13.99 15 10 C 0.39 14.17 5.98 113.37 0.68 14.85 15 11 F -0.22 -7.96 15.58 44.97 0.70 -7.26 15 12 F -0.22 -8.50 15.59 44.97 0.70 -7.80 15 13 C 0.05 2.72 5.38 -21.10 -0.11 2.60 15 14 C -0.48 -25.37 8.41 23.33 0.20 -25.17 15 15 H 0.08 4.03 7.91 -2.91 -0.02 4.01 15 16 C 0.05 2.47 4.40 85.22 0.37 2.85 15 17 N -0.80 -40.48 11.25 21.82 0.25 -40.24 15 18 Si 0.97 37.55 29.61 68.60 2.03 39.58 15 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 20 H -0.26 -9.42 7.11 99.48 0.71 -8.72 15 21 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 22 H 0.12 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.06 1.59 7.66 -2.39 -0.02 1.57 15 24 H 0.05 1.52 7.66 -2.39 -0.02 1.50 15 25 H 0.14 5.37 6.27 -2.91 -0.02 5.35 15 26 H 0.12 5.70 5.07 -2.91 -0.01 5.68 15 27 H 0.22 5.18 8.14 -2.39 -0.02 5.16 15 28 H 0.29 13.08 8.30 -92.71 -0.77 12.31 15 Total: -1.00 -62.85 258.18 7.21 -55.64 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.22 Total: 10.77 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 3.09 Total: -15.42 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.25 Total: -40.24 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -1.55 Total: -29.07 kcal Atomic # 9 Polarization: -23.43 SS G_CDS: 2.18 Total: -21.25 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -62.85 7.21 -55.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659108.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.943 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds