Wall clock time and date at job start Mon Mar 30 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36028 * 116.99746 * 2 1 4 4 C 1.39114 * 119.86417 * 359.97438 * 3 2 1 5 5 C 1.38375 * 120.57002 * 180.02562 * 4 3 2 6 6 C 1.38297 * 120.28215 * 359.97438 * 5 4 3 7 7 O 1.35723 * 120.13509 * 179.97438 * 6 5 4 8 8 C 1.42895 * 117.00522 * 359.97438 * 7 6 5 9 9 F 1.39901 * 109.47184 * 60.00109 * 8 7 6 10 10 F 1.39902 * 109.47069 * 300.00266 * 8 7 6 11 11 C 1.41322 * 119.71864 * 0.25151 * 6 5 4 12 12 C 1.41091 * 120.27587 * 179.74762 * 11 6 5 13 13 H 1.07997 * 120.00305 * 36.14610 * 12 11 6 14 14 C 1.39909 * 119.99920 * 216.14400 * 12 11 6 15 15 N 1.30894 * 119.99998 * 20.26338 * 14 12 11 16 16 Si 1.86800 * 119.99994 * 200.26362 * 14 12 11 17 17 H 1.48499 * 109.47189 * 94.79705 * 16 14 12 18 18 H 1.48506 * 109.46973 * 214.79581 * 16 14 12 19 19 H 1.48502 * 109.47164 * 334.79582 * 16 14 12 20 20 C 1.38187 * 119.85989 * 179.97438 * 3 2 1 21 21 F 1.35100 * 120.14739 * 359.97438 * 20 3 2 22 22 H 1.09000 * 109.47047 * 299.99864 * 1 2 3 23 23 H 1.08994 * 109.47630 * 59.99837 * 1 2 3 24 24 H 1.09006 * 109.47679 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.71265 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.85798 * 179.97438 * 5 4 3 27 27 H 1.08999 * 109.47142 * 180.02562 * 8 7 6 28 28 H 0.97006 * 120.00203 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2860 2.3769 -0.0005 5 6 1.8989 3.6175 -0.0011 6 6 3.2785 3.7138 -0.0006 7 8 3.8766 4.9321 -0.0016 8 6 3.0196 6.0756 -0.0038 9 9 2.2112 6.0547 1.1378 10 9 2.2131 6.0517 -1.1468 11 6 4.0628 2.5382 -0.0049 12 6 5.4712 2.6227 -0.0097 13 1 5.9670 3.4082 0.5412 14 6 6.2256 1.6888 -0.7283 15 7 5.6687 1.0001 -1.6921 16 14 8.0273 1.4247 -0.3121 17 1 8.1560 0.2825 0.6281 18 1 8.7845 1.1302 -1.5552 19 1 8.5740 2.6514 0.3216 20 6 3.4266 1.2811 0.0005 21 9 4.1626 0.1481 0.0016 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0277 0.0005 25 1 0.2079 2.3124 -0.0005 26 1 1.2974 4.5144 -0.0019 27 1 3.6240 6.9826 -0.0049 28 1 6.1918 0.3529 -2.1906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659147.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:39 Heat of formation + Delta-G solvation = -222.796431 kcal Electronic energy + Delta-G solvation = -20211.865759 eV Core-core repulsion = 16392.026840 eV Total energy + Delta-G solvation = -3819.838919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.10801 -48.95485 -48.11120 -40.68168 -39.54136 -37.04235 -35.35961 -31.80165 -30.42131 -28.13980 -27.11434 -26.48153 -23.29904 -22.65671 -19.91409 -19.56575 -18.97671 -18.67449 -18.21131 -17.40979 -16.94227 -16.66945 -16.50602 -15.73289 -15.51053 -15.34208 -15.15919 -14.83273 -14.59330 -14.41350 -14.32876 -13.95809 -13.52442 -13.19647 -12.96545 -12.86469 -12.62436 -12.59192 -12.21566 -12.02394 -11.60728 -11.37560 -10.94526 -9.38782 -8.77894 -8.58629 -6.45805 0.65282 0.72051 1.37629 1.47313 1.53199 2.05317 2.20238 2.52976 2.64409 2.73163 3.27456 3.72670 3.91805 3.93805 4.06902 4.40855 4.42964 4.44231 4.66605 4.73004 4.95748 5.14862 5.37274 5.42940 5.53580 5.80255 6.12642 6.34849 6.61005 6.74270 6.87845 8.27615 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.010533 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.419705 B = 2657.582924 C = 4225.359001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.344 6.344 3 C 0.089 3.911 4 C -0.259 4.259 5 C -0.136 4.136 6 C -0.015 4.015 7 O -0.323 6.323 8 C 0.402 3.598 9 F -0.214 7.214 10 F -0.216 7.216 11 C 0.076 3.924 12 C -0.480 4.480 13 H 0.091 0.909 14 C 0.034 3.966 15 N -0.809 5.809 16 Si 0.984 3.016 17 H -0.268 1.268 18 H -0.265 1.265 19 H -0.249 1.249 20 C -0.016 4.016 21 F -0.147 7.147 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.119 0.881 25 H 0.149 0.851 26 H 0.135 0.865 27 H 0.229 0.771 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 5.887 2.190 8.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.259 6.259 3 C 0.043 3.957 4 C -0.279 4.279 5 C -0.155 4.155 6 C -0.058 4.058 7 O -0.241 6.241 8 C 0.312 3.688 9 F -0.196 7.196 10 F -0.198 7.198 11 C 0.072 3.928 12 C -0.508 4.508 13 H 0.109 0.891 14 C -0.183 4.183 15 N -0.433 5.433 16 Si 0.804 3.196 17 H -0.193 1.193 18 H -0.189 1.189 19 H -0.172 1.172 20 C -0.038 4.038 21 F -0.126 7.126 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.137 0.863 25 H 0.166 0.834 26 H 0.152 0.848 27 H 0.245 0.755 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.930 5.527 1.989 7.668 hybrid contribution 0.151 -0.390 -0.112 0.433 sum -4.779 5.137 1.877 7.263 Atomic orbital electron populations 1.23259 0.76823 1.05041 1.01982 1.86040 1.23420 1.26820 1.89656 1.18915 0.90267 0.85604 1.00868 1.20463 0.99558 0.89992 1.17881 1.21021 0.92123 0.98706 1.03674 1.18681 0.90884 0.83875 1.12397 1.86451 1.35543 1.12617 1.89504 1.24204 0.80788 0.92939 0.70891 1.93028 1.76686 1.96975 1.52906 1.93028 1.76817 1.96980 1.52978 1.16962 0.94574 0.87407 0.93821 1.19475 0.90537 1.13072 1.27721 0.89129 1.26770 1.06076 0.93038 0.92446 1.69856 1.41070 1.18183 1.14184 0.85149 0.75508 0.79898 0.79012 1.19307 1.18927 1.17206 1.17019 0.85582 0.82514 1.18673 1.91263 1.77691 1.48968 1.94716 0.91806 0.92271 0.86290 0.83391 0.84761 0.75527 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 15 2 O -0.34 -15.22 10.35 -93.87 -0.97 -16.19 15 3 C 0.09 4.38 6.68 22.47 0.15 4.53 15 4 C -0.26 -11.18 9.04 22.51 0.20 -10.97 15 5 C -0.14 -6.01 8.25 22.32 0.18 -5.82 15 6 C -0.02 -0.75 6.52 23.04 0.15 -0.60 15 7 O -0.32 -13.77 9.85 -90.45 -0.89 -14.66 15 8 C 0.40 12.04 5.98 113.37 0.68 12.72 15 9 F -0.21 -6.74 15.58 44.97 0.70 -6.04 15 10 F -0.22 -7.07 15.58 44.97 0.70 -6.37 15 11 C 0.08 4.26 5.41 -21.17 -0.11 4.14 15 12 C -0.48 -26.61 8.49 23.38 0.20 -26.42 15 13 H 0.09 4.82 7.87 -2.91 -0.02 4.80 15 14 C 0.03 1.80 4.50 85.24 0.38 2.18 15 15 N -0.81 -45.11 11.12 21.82 0.24 -44.86 15 16 Si 0.98 39.98 29.61 68.60 2.03 42.01 15 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 19 H -0.25 -9.51 7.11 99.48 0.71 -8.80 15 20 C -0.02 -0.93 6.69 22.91 0.15 -0.77 15 21 F -0.15 -8.76 14.09 44.97 0.63 -8.13 15 22 H 0.06 1.66 7.65 -2.39 -0.02 1.64 15 23 H 0.06 1.60 7.65 -2.39 -0.02 1.58 15 24 H 0.12 2.69 8.14 -2.38 -0.02 2.67 15 25 H 0.15 5.14 6.26 -2.91 -0.02 5.13 15 26 H 0.13 5.21 5.07 -2.91 -0.01 5.19 15 27 H 0.23 3.88 8.14 -2.39 -0.02 3.86 15 28 H 0.29 14.76 8.30 -92.70 -0.77 13.99 15 Total: -1.00 -69.70 257.92 6.76 -62.94 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.22 Total: 10.52 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.10 Total: -19.21 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.24 Total: -44.86 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.86 Total: -30.85 kcal Atomic # 9 Polarization: -22.57 SS G_CDS: 2.03 Total: -20.53 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -69.70 6.76 -62.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659147.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.860 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds