Wall clock time and date at job start Mon Mar 30 2020 06:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35969 * 116.99754 * 2 1 4 4 C 1.37829 * 119.94523 * 359.97438 * 3 2 1 5 5 C 1.40785 * 119.80227 * 179.97438 * 4 3 2 6 6 C 1.41191 * 120.14630 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99530 * 334.55579 * 6 5 4 8 8 C 1.39862 * 120.00047 * 154.55145 * 6 5 4 9 9 N 1.30893 * 119.99874 * 343.03975 * 8 6 5 10 10 Si 1.86793 * 120.00163 * 163.03874 * 8 6 5 11 11 H 1.48499 * 109.47434 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47422 * 120.00222 * 10 8 6 13 13 H 1.48500 * 109.47318 * 240.00300 * 10 8 6 14 14 C 1.40863 * 119.70314 * 0.02562 * 5 4 3 15 15 C 1.37594 * 119.88738 * 0.02562 * 14 5 4 16 16 F 1.35099 * 119.90571 * 179.97438 * 15 14 5 17 17 C 1.39401 * 120.19436 * 359.73990 * 15 14 5 18 18 O 1.35787 * 119.85526 * 180.25455 * 17 15 14 19 19 C 1.42897 * 117.00022 * 270.26309 * 18 17 15 20 20 F 1.39906 * 109.47055 * 299.99413 * 19 18 17 21 21 F 1.39902 * 109.47318 * 59.99566 * 19 18 17 22 22 H 1.08997 * 109.47407 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47473 * 59.99753 * 1 2 3 24 24 H 1.09002 * 109.47131 * 299.99933 * 1 2 3 25 25 H 1.07997 * 120.09817 * 359.96159 * 4 3 2 26 26 H 0.96999 * 120.00471 * 179.97438 * 9 8 6 27 27 H 1.07994 * 120.05301 * 179.97438 * 14 5 4 28 28 H 1.08999 * 109.46591 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2944 2.3667 -0.0005 5 6 1.9367 3.6195 0.0000 6 6 1.1736 4.8075 -0.0011 7 1 0.1716 4.8052 -0.4041 8 6 1.7153 5.9870 0.5198 9 7 2.7680 5.9368 1.2962 10 14 0.9366 7.6341 0.1077 11 1 -0.2333 7.4200 -0.7816 12 1 0.4915 8.2983 1.3590 13 1 1.9321 8.4937 -0.5818 14 6 3.3439 3.6825 0.0006 15 6 4.0822 2.5214 0.0000 16 9 5.4318 2.5814 0.0000 17 6 3.4416 1.2833 0.0044 18 8 4.1770 0.1418 0.0091 19 6 4.5338 -0.4052 -1.2619 20 9 3.3730 -0.7089 -1.9814 21 9 5.2935 0.5285 -1.9748 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 0.2159 2.3109 -0.0016 26 1 3.1439 6.7548 1.6572 27 1 3.8424 4.6405 0.0006 28 1 5.1188 -1.3132 -1.1153 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659174.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:20 Heat of formation + Delta-G solvation = -236.766271 kcal Electronic energy + Delta-G solvation = -20176.197916 eV Core-core repulsion = 16355.753219 eV Total energy + Delta-G solvation = -3820.444697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.89928 -49.65826 -47.99997 -40.85252 -38.71973 -37.94697 -35.19826 -31.44610 -30.42403 -28.36872 -27.61689 -25.85944 -23.14099 -22.81126 -20.02581 -19.64943 -18.94109 -18.68175 -18.05438 -17.50982 -17.03205 -16.74665 -16.47625 -16.26313 -16.14119 -15.36766 -14.97660 -14.87870 -14.42836 -14.27504 -14.19002 -13.76601 -13.60309 -13.16423 -12.90066 -12.86745 -12.77192 -12.38441 -12.20125 -11.75058 -11.68972 -11.55160 -10.99932 -9.48696 -9.01580 -8.83280 -6.61855 0.39725 0.80285 1.39090 1.44022 1.56991 2.13605 2.24032 2.41049 2.63900 2.86658 3.39311 3.72673 3.88373 3.94985 4.40007 4.46305 4.48528 4.58782 4.76052 4.78491 4.85492 5.06513 5.13351 5.53917 5.70537 5.89999 6.15326 6.28450 6.48736 6.66267 6.85910 8.11357 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.007274 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.390328 B = 3848.380933 C = 4607.498251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.324 6.324 3 C 0.182 3.818 4 C -0.321 4.321 5 C 0.133 3.867 6 C -0.459 4.459 7 H 0.100 0.900 8 C 0.034 3.966 9 N -0.803 5.803 10 Si 0.994 3.006 11 H -0.249 1.249 12 H -0.262 1.262 13 H -0.265 1.265 14 C -0.240 4.240 15 C 0.132 3.868 16 F -0.151 7.151 17 C -0.151 4.151 18 O -0.317 6.317 19 C 0.378 3.622 20 F -0.217 7.217 21 F -0.226 7.226 22 H 0.125 0.875 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.134 0.866 26 H 0.298 0.702 27 H 0.121 0.879 28 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -5.698 -2.667 6.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.237 6.237 3 C 0.136 3.864 4 C -0.341 4.341 5 C 0.130 3.870 6 C -0.485 4.485 7 H 0.118 0.882 8 C -0.185 4.185 9 N -0.426 5.426 10 Si 0.813 3.187 11 H -0.172 1.172 12 H -0.187 1.187 13 H -0.190 1.190 14 C -0.261 4.261 15 C 0.112 3.888 16 F -0.129 7.129 17 C -0.196 4.196 18 O -0.236 6.236 19 C 0.289 3.711 20 F -0.199 7.199 21 F -0.208 7.208 22 H 0.143 0.857 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.152 0.848 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.185 -5.850 -2.391 6.687 hybrid contribution 0.052 0.986 -0.285 1.027 sum -2.132 -4.864 -2.675 5.947 Atomic orbital electron populations 1.23266 0.76926 1.05091 1.01806 1.86002 1.23050 1.26297 1.88353 1.18649 0.89945 0.84920 0.92931 1.21141 0.99417 0.90906 1.22682 1.17536 0.90875 0.93220 0.85388 1.20053 1.01984 0.92999 1.33491 0.88221 1.27046 0.94538 1.05455 0.91490 1.69896 1.19319 1.32997 1.20371 0.84971 0.79366 0.74870 0.79513 1.17219 1.18675 1.18976 1.21127 0.95037 0.95500 1.14401 1.17680 0.75873 0.93802 1.01462 1.91346 1.30131 1.97375 1.94088 1.17141 0.87280 0.83680 1.31531 1.86652 1.70327 1.39221 1.27367 1.24595 0.79090 0.90719 0.76670 1.93008 1.53763 1.93229 1.79872 1.93008 1.76433 1.70920 1.80426 0.85667 0.92521 0.92443 0.84819 0.89111 0.86106 0.76729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 15 2 O -0.32 -13.05 9.72 -79.18 -0.77 -13.82 15 3 C 0.18 8.52 6.44 22.53 0.15 8.67 15 4 C -0.32 -15.17 8.77 22.80 0.20 -14.97 15 5 C 0.13 6.93 5.57 -21.29 -0.12 6.81 15 6 C -0.46 -22.49 9.03 23.39 0.21 -22.28 15 7 H 0.10 4.51 7.90 -2.91 -0.02 4.49 15 8 C 0.03 1.55 5.14 85.23 0.44 1.99 15 9 N -0.80 -39.44 10.96 21.81 0.24 -39.21 15 10 Si 0.99 34.29 29.59 68.60 2.03 36.32 15 11 H -0.25 -8.23 7.11 99.48 0.71 -7.52 15 12 H -0.26 -8.65 7.11 99.48 0.71 -7.94 15 13 H -0.27 -8.98 7.11 99.48 0.71 -8.27 15 14 C -0.24 -12.94 8.64 22.76 0.20 -12.74 15 15 C 0.13 6.89 7.00 22.40 0.16 7.05 15 16 F -0.15 -7.63 16.71 44.97 0.75 -6.88 15 17 C -0.15 -7.46 5.37 22.91 0.12 -7.34 15 18 O -0.32 -13.87 9.97 -77.14 -0.77 -14.64 15 19 C 0.38 13.29 6.35 113.37 0.72 14.01 15 20 F -0.22 -8.18 16.45 44.97 0.74 -7.44 15 21 F -0.23 -8.95 16.58 44.97 0.75 -8.20 15 22 H 0.13 2.66 8.14 -2.39 -0.02 2.65 15 23 H 0.06 1.58 7.65 -2.39 -0.02 1.56 15 24 H 0.06 1.61 7.66 -2.39 -0.02 1.59 15 25 H 0.13 5.56 6.27 -2.91 -0.02 5.55 15 26 H 0.30 13.03 8.30 -92.71 -0.77 12.26 15 27 H 0.12 6.71 6.19 -2.91 -0.02 6.70 15 28 H 0.22 4.73 8.14 -2.39 -0.02 4.71 15 Total: -1.00 -62.48 263.67 7.37 -55.11 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.22 Total: 15.77 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 3.19 Total: -17.02 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.24 Total: -39.21 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.54 Total: -28.46 kcal Atomic # 9 Polarization: -24.76 SS G_CDS: 2.24 Total: -22.52 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Total: -62.48 7.37 -55.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659174.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.655 kcal (2) G-P(sol) polarization free energy of solvation -62.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds