Wall clock time and date at job start Mon Mar 30 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35670 * 116.99856 * 2 1 4 4 C 1.38071 * 120.15366 * 359.97438 * 3 2 1 5 5 C 1.39027 * 120.18558 * 180.02562 * 4 3 2 6 6 O 1.35693 * 119.75585 * 179.97438 * 5 4 3 7 7 C 1.42901 * 117.00087 * 179.97438 * 6 5 4 8 8 F 1.39895 * 109.47225 * 300.00426 * 7 6 5 9 9 F 1.39903 * 109.46948 * 60.00540 * 7 6 5 10 10 C 1.39355 * 120.49037 * 359.97438 * 5 4 3 11 11 C 1.37569 * 120.30320 * 359.73154 * 10 5 4 12 12 F 1.35106 * 120.09729 * 180.28552 * 11 10 5 13 13 C 1.41082 * 119.80347 * 0.53851 * 11 10 5 14 14 C 1.40983 * 120.23796 * 179.73764 * 13 11 10 15 15 H 1.08006 * 119.99504 * 145.31049 * 14 13 11 16 16 C 1.39849 * 120.00214 * 325.31688 * 14 13 11 17 17 N 1.30953 * 119.99954 * 149.40919 * 16 14 13 18 18 Si 1.86795 * 119.99784 * 329.13024 * 16 14 13 19 19 H 1.48497 * 109.47421 * 270.27439 * 18 16 14 20 20 H 1.48497 * 109.47364 * 30.27973 * 18 16 14 21 21 H 1.48505 * 109.46800 * 150.27923 * 18 16 14 22 22 H 1.09001 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47146 * 300.00118 * 1 2 3 24 24 H 1.08995 * 109.47178 * 60.00130 * 1 2 3 25 25 H 1.07994 * 119.91030 * 0.02562 * 4 3 2 26 26 H 1.08999 * 109.47053 * 179.97438 * 7 6 5 27 27 H 1.08005 * 119.84630 * 179.97438 * 10 5 4 28 28 H 0.97005 * 120.00345 * 354.59515 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2961 2.3688 -0.0005 5 6 1.9265 3.6079 -0.0011 6 8 1.1820 4.7423 -0.0021 7 6 1.8905 5.9833 -0.0021 8 9 2.6935 6.0618 1.1407 9 9 2.6952 6.0609 -1.1438 10 6 3.3174 3.6936 -0.0005 11 6 4.0832 2.5508 0.0061 12 9 5.4314 2.6387 0.0124 13 6 3.4567 1.2867 0.0009 14 6 4.2326 0.1096 0.0020 15 1 3.8853 -0.7655 0.5312 16 6 5.4520 0.0753 -0.6818 17 7 6.4240 -0.6883 -0.2493 18 14 5.6916 1.1127 -2.2167 19 1 5.2772 0.3332 -3.4107 20 1 4.8652 2.3424 -2.1170 21 1 7.1231 1.4872 -2.3424 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 0.2175 2.3135 -0.0005 26 1 1.1781 6.8084 -0.0034 27 1 3.7963 4.6616 -0.0014 28 1 6.3272 -1.1695 0.5874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:10 Heat of formation + Delta-G solvation = -224.222392 kcal Electronic energy + Delta-G solvation = -20245.130886 eV Core-core repulsion = 16425.230132 eV Total energy + Delta-G solvation = -3819.900754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.19926 -49.73076 -48.20654 -40.95418 -39.56087 -37.21653 -35.48088 -31.95718 -30.79164 -28.23685 -27.54652 -25.72409 -23.22500 -22.77835 -20.52120 -20.18806 -19.20055 -18.76660 -18.09878 -17.40316 -17.16514 -16.80408 -16.39479 -16.32199 -15.91398 -15.47085 -15.27746 -15.13146 -14.74645 -14.65629 -14.52087 -14.35790 -13.67987 -13.30081 -13.08500 -12.89034 -12.59435 -12.36357 -12.16986 -11.89668 -11.46247 -11.40309 -10.89289 -9.55719 -9.33893 -9.14990 -6.45062 0.39162 0.50545 1.37832 1.46348 1.63737 1.80738 2.19015 2.42059 2.56166 2.70656 3.05896 3.57392 3.79079 3.80483 4.00392 4.24032 4.34828 4.38002 4.48122 4.67323 4.76004 4.98331 5.22548 5.29084 5.49462 5.64962 5.97895 6.18010 6.30591 6.58728 6.87253 7.91359 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.009710 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.113522 B = 2882.975561 C = 3884.483401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.079 3.921 4 C -0.188 4.188 5 C 0.051 3.949 6 O -0.320 6.320 7 C 0.402 3.598 8 F -0.216 7.216 9 F -0.216 7.216 10 C -0.211 4.211 11 C 0.010 3.990 12 F -0.149 7.149 13 C 0.009 3.991 14 C -0.543 4.543 15 H 0.059 0.941 16 C 0.027 3.973 17 N -0.822 5.822 18 Si 1.093 2.907 19 H -0.275 1.275 20 H -0.267 1.267 21 H -0.270 1.270 22 H 0.115 0.885 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.158 0.842 26 H 0.242 0.758 27 H 0.132 0.868 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.129 10.702 -1.034 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.033 3.967 4 C -0.207 4.207 5 C 0.007 3.993 6 O -0.238 6.238 7 C 0.313 3.687 8 F -0.198 7.198 9 F -0.198 7.198 10 C -0.231 4.231 11 C -0.011 4.011 12 F -0.129 7.129 13 C 0.005 3.995 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.190 4.190 17 N -0.445 5.445 18 Si 0.914 3.086 19 H -0.202 1.202 20 H -0.192 1.192 21 H -0.195 1.195 22 H 0.133 0.867 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.176 0.824 26 H 0.257 0.743 27 H 0.150 0.850 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.032 10.755 -2.167 15.559 hybrid contribution -0.231 -0.651 1.634 1.774 sum -11.263 10.104 -0.533 15.140 Atomic orbital electron populations 1.23313 0.77193 1.05073 1.02094 1.86030 1.22657 1.26281 1.89068 1.18579 0.90660 0.84245 1.03171 1.20233 1.00631 0.88382 1.11436 1.17716 0.87994 0.85813 1.07759 1.86406 1.35398 1.12555 1.89448 1.24359 0.83949 0.89689 0.70748 1.93054 1.77474 1.96306 1.52985 1.93058 1.77398 1.96311 1.53050 1.20978 0.93370 0.97916 1.10812 1.17062 0.76228 0.93478 1.14292 1.91062 1.30509 1.96565 1.94715 1.17235 0.90714 0.92406 0.99100 1.19988 1.05048 0.98940 1.33138 0.92244 1.28101 0.90337 0.96571 1.04010 1.70632 1.31284 1.22011 1.20538 0.83358 0.77779 0.75900 0.71564 1.20163 1.19238 1.19453 0.86678 0.91926 0.91680 0.82432 0.74252 0.85029 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.60 15 2 O -0.33 -13.87 9.89 -89.87 -0.89 -14.76 15 3 C 0.08 3.65 6.71 23.00 0.15 3.81 15 4 C -0.19 -7.30 8.96 22.42 0.20 -7.10 15 5 C 0.05 2.00 6.50 22.73 0.15 2.14 15 6 O -0.32 -9.80 10.41 -90.12 -0.94 -10.74 15 7 C 0.40 9.46 5.98 113.37 0.68 10.13 15 8 F -0.22 -6.21 15.56 44.97 0.70 -5.51 15 9 F -0.22 -6.23 15.56 44.97 0.70 -5.53 15 10 C -0.21 -9.42 8.19 22.38 0.18 -9.24 15 11 C 0.01 0.51 5.06 22.81 0.12 0.63 15 12 F -0.15 -7.97 12.85 44.97 0.58 -7.39 15 13 C 0.01 0.48 4.88 -21.13 -0.10 0.38 15 14 C -0.54 -31.43 8.81 23.33 0.21 -31.22 15 15 H 0.06 3.65 7.98 -2.91 -0.02 3.63 15 16 C 0.03 1.53 4.67 85.21 0.40 1.92 15 17 N -0.82 -47.38 13.66 21.82 0.30 -47.08 15 18 Si 1.09 53.08 25.86 68.60 1.77 54.85 15 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 20 H -0.27 -13.00 5.36 99.48 0.53 -12.47 15 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 22 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.06 1.51 7.66 -2.39 -0.02 1.49 15 24 H 0.06 1.56 7.66 -2.39 -0.02 1.54 15 25 H 0.16 4.85 6.28 -2.91 -0.02 4.83 15 26 H 0.24 2.20 8.14 -2.39 -0.02 2.18 15 27 H 0.13 5.50 5.05 -2.91 -0.01 5.48 15 28 H 0.28 16.00 8.73 -92.70 -0.81 15.19 15 Total: -1.00 -68.60 252.57 6.32 -62.28 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: 1.01 Total: 0.82 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.09 Total: -26.95 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.30 Total: -47.08 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.83 Total: -25.50 kcal Atomic # 9 Polarization: -20.40 SS G_CDS: 1.98 Total: -18.42 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 1.77 Total: 54.85 kcal Total: -68.60 6.32 -62.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.944 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds