Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35691 * 116.99881 * 2 1 4 4 C 1.38320 * 120.13832 * 0.02562 * 3 2 1 5 5 C 1.38485 * 120.20060 * 180.25391 * 4 3 2 6 6 F 1.35101 * 119.75905 * 179.70004 * 5 4 3 7 7 C 1.39640 * 120.48184 * 359.43820 * 5 4 3 8 8 O 1.35988 * 119.86534 * 180.26241 * 7 5 4 9 9 C 1.42905 * 116.99854 * 180.29705 * 8 7 5 10 10 F 1.39898 * 109.46910 * 299.99429 * 9 8 7 11 11 F 1.39895 * 109.47340 * 60.00012 * 9 8 7 12 12 C 1.37764 * 120.26876 * 0.55861 * 7 5 4 13 13 C 1.40755 * 119.79329 * 359.72255 * 12 7 5 14 14 C 1.41068 * 120.23646 * 179.97438 * 13 12 7 15 15 H 1.08000 * 119.99817 * 204.80962 * 14 13 12 16 16 C 1.39876 * 119.99896 * 24.81541 * 14 13 12 17 17 N 1.30914 * 120.00042 * 17.89893 * 16 14 13 18 18 Si 1.86801 * 119.99891 * 197.89455 * 16 14 13 19 19 H 1.48493 * 109.47110 * 60.00212 * 18 16 14 20 20 H 1.48507 * 109.46735 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47281 * 299.99771 * 18 16 14 22 22 H 1.08997 * 109.47407 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47250 * 299.99213 * 1 2 3 24 24 H 1.08999 * 109.47407 * 59.99638 * 1 2 3 25 25 H 1.07997 * 119.89755 * 359.97232 * 4 3 2 26 26 H 1.09005 * 109.46773 * 179.97438 * 9 8 7 27 27 H 1.07999 * 120.10150 * 179.74715 * 12 7 5 28 28 H 0.96995 * 120.00016 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2944 2.3709 0.0005 5 6 1.9218 3.6055 -0.0048 6 9 1.1799 4.7346 -0.0103 7 6 3.3155 3.6919 0.0011 8 8 3.9184 4.9108 0.0012 9 6 5.3473 4.9278 0.0007 10 9 5.8217 4.2737 1.1428 11 9 5.8211 4.2741 -1.1418 12 6 4.0822 2.5473 0.0006 13 6 3.4565 1.2864 0.0002 14 6 4.2325 0.1084 -0.0009 15 1 3.8204 -0.8094 -0.3937 16 6 5.5357 0.1289 0.5070 17 7 5.9185 1.1073 1.2880 18 14 6.7297 -1.2400 0.0710 19 1 6.9191 -1.2812 -1.4013 20 1 8.0358 -0.9863 0.7307 21 1 6.1837 -2.5401 0.5365 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.2159 2.3150 0.0005 26 1 5.6984 5.9597 0.0004 27 1 5.1599 2.6173 0.0011 28 1 6.8222 1.1217 1.6399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = -228.404101 kcal Electronic energy + Delta-G solvation = -20298.247292 eV Core-core repulsion = 16478.165206 eV Total energy + Delta-G solvation = -3820.082086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.07790 -49.37440 -48.09267 -40.69621 -39.52670 -37.22086 -35.31271 -31.64648 -30.36346 -28.15667 -27.45749 -26.15254 -23.35380 -22.69849 -20.15662 -19.34610 -18.79180 -18.67395 -18.45604 -17.46474 -16.90243 -16.61487 -16.55543 -16.02560 -15.77305 -15.12613 -15.08346 -14.71489 -14.60271 -14.54906 -14.36198 -13.77484 -13.68323 -13.27935 -13.16242 -12.85308 -12.73134 -12.32003 -12.19140 -11.94954 -11.62085 -11.29266 -10.96123 -9.54776 -8.86915 -8.59703 -6.33964 0.59521 0.77119 1.39296 1.48285 1.52614 1.85443 2.19377 2.52298 2.74496 2.79396 3.40765 3.66885 3.75800 3.87326 4.10282 4.41491 4.49285 4.55807 4.64380 4.76000 4.88808 5.13484 5.42679 5.53041 5.58746 5.79433 6.14475 6.39716 6.58758 6.74331 7.03418 8.23413 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.011914 C = 0.006929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.962743 B = 2349.617857 C = 4040.165257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.327 6.327 3 C 0.016 3.984 4 C -0.178 4.178 5 C -0.048 4.048 6 F -0.158 7.158 7 C 0.064 3.936 8 O -0.337 6.337 9 C 0.402 3.598 10 F -0.205 7.205 11 F -0.216 7.216 12 C -0.226 4.226 13 C 0.082 3.918 14 C -0.460 4.460 15 H 0.085 0.915 16 C 0.032 3.968 17 N -0.799 5.799 18 Si 0.984 3.016 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.257 1.257 22 H 0.118 0.882 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.148 0.852 26 H 0.236 0.764 27 H 0.148 0.852 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 2.479 -1.675 3.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.242 6.242 3 C -0.029 4.029 4 C -0.197 4.197 5 C -0.069 4.069 6 F -0.138 7.138 7 C 0.020 3.980 8 O -0.256 6.256 9 C 0.313 3.687 10 F -0.187 7.187 11 F -0.198 7.198 12 C -0.246 4.246 13 C 0.079 3.921 14 C -0.488 4.488 15 H 0.103 0.897 16 C -0.185 4.185 17 N -0.423 5.423 18 Si 0.804 3.196 19 H -0.184 1.184 20 H -0.189 1.189 21 H -0.181 1.181 22 H 0.136 0.864 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.166 0.834 26 H 0.251 0.749 27 H 0.165 0.835 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.418 2.564 -1.511 3.005 hybrid contribution 0.273 -0.263 0.026 0.380 sum -0.145 2.301 -1.486 2.742 Atomic orbital electron populations 1.23191 0.78181 1.04765 1.01246 1.85953 1.21820 1.26449 1.89931 1.18992 0.91821 0.83706 1.08356 1.20574 1.00038 0.89797 1.09328 1.16289 0.85090 0.82232 1.23246 1.91289 1.76573 1.49968 1.95922 1.18778 0.90939 0.84185 1.04068 1.86453 1.21003 1.28775 1.89343 1.24221 0.77430 0.95755 0.71284 1.93114 1.88145 1.85111 1.52355 1.93031 1.88358 1.85411 1.53012 1.21422 1.00568 0.89925 1.12713 1.17272 0.88767 0.94089 0.91978 1.19637 0.97920 0.96387 1.34833 0.89708 1.26857 0.99992 0.99717 0.91973 1.69884 1.20158 1.31484 1.20757 0.85211 0.76616 0.78000 0.79763 1.18426 1.18894 1.18130 0.86400 0.92939 0.92616 0.83433 0.74874 0.83485 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.81 113.37 1.11 1.75 15 2 O -0.33 -14.49 9.77 -90.10 -0.88 -15.37 15 3 C 0.02 0.81 6.72 23.06 0.15 0.97 15 4 C -0.18 -8.11 9.00 22.35 0.20 -7.91 15 5 C -0.05 -2.33 7.32 22.67 0.17 -2.17 15 6 F -0.16 -7.28 17.10 44.97 0.77 -6.51 15 7 C 0.06 3.20 6.49 22.50 0.15 3.34 15 8 O -0.34 -14.55 10.29 -93.41 -0.96 -15.51 15 9 C 0.40 14.01 5.98 113.37 0.68 14.69 15 10 F -0.21 -8.42 15.57 44.97 0.70 -7.71 15 11 F -0.22 -8.44 15.57 44.97 0.70 -7.74 15 12 C -0.23 -12.03 6.88 22.77 0.16 -11.87 15 13 C 0.08 4.49 5.58 -21.20 -0.12 4.37 15 14 C -0.46 -24.62 8.71 23.36 0.20 -24.41 15 15 H 0.08 4.44 7.65 -2.91 -0.02 4.42 15 16 C 0.03 1.60 5.13 85.23 0.44 2.03 15 17 N -0.80 -40.76 10.98 21.82 0.24 -40.52 15 18 Si 0.98 37.45 29.60 68.60 2.03 39.48 15 19 H -0.26 -9.74 7.11 99.48 0.71 -9.04 15 20 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 21 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 22 H 0.12 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.05 1.51 7.66 -2.39 -0.02 1.49 15 24 H 0.06 1.56 7.66 -2.39 -0.02 1.54 15 25 H 0.15 5.63 6.28 -2.91 -0.02 5.61 15 26 H 0.24 4.63 8.14 -2.38 -0.02 4.61 15 27 H 0.15 7.87 3.17 -2.91 -0.01 7.86 15 28 H 0.29 13.56 8.30 -92.71 -0.77 12.79 15 Total: -1.00 -65.51 258.81 6.96 -58.54 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.23 Total: 14.56 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 3.14 Total: -19.21 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.24 Total: -40.52 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.84 Total: -30.88 kcal Atomic # 9 Polarization: -24.14 SS G_CDS: 2.17 Total: -21.97 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -65.51 6.96 -58.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.860 kcal (2) G-P(sol) polarization free energy of solvation -65.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds