Wall clock time and date at job start Mon Mar 30 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35727 * 117.00573 * 2 1 4 4 C 1.38294 * 120.23320 * 270.28418 * 3 2 1 5 5 F 1.35105 * 120.01521 * 0.02562 * 4 3 2 6 6 C 1.39103 * 119.97185 * 180.24829 * 4 3 2 7 7 O 1.35740 * 119.78249 * 179.76058 * 6 4 3 8 8 C 1.42905 * 117.00469 * 179.72448 * 7 6 4 9 9 F 1.39895 * 109.46855 * 59.99618 * 8 7 6 10 10 F 1.39905 * 109.46744 * 300.00206 * 8 7 6 11 11 C 1.39438 * 120.43967 * 359.48589 * 6 4 3 12 12 C 1.36321 * 120.46988 * 0.23226 * 11 6 4 13 13 C 1.40842 * 120.01713 * 0.02562 * 12 11 6 14 14 C 1.41029 * 120.21805 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99676 * 150.00997 * 14 13 12 16 16 C 1.39864 * 119.99903 * 330.00482 * 14 13 12 17 17 N 1.30929 * 119.99766 * 161.79627 * 16 14 13 18 18 Si 1.86797 * 120.00152 * 341.80241 * 16 14 13 19 19 H 1.48497 * 109.47351 * 95.40400 * 18 16 14 20 20 H 1.48508 * 109.47022 * 215.40541 * 18 16 14 21 21 H 1.48497 * 109.46810 * 335.40241 * 18 16 14 22 22 H 1.09003 * 109.46430 * 59.99922 * 1 2 3 23 23 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46787 * 300.00496 * 1 2 3 25 25 H 1.08998 * 109.47478 * 180.02562 * 8 7 6 26 26 H 1.07998 * 119.76683 * 180.25421 * 11 6 4 27 27 H 1.08002 * 119.99163 * 180.02562 * 12 11 6 28 28 H 0.97002 * 120.00396 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 2.3562 1.8324 -1.1948 5 9 2.0461 1.2379 -2.3678 6 6 2.9925 3.0693 -1.1885 7 8 3.3003 3.6752 -2.3635 8 6 3.9478 4.9469 -2.2878 9 9 5.1614 4.8122 -1.6051 10 9 3.1256 5.8488 -1.6038 11 6 3.3112 3.6937 0.0169 12 6 3.0079 3.0983 1.2051 13 6 2.3685 1.8435 1.2215 14 6 2.0522 1.2240 2.4483 15 1 1.1948 0.5710 2.5183 16 6 2.8490 1.4551 3.5743 17 7 2.3853 1.1907 4.7698 18 14 4.5747 2.1412 3.3725 19 1 4.5438 3.6162 3.5409 20 1 5.4677 1.5444 4.3982 21 1 5.0845 1.8081 2.0182 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.1362 5.3193 -3.2947 26 1 3.8015 4.6559 0.0091 27 1 3.2579 3.5890 2.1342 28 1 2.9380 1.3507 5.5508 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575659727.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:56 Heat of formation + Delta-G solvation = -207.630219 kcal Electronic energy + Delta-G solvation = -20186.921376 eV Core-core repulsion = 16367.740113 eV Total energy + Delta-G solvation = -3819.181263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.99791 -47.97336 -46.99640 -38.99428 -37.81943 -35.75036 -33.62305 -30.16606 -29.24609 -26.76030 -25.79986 -24.32242 -21.97618 -21.21293 -18.62055 -18.02857 -17.79068 -17.55486 -16.30920 -15.96105 -15.50805 -15.23382 -15.10672 -14.46805 -14.08030 -13.89691 -13.71971 -13.39615 -13.35937 -13.07019 -13.05384 -12.71996 -12.14227 -11.98957 -11.68215 -11.42007 -11.07950 -10.81639 -10.59343 -10.03503 -9.91443 -9.43022 -8.98924 -7.78175 -7.56288 -7.20087 -4.67632 2.05208 2.18461 2.97267 3.08172 3.11241 3.19996 3.79308 3.81130 4.05735 4.61208 4.69289 4.94404 5.02896 5.23710 5.67919 5.92220 5.94446 6.05512 6.21037 6.31457 6.42443 6.83613 6.85209 6.97835 7.18565 7.46457 7.81151 8.02744 8.15425 8.46750 8.65631 9.79826 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.009735 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.509076 B = 2875.424986 C = 4052.445554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.119 3.881 5 F -0.145 7.145 6 C -0.071 4.071 7 O -0.320 6.320 8 C 0.412 3.588 9 F -0.206 7.206 10 F -0.206 7.206 11 C -0.108 4.108 12 C -0.206 4.206 13 C 0.080 3.920 14 C -0.409 4.409 15 H 0.100 0.900 16 C 0.083 3.917 17 N -0.787 5.787 18 Si 0.908 3.092 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.240 1.240 22 H 0.032 0.968 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.169 0.831 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 5.430 -7.639 9.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.225 6.225 3 C -0.076 4.076 4 C 0.099 3.901 5 F -0.123 7.123 6 C -0.114 4.114 7 O -0.239 6.239 8 C 0.321 3.679 9 F -0.188 7.188 10 F -0.188 7.188 11 C -0.127 4.127 12 C -0.225 4.225 13 C 0.075 3.925 14 C -0.435 4.435 15 H 0.118 0.882 16 C -0.139 4.139 17 N -0.410 5.410 18 Si 0.734 3.266 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.163 1.163 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.186 0.814 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.938 5.110 -7.511 9.289 hybrid contribution 0.542 0.652 0.174 0.866 sum 2.480 5.763 -7.337 9.653 Atomic orbital electron populations 1.22928 0.81979 1.01648 0.99883 1.86042 1.18105 1.24475 1.93923 1.18296 1.09976 0.89687 0.89595 1.17125 1.02359 0.89847 0.80755 1.91368 1.91324 1.83449 1.46201 1.17941 1.14104 0.95361 0.83969 1.86397 1.75271 1.31772 1.30469 1.23135 0.73619 0.78854 0.92287 1.93064 1.46733 1.95497 1.83460 1.93066 1.73480 1.68791 1.83414 1.20653 1.00961 0.99556 0.91526 1.20539 1.08718 0.96727 0.96513 1.17806 0.91449 0.90743 0.92462 1.19366 1.10954 1.22690 0.90509 0.88246 1.26251 1.01282 0.92247 0.94108 1.69707 1.37877 1.34010 0.99365 0.86337 0.80673 0.79130 0.80495 1.19168 1.21084 1.16260 0.94980 0.90147 0.93598 0.81406 0.86353 0.86613 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.97 101.05 1.11 1.69 15 2 O -0.31 -7.27 9.63 -18.89 -0.18 -7.45 15 3 C -0.03 -0.72 5.76 -38.37 -0.22 -0.94 15 4 C 0.12 2.81 7.31 -39.24 -0.29 2.52 15 5 F -0.14 -3.29 16.94 2.25 0.04 -3.25 15 6 C -0.07 -1.57 6.51 -38.81 -0.25 -1.82 15 7 O -0.32 -6.11 10.27 -18.93 -0.19 -6.30 15 8 C 0.41 5.95 5.98 101.05 0.60 6.55 15 9 F -0.21 -3.29 15.56 2.25 0.04 -3.25 15 10 F -0.21 -3.23 15.56 2.25 0.04 -3.20 15 11 C -0.11 -2.37 8.17 -39.82 -0.33 -2.70 15 12 C -0.21 -4.83 7.11 -39.29 -0.28 -5.10 15 13 C 0.08 1.99 5.11 -106.66 -0.55 1.44 15 14 C -0.41 -10.58 9.18 -37.92 -0.35 -10.93 15 15 H 0.10 2.69 7.22 -52.49 -0.38 2.31 15 16 C 0.08 2.06 5.40 -17.33 -0.09 1.97 15 17 N -0.79 -19.71 13.93 55.54 0.77 -18.94 15 18 Si 0.91 19.81 24.52 -169.99 -4.17 15.64 15 19 H -0.27 -5.54 6.71 56.52 0.38 -5.16 15 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 21 H -0.24 -5.47 6.87 56.52 0.39 -5.08 15 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.08 1.28 8.14 -51.93 -0.42 0.85 15 24 H 0.05 0.88 7.62 -51.93 -0.40 0.49 15 25 H 0.17 1.44 8.14 -51.93 -0.42 1.02 15 26 H 0.12 2.36 5.04 -52.49 -0.26 2.10 15 27 H 0.12 2.63 4.74 -52.49 -0.25 2.38 15 28 H 0.29 6.54 8.30 -40.82 -0.34 6.20 15 LS Contribution 255.92 15.07 3.86 3.86 Total: -1.00 -28.32 255.92 -2.17 -30.49 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -1.73 Total: -0.28 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.64 Total: -7.32 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.77 Total: -18.94 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.38 Total: -13.75 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 0.11 Total: -9.70 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.17 Total: 15.64 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.32 -2.17 -30.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659727.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.139 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds