Wall clock time and date at job start Mon Mar 30 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35727 * 117.00573 * 2 1 4 4 C 1.38294 * 120.23320 * 270.28418 * 3 2 1 5 5 F 1.35105 * 120.01521 * 0.02562 * 4 3 2 6 6 C 1.39103 * 119.97185 * 180.24829 * 4 3 2 7 7 O 1.35740 * 119.78249 * 179.76058 * 6 4 3 8 8 C 1.42905 * 117.00469 * 179.72448 * 7 6 4 9 9 F 1.39895 * 109.46855 * 59.99618 * 8 7 6 10 10 F 1.39905 * 109.46744 * 300.00206 * 8 7 6 11 11 C 1.39438 * 120.43967 * 359.48589 * 6 4 3 12 12 C 1.36321 * 120.46988 * 0.23226 * 11 6 4 13 13 C 1.40842 * 120.01713 * 0.02562 * 12 11 6 14 14 C 1.41029 * 120.21805 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99676 * 150.00997 * 14 13 12 16 16 C 1.39864 * 119.99903 * 330.00482 * 14 13 12 17 17 N 1.30929 * 119.99766 * 161.79627 * 16 14 13 18 18 Si 1.86797 * 120.00152 * 341.80241 * 16 14 13 19 19 H 1.48497 * 109.47351 * 95.40400 * 18 16 14 20 20 H 1.48508 * 109.47022 * 215.40541 * 18 16 14 21 21 H 1.48497 * 109.46810 * 335.40241 * 18 16 14 22 22 H 1.09003 * 109.46430 * 59.99922 * 1 2 3 23 23 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46787 * 300.00496 * 1 2 3 25 25 H 1.08998 * 109.47478 * 180.02562 * 8 7 6 26 26 H 1.07998 * 119.76683 * 180.25421 * 11 6 4 27 27 H 1.08002 * 119.99163 * 180.02562 * 12 11 6 28 28 H 0.97002 * 120.00396 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 2.3562 1.8324 -1.1948 5 9 2.0461 1.2379 -2.3678 6 6 2.9925 3.0693 -1.1885 7 8 3.3003 3.6752 -2.3635 8 6 3.9478 4.9469 -2.2878 9 9 5.1614 4.8122 -1.6051 10 9 3.1256 5.8488 -1.6038 11 6 3.3112 3.6937 0.0169 12 6 3.0079 3.0983 1.2051 13 6 2.3685 1.8435 1.2215 14 6 2.0522 1.2240 2.4483 15 1 1.1948 0.5710 2.5183 16 6 2.8490 1.4551 3.5743 17 7 2.3853 1.1907 4.7698 18 14 4.5747 2.1412 3.3725 19 1 4.5438 3.6162 3.5409 20 1 5.4677 1.5444 4.3982 21 1 5.0845 1.8081 2.0182 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.1362 5.3193 -3.2947 26 1 3.8015 4.6559 0.0091 27 1 3.2579 3.5890 2.1342 28 1 2.9380 1.3507 5.5508 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659727.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:55 Heat of formation + Delta-G solvation = -226.210932 kcal Electronic energy + Delta-G solvation = -20187.727096 eV Core-core repulsion = 16367.740113 eV Total energy + Delta-G solvation = -3819.986983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.20165 -49.77381 -48.20210 -40.72549 -39.46938 -37.49547 -35.44830 -31.97007 -31.03407 -28.35110 -27.29603 -25.93191 -23.77575 -22.92198 -20.13248 -19.85346 -19.21102 -18.78629 -17.92721 -17.70367 -17.22447 -16.97326 -16.86954 -16.11693 -15.72854 -15.37257 -15.23421 -14.96859 -14.80646 -14.67105 -14.48542 -14.31895 -13.82358 -13.52789 -13.31391 -13.00372 -12.72162 -12.58742 -12.32416 -11.78286 -11.69210 -11.20596 -10.74626 -9.59639 -9.37511 -9.04022 -6.58226 0.23277 0.36520 1.23331 1.36140 1.45675 1.77864 2.04612 2.26521 2.63451 2.91819 3.19130 3.41956 3.62442 3.80656 3.95938 4.15798 4.38700 4.50111 4.54795 4.67623 4.72694 5.05268 5.07668 5.17644 5.37690 5.63703 6.03528 6.15461 6.31012 6.57023 6.84823 8.02031 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.009735 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.509076 B = 2875.424986 C = 4052.445554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.332 6.332 3 C -0.037 4.037 4 C 0.098 3.902 5 F -0.142 7.142 6 C -0.049 4.049 7 O -0.329 6.329 8 C 0.405 3.595 9 F -0.214 7.214 10 F -0.212 7.212 11 C -0.111 4.111 12 C -0.209 4.209 13 C 0.065 3.935 14 C -0.442 4.442 15 H 0.071 0.929 16 C 0.054 3.946 17 N -0.821 5.821 18 Si 0.952 3.048 19 H -0.246 1.246 20 H -0.269 1.269 21 H -0.256 1.256 22 H 0.043 0.957 23 H 0.112 0.888 24 H 0.035 0.965 25 H 0.237 0.763 26 H 0.142 0.858 27 H 0.123 0.877 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 6.986 -9.086 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.249 6.249 3 C -0.083 4.083 4 C 0.078 3.922 5 F -0.121 7.121 6 C -0.093 4.093 7 O -0.248 6.248 8 C 0.316 3.684 9 F -0.195 7.195 10 F -0.194 7.194 11 C -0.130 4.130 12 C -0.228 4.228 13 C 0.061 3.939 14 C -0.469 4.469 15 H 0.089 0.911 16 C -0.164 4.164 17 N -0.445 5.445 18 Si 0.775 3.225 19 H -0.171 1.171 20 H -0.194 1.194 21 H -0.180 1.180 22 H 0.062 0.938 23 H 0.130 0.870 24 H 0.054 0.946 25 H 0.253 0.747 26 H 0.160 0.840 27 H 0.141 0.859 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.053 6.680 -8.958 11.584 hybrid contribution 0.146 0.207 0.414 0.486 sum 3.198 6.887 -8.544 11.430 Atomic orbital electron populations 1.23110 0.79626 1.03848 0.99875 1.85953 1.20373 1.24494 1.94035 1.18519 1.09941 0.89790 0.90022 1.17242 1.03530 0.90841 0.80632 1.91363 1.91401 1.83521 1.45804 1.18063 1.11382 0.94617 0.85232 1.86417 1.75566 1.33934 1.28924 1.24262 0.72417 0.76812 0.94924 1.93050 1.47124 1.95394 1.83981 1.93054 1.73761 1.68693 1.83912 1.20893 1.00828 1.00358 0.90885 1.20691 1.08399 0.96144 0.97571 1.17949 0.92198 0.91451 0.92316 1.19267 1.11526 1.24197 0.91911 0.91107 1.26803 1.03654 0.92383 0.93581 1.69708 1.39259 1.35518 1.00019 0.85676 0.77252 0.79850 0.79758 1.17087 1.19448 1.18029 0.93848 0.86951 0.94624 0.74705 0.84030 0.85908 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 10.97 113.37 1.24 2.37 15 2 O -0.33 -15.80 9.63 -90.50 -0.87 -16.67 15 3 C -0.04 -1.81 5.76 23.06 0.13 -1.67 15 4 C 0.10 4.52 7.31 22.49 0.16 4.68 15 5 F -0.14 -6.30 16.94 44.97 0.76 -5.54 15 6 C -0.05 -2.08 6.51 22.77 0.15 -1.93 15 7 O -0.33 -11.48 10.27 -90.65 -0.93 -12.41 15 8 C 0.41 9.95 5.98 113.37 0.68 10.63 15 9 F -0.21 -6.02 15.56 44.97 0.70 -5.32 15 10 F -0.21 -5.88 15.56 44.97 0.70 -5.18 15 11 C -0.11 -4.64 8.17 22.11 0.18 -4.46 15 12 C -0.21 -9.60 7.11 22.46 0.16 -9.44 15 13 C 0.06 3.26 5.11 -21.19 -0.11 3.16 15 14 C -0.44 -23.64 9.18 23.35 0.21 -23.43 15 15 H 0.07 4.06 7.22 -2.91 -0.02 4.04 15 16 C 0.05 2.74 5.40 85.22 0.46 3.20 15 17 N -0.82 -41.88 13.93 21.82 0.30 -41.58 15 18 Si 0.95 40.07 24.52 68.60 1.68 41.75 15 19 H -0.25 -9.50 6.71 99.48 0.67 -8.83 15 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 21 H -0.26 -11.40 6.87 99.48 0.68 -10.71 15 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.11 3.47 8.14 -2.39 -0.02 3.45 15 24 H 0.04 1.40 7.62 -2.39 -0.02 1.39 15 25 H 0.24 2.61 8.14 -2.39 -0.02 2.59 15 26 H 0.14 5.21 5.04 -2.91 -0.01 5.19 15 27 H 0.12 5.40 4.74 -2.91 -0.01 5.39 15 28 H 0.30 13.64 8.30 -92.71 -0.77 12.87 15 Total: -1.00 -61.59 255.92 6.78 -54.81 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.16 Total: 7.05 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 3.27 Total: -16.90 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.30 Total: -41.58 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.80 Total: -29.08 kcal Atomic # 9 Polarization: -18.21 SS G_CDS: 2.16 Total: -16.05 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.68 Total: 41.75 kcal Total: -61.59 6.78 -54.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659727.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.397 kcal (2) G-P(sol) polarization free energy of solvation -61.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds