Wall clock time and date at job start Mon Mar 30 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36052 * 116.99774 * 2 1 4 4 C 1.38103 * 120.02419 * 270.23504 * 3 2 1 5 5 F 1.35102 * 120.20636 * 0.02562 * 4 3 2 6 6 C 1.41017 * 119.59224 * 180.25156 * 4 3 2 7 7 C 1.41134 * 120.18313 * 179.72184 * 6 4 3 8 8 H 1.08003 * 119.99658 * 24.76046 * 7 6 4 9 9 C 1.39868 * 120.00259 * 204.75410 * 7 6 4 10 10 N 1.30911 * 119.99909 * 17.88103 * 9 7 6 11 11 Si 1.86801 * 119.99962 * 197.87702 * 9 7 6 12 12 H 1.48499 * 109.47203 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47200 * 120.00384 * 11 9 7 14 14 H 1.48499 * 109.46622 * 240.00066 * 11 9 7 15 15 C 1.40866 * 119.63714 * 359.74913 * 6 4 3 16 16 C 1.36395 * 120.04012 * 0.02562 * 15 6 4 17 17 C 1.39270 * 120.41746 * 359.97438 * 16 15 6 18 18 O 1.35759 * 119.82241 * 179.97438 * 17 16 15 19 19 C 1.42902 * 116.99500 * 359.97438 * 18 17 16 20 20 F 1.39896 * 109.47253 * 60.00337 * 19 18 17 21 21 F 1.39897 * 109.47464 * 300.00148 * 19 18 17 22 22 H 1.09004 * 109.46656 * 300.00064 * 1 2 3 23 23 H 1.08996 * 109.47311 * 59.99275 * 1 2 3 24 24 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 25 25 H 0.96994 * 120.00292 * 180.02562 * 10 9 7 26 26 H 1.08002 * 119.98038 * 179.97438 * 15 6 4 27 27 H 1.08001 * 119.79188 * 179.97438 * 16 15 6 28 28 H 1.09003 * 109.46943 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 2.3559 1.8302 -1.1957 5 9 2.0467 1.2349 -2.3684 6 6 3.0009 3.0842 -1.1851 7 6 3.3281 3.7241 -2.3997 8 1 2.7700 3.4984 -3.2964 9 6 4.3749 4.6508 -2.4422 10 7 5.2659 4.6761 -1.4835 11 14 4.5017 5.8520 -3.8671 12 1 3.3805 5.6188 -4.8125 13 1 4.4328 7.2424 -3.3500 14 1 5.7930 5.6494 -4.5718 15 6 3.3174 3.6944 0.0445 16 6 3.0009 3.0729 1.2166 17 6 2.3639 1.8344 1.2084 18 8 2.0549 1.2264 2.3823 19 6 2.4129 1.9138 3.5828 20 9 1.7667 3.1540 3.6204 21 9 3.7979 2.1085 3.6135 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 5.9917 5.3189 -1.5127 26 1 3.8117 4.6545 0.0591 27 1 3.2458 3.5441 2.1570 28 1 2.1098 1.3204 4.4455 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659733.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:42 Heat of formation + Delta-G solvation = -228.539171 kcal Electronic energy + Delta-G solvation = -20086.975494 eV Core-core repulsion = 16266.887550 eV Total energy + Delta-G solvation = -3820.087943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.15254 -49.33766 -48.16162 -40.82529 -38.75097 -38.02867 -35.27006 -31.41684 -30.81663 -27.87651 -27.69055 -26.07160 -23.30863 -23.02939 -19.94702 -19.78346 -19.02844 -18.73019 -17.78341 -17.62457 -17.11927 -16.82655 -16.77047 -15.67423 -15.56696 -15.34144 -15.21623 -15.07833 -14.62873 -14.44127 -14.37610 -14.13299 -13.65244 -13.33830 -12.99762 -12.90212 -12.79145 -12.44691 -12.02980 -11.91922 -11.85644 -11.10630 -10.85680 -9.45708 -9.27464 -8.80972 -6.47508 0.46323 0.55839 1.37890 1.43222 1.54469 1.88830 2.16797 2.39571 2.69712 2.85508 3.29024 3.66973 3.84603 3.90327 4.17398 4.32730 4.45787 4.51276 4.65257 4.73623 4.93618 5.09169 5.17371 5.56227 5.69382 5.74078 6.05265 6.27785 6.49364 6.66405 6.81935 8.16256 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.007797 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.438926 B = 3590.162430 C = 4638.266362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.345 6.345 3 C 0.078 3.922 4 C -0.056 4.056 5 F -0.155 7.155 6 C 0.056 3.944 7 C -0.478 4.478 8 H 0.078 0.922 9 C 0.039 3.961 10 N -0.810 5.810 11 Si 0.991 3.009 12 H -0.260 1.260 13 H -0.255 1.255 14 H -0.262 1.262 15 C -0.131 4.131 16 C -0.150 4.150 17 C -0.021 4.021 18 O -0.324 6.324 19 C 0.403 3.597 20 F -0.214 7.214 21 F -0.216 7.216 22 H 0.050 0.950 23 H 0.035 0.965 24 H 0.121 0.879 25 H 0.298 0.702 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -1.410 7.448 9.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.262 6.262 3 C 0.033 3.967 4 C -0.077 4.077 5 F -0.134 7.134 6 C 0.053 3.947 7 C -0.506 4.506 8 H 0.096 0.904 9 C -0.178 4.178 10 N -0.435 5.435 11 Si 0.811 3.189 12 H -0.184 1.184 13 H -0.180 1.180 14 H -0.187 1.187 15 C -0.151 4.151 16 C -0.169 4.169 17 C -0.064 4.064 18 O -0.242 6.242 19 C 0.313 3.687 20 F -0.196 7.196 21 F -0.198 7.198 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.139 0.861 25 H 0.109 0.891 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.679 -1.647 7.515 9.004 hybrid contribution 0.219 0.761 -0.753 1.093 sum -4.460 -0.886 6.762 8.149 Atomic orbital electron populations 1.23136 0.77945 1.04494 1.00378 1.85966 1.21501 1.24385 1.94366 1.17572 1.02433 0.87571 0.89105 1.17866 1.15679 0.94500 0.79664 1.91246 1.92233 1.83576 1.46388 1.17886 0.91836 0.89304 0.95669 1.19696 1.14607 1.20661 0.95626 0.90372 1.26826 0.92770 0.97715 1.00520 1.69841 1.09411 1.30950 1.33256 0.85019 0.79413 0.77394 0.77118 1.18367 1.17954 1.18700 1.20817 1.03181 1.00836 0.90236 1.20992 1.01771 0.94518 0.99639 1.18357 1.09435 0.94796 0.83855 1.86403 1.78478 1.47017 1.12324 1.24267 0.73268 0.80109 0.91026 1.93041 1.81517 1.48418 1.96655 1.93048 1.34564 1.95547 1.96681 0.93089 0.94618 0.86060 0.89116 0.85402 0.85165 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 11.13 113.37 1.26 2.40 15 2 O -0.34 -15.26 10.06 -80.12 -0.81 -16.07 15 3 C 0.08 3.83 5.74 22.56 0.13 3.96 15 4 C -0.06 -3.01 7.31 22.92 0.17 -2.85 15 5 F -0.16 -8.30 16.55 44.97 0.74 -7.56 15 6 C 0.06 3.11 5.58 -21.24 -0.12 2.99 15 7 C -0.48 -25.81 8.77 23.38 0.20 -25.60 15 8 H 0.08 4.20 7.73 -2.91 -0.02 4.18 15 9 C 0.04 1.90 5.13 85.22 0.44 2.33 15 10 N -0.81 -40.42 10.97 21.82 0.24 -40.18 15 11 Si 0.99 36.73 29.60 68.60 2.03 38.76 15 12 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 13 H -0.26 -8.85 7.11 99.48 0.71 -8.15 15 14 H -0.26 -9.29 7.11 99.48 0.71 -8.59 15 15 C -0.13 -6.78 8.63 22.48 0.19 -6.59 15 16 C -0.15 -7.01 8.17 22.09 0.18 -6.83 15 17 C -0.02 -0.95 6.52 22.84 0.15 -0.81 15 18 O -0.32 -12.09 10.20 -76.83 -0.78 -12.87 15 19 C 0.40 11.09 5.98 113.37 0.68 11.76 15 20 F -0.21 -6.55 15.56 44.97 0.70 -5.85 15 21 F -0.22 -6.99 15.56 44.97 0.70 -6.29 15 22 H 0.05 1.57 8.14 -2.39 -0.02 1.56 15 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 15 24 H 0.12 3.04 8.14 -2.39 -0.02 3.02 15 25 H 0.30 13.12 8.30 -92.71 -0.77 12.35 15 26 H 0.13 6.66 6.16 -2.91 -0.02 6.64 15 27 H 0.13 5.52 5.05 -2.91 -0.01 5.51 15 28 H 0.24 3.17 8.14 -2.39 -0.02 3.15 15 Total: -1.00 -64.68 262.57 7.33 -57.35 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.22 Total: 11.92 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 3.28 Total: -19.22 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.24 Total: -40.18 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.59 Total: -28.94 kcal Atomic # 9 Polarization: -21.84 SS G_CDS: 2.14 Total: -19.70 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -64.68 7.33 -57.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659733.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.189 kcal (2) G-P(sol) polarization free energy of solvation -64.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds