Wall clock time and date at job start Mon Mar 30 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35696 * 116.99573 * 2 1 4 4 C 1.39348 * 119.75902 * 359.97438 * 3 2 1 5 5 C 1.37571 * 120.30583 * 180.02562 * 4 3 2 6 6 F 1.35104 * 120.09814 * 180.02562 * 5 4 3 7 7 C 1.41089 * 119.80285 * 0.02562 * 5 4 3 8 8 C 1.40978 * 120.23762 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99588 * 144.64675 * 8 7 5 10 10 C 1.39850 * 120.00153 * 324.65029 * 8 7 5 11 11 N 1.30960 * 120.00131 * 150.97770 * 10 8 7 12 12 Si 1.86801 * 119.99796 * 330.69839 * 10 8 7 13 13 H 1.48502 * 109.47497 * 265.01953 * 12 10 8 14 14 H 1.48507 * 109.46969 * 25.01794 * 12 10 8 15 15 H 1.48501 * 109.47234 * 145.01852 * 12 10 8 16 16 C 1.41380 * 119.51955 * 0.27147 * 7 5 4 17 17 O 1.35685 * 120.15041 * 179.72335 * 16 7 5 18 18 C 1.42897 * 116.99933 * 180.02562 * 17 16 7 19 19 F 1.39905 * 109.46964 * 300.00274 * 18 17 16 20 20 F 1.39897 * 109.47474 * 59.99897 * 18 17 16 21 21 C 1.38066 * 119.69529 * 359.43004 * 16 7 5 22 22 H 1.09005 * 109.47091 * 60.00297 * 1 2 3 23 23 H 1.08999 * 109.46898 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47289 * 300.00460 * 1 2 3 25 25 H 1.08004 * 119.84910 * 0.02562 * 4 3 2 26 26 H 0.96996 * 119.99768 * 179.72346 * 11 10 8 27 27 H 1.08996 * 109.47134 * 180.02562 * 18 17 16 28 28 H 1.08000 * 119.90904 * 180.31232 * 21 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 1.2810 2.3745 -0.0005 5 6 1.8937 3.6062 -0.0011 6 9 1.1490 4.7335 -0.0011 7 6 3.3022 3.6888 -0.0016 8 6 3.9397 4.9462 -0.0016 9 1 4.8645 5.0827 0.5392 10 6 3.3745 6.0167 -0.7019 11 7 3.5754 7.2449 -0.2942 12 14 2.3396 5.6952 -2.2234 13 1 3.1905 5.8128 -3.4348 14 1 1.7664 4.3270 -2.1521 15 1 1.2392 6.6899 -2.2929 16 6 4.0696 2.5014 -0.0074 17 8 5.4249 2.5659 -0.0137 18 6 6.1334 1.3249 -0.0199 19 9 5.7972 0.5903 1.1223 20 9 5.7865 0.5955 -1.1622 21 6 3.4336 1.2759 -0.0006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2029 2.3105 -0.0005 26 1 3.1867 7.9876 -0.7822 27 1 7.2059 1.5189 -0.0241 28 1 4.0165 0.3667 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575659926.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:44 Heat of formation + Delta-G solvation = -199.395846 kcal Electronic energy + Delta-G solvation = -20279.759519 eV Core-core repulsion = 16460.935325 eV Total energy + Delta-G solvation = -3818.824194 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.84029 -47.83742 -46.83887 -39.23998 -38.01921 -35.43921 -33.47668 -30.20883 -29.29911 -27.08946 -25.61635 -24.48118 -21.68023 -20.99835 -18.55385 -17.95278 -17.67545 -17.38239 -16.61049 -15.85530 -15.63226 -15.11053 -14.78100 -14.44842 -14.31024 -13.86139 -13.64635 -13.51456 -13.29186 -13.12814 -12.77442 -12.53992 -12.29229 -11.74346 -11.49390 -11.36375 -11.18123 -10.96978 -10.37145 -10.27441 -9.80493 -9.71858 -9.07170 -7.64093 -7.37431 -7.03251 -4.41264 2.18261 2.33828 3.14542 3.21634 3.28617 3.29902 3.87355 4.00051 4.08010 4.27065 4.80601 4.94757 5.19313 5.40802 5.53324 5.55200 5.67879 5.80343 5.98998 6.14992 6.30943 6.66462 6.95437 7.14018 7.26176 7.58914 7.74775 8.10746 8.26720 8.51150 8.64533 9.96795 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.010552 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.550443 B = 2652.923087 C = 3802.078313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.323 6.323 3 C 0.049 3.951 4 C -0.205 4.205 5 C 0.031 3.969 6 F -0.140 7.140 7 C 0.041 3.959 8 C -0.444 4.444 9 H 0.100 0.900 10 C 0.093 3.907 11 N -0.784 5.784 12 Si 0.913 3.087 13 H -0.286 1.286 14 H -0.247 1.247 15 H -0.277 1.277 16 C 0.050 3.950 17 O -0.297 6.297 18 C 0.406 3.594 19 F -0.207 7.207 20 F -0.206 7.206 21 C -0.180 4.180 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.047 0.953 25 H 0.117 0.883 26 H 0.287 0.713 27 H 0.170 0.830 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 -8.780 -0.988 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C 0.005 3.995 4 C -0.224 4.224 5 C 0.010 3.990 6 F -0.119 7.119 7 C 0.037 3.963 8 C -0.471 4.471 9 H 0.118 0.882 10 C -0.129 4.129 11 N -0.407 5.407 12 Si 0.739 3.261 13 H -0.214 1.214 14 H -0.171 1.171 15 H -0.202 1.202 16 C 0.007 3.993 17 O -0.215 6.215 18 C 0.315 3.685 19 F -0.189 7.189 20 F -0.188 7.188 21 C -0.199 4.199 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.135 0.865 26 H 0.097 0.903 27 H 0.187 0.813 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.126 -8.480 -0.960 8.535 hybrid contribution -0.915 0.075 -0.609 1.102 sum -0.790 -8.405 -1.570 8.586 Atomic orbital electron populations 1.22827 0.80111 1.02396 1.00809 1.85880 1.19852 1.27365 1.90689 1.17696 0.90724 0.82847 1.08274 1.20622 0.99035 0.91451 1.11334 1.16793 0.88337 0.80768 1.13108 1.91069 1.76083 1.50295 1.94459 1.16836 0.88959 0.92217 0.98254 1.18994 1.09405 0.90751 1.27901 0.88203 1.26175 0.93980 0.94154 0.98622 1.69823 1.35399 1.00405 1.35050 0.86232 0.79134 0.81256 0.79489 1.21390 1.17081 1.20231 1.18152 0.80088 0.92763 1.08343 1.86557 1.18145 1.27727 1.89023 1.23282 0.97136 0.76376 0.71722 1.93059 1.94392 1.78977 1.52462 1.93059 1.94181 1.79187 1.52392 1.20202 0.92678 0.96325 1.10726 0.93489 0.89392 0.93418 0.86495 0.90289 0.81332 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.80 101.05 0.99 1.48 15 2 O -0.32 -6.24 10.48 -18.79 -0.20 -6.44 15 3 C 0.05 1.07 6.70 -38.88 -0.26 0.81 15 4 C -0.20 -4.53 8.98 -39.41 -0.35 -4.89 15 5 C 0.03 0.76 5.01 -38.74 -0.19 0.57 15 6 F -0.14 -3.51 12.86 2.25 0.03 -3.49 15 7 C 0.04 1.07 4.87 -106.58 -0.52 0.55 15 8 C -0.44 -12.07 8.95 -37.94 -0.34 -12.41 15 9 H 0.10 2.83 8.00 -52.49 -0.42 2.41 15 10 C 0.09 2.46 4.72 -17.32 -0.08 2.38 15 11 N -0.78 -20.91 13.93 55.54 0.77 -20.14 15 12 Si 0.91 21.61 25.32 -169.99 -4.30 17.30 15 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 14 H -0.25 -5.98 5.45 56.52 0.31 -5.68 15 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 16 C 0.05 1.18 6.51 -38.45 -0.25 0.93 15 17 O -0.30 -6.24 9.84 -18.76 -0.18 -6.42 15 18 C 0.41 6.40 5.98 101.05 0.60 7.00 15 19 F -0.21 -3.48 15.56 2.25 0.04 -3.45 15 20 F -0.21 -3.49 15.60 2.25 0.04 -3.45 15 21 C -0.18 -4.00 8.18 -39.35 -0.32 -4.32 15 22 H 0.05 0.65 7.64 -51.93 -0.40 0.25 15 23 H 0.09 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.05 0.65 7.64 -51.93 -0.40 0.25 15 25 H 0.12 2.25 6.25 -52.48 -0.33 1.93 15 26 H 0.29 6.92 8.30 -40.82 -0.34 6.58 15 27 H 0.17 1.70 8.14 -51.93 -0.42 1.28 15 28 H 0.12 2.57 5.07 -52.49 -0.27 2.31 15 LS Contribution 252.15 15.07 3.80 3.80 Total: -1.00 -29.80 252.15 -2.62 -32.42 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -1.88 Total: -2.23 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -0.73 Total: -7.91 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.77 Total: -20.14 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.38 Total: -12.86 kcal Atomic # 9 Polarization: -10.48 SS G_CDS: 0.10 Total: -10.38 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.30 Total: 17.30 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.80 -2.62 -32.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659926.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.980 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds